Wall clock time and date at job start Mon Mar 30 2020 06:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47356 * 89.99481 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.34784 * 120.00075 * 85.00024 * 12 2 1 14 14 O 1.21699 * 119.99570 * 0.02562 * 13 12 2 15 15 C 1.46649 * 120.00337 * 180.02562 * 13 12 2 16 16 C 1.36545 * 125.98960 * 180.02562 * 15 13 12 17 17 C 1.40361 * 106.71135 * 179.97438 * 16 15 13 18 18 C 1.35135 * 107.11491 * 359.97438 * 17 16 15 19 19 C 1.50698 * 125.61717 * 180.02562 * 18 17 16 20 20 F 1.39894 * 109.46962 * 209.99702 * 19 18 17 21 21 F 1.39897 * 109.46896 * 329.99901 * 19 18 17 22 22 O 1.33931 * 108.76490 * 359.76864 * 18 17 16 23 23 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 24 24 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 25 25 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 26 26 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 27 27 H 0.96996 * 120.00792 * 265.00493 * 12 2 1 28 28 H 1.08009 * 126.64332 * 359.91862 * 16 15 13 29 29 H 1.08000 * 126.44172 * 179.97438 * 17 16 15 30 30 H 1.09001 * 109.47165 * 89.99565 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3572 14 8 1.8580 1.1625 -2.4117 15 6 2.6354 -0.7099 -3.5547 16 6 2.8124 -0.1509 -4.7878 17 6 3.2920 -1.1686 -5.6272 18 6 3.3860 -2.2900 -4.8789 19 6 3.8592 -3.6344 -5.3682 20 9 3.2271 -4.6457 -4.6368 21 9 3.5455 -3.7739 -6.7243 22 8 2.9946 -2.0082 -3.6294 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.9026 -0.5284 4.4375 27 1 2.2490 -1.6318 -1.1526 28 1 2.6199 0.8753 -5.0641 29 1 3.5393 -1.0734 -6.6741 30 1 4.9384 -3.7102 -5.2352 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599222250.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:13 Heat of formation + Delta-G solvation = -116.617845 kcal Electronic energy + Delta-G solvation = -18868.525159 eV Core-core repulsion = 15301.780935 eV Total energy + Delta-G solvation = -3566.744225 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.081 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.40627 -47.42686 -42.85912 -39.03318 -35.25295 -33.42045 -32.48233 -31.40346 -29.91858 -26.62169 -25.24636 -23.01317 -21.89089 -20.86425 -19.84997 -18.76645 -18.06519 -17.58937 -17.39083 -16.30236 -16.27100 -15.63137 -14.73556 -14.32339 -14.17191 -14.02912 -13.79571 -13.60797 -13.17440 -13.10759 -13.03961 -12.96103 -12.25968 -11.92433 -11.77619 -11.39499 -10.88260 -10.26193 -10.24881 -9.98296 -9.54443 -9.31968 -8.95415 -8.81283 -8.32436 -6.25165 -4.28856 0.86464 2.03904 2.15802 3.20434 3.32565 3.35447 3.38406 3.44985 3.62221 3.87639 4.27364 4.36725 4.48809 4.67331 5.01495 5.09047 5.38265 5.51110 5.64621 6.09796 6.23025 6.28405 6.46440 6.57494 6.75090 7.06600 7.12233 7.39648 7.99151 8.37882 8.55440 8.74724 9.33922 10.86860 Molecular weight = 259.08amu Principal moments of inertia in cm(-1) A = 0.034734 B = 0.004756 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.929215 B = 5885.857244 C = 6453.290236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.235 3.765 3 H 0.053 0.947 4 C -0.538 4.538 5 H 0.082 0.918 6 C 0.080 3.920 7 N -0.890 5.890 8 Si 0.885 3.115 9 H -0.275 1.275 10 H -0.293 1.293 11 H -0.261 1.261 12 N -0.682 5.682 13 C 0.585 3.415 14 O -0.529 6.529 15 C -0.030 4.030 16 C -0.141 4.141 17 C -0.165 4.165 18 C -0.090 4.090 19 C 0.364 3.636 20 F -0.188 7.188 21 F -0.185 7.185 22 O -0.140 6.140 23 H 0.037 0.963 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.268 0.732 27 H 0.402 0.598 28 H 0.167 0.833 29 H 0.163 0.837 30 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.391 -3.779 -17.945 18.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.132 3.868 3 H 0.071 0.929 4 C -0.576 4.576 5 H 0.100 0.900 6 C -0.124 4.124 7 N -0.526 5.526 8 Si 0.715 3.285 9 H -0.202 1.202 10 H -0.220 1.220 11 H -0.186 1.186 12 N -0.329 5.329 13 C 0.369 3.631 14 O -0.408 6.408 15 C -0.083 4.083 16 C -0.161 4.161 17 C -0.184 4.184 18 C -0.143 4.143 19 C 0.310 3.690 20 F -0.169 7.169 21 F -0.166 7.166 22 O -0.035 6.035 23 H 0.056 0.944 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.237 0.763 28 H 0.185 0.815 29 H 0.181 0.819 30 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.146 -3.196 -17.469 18.036 hybrid contribution -0.578 0.278 0.054 0.644 sum 2.568 -2.918 -17.415 17.843 Atomic orbital electron populations 1.22469 0.98841 1.01207 0.99586 1.19258 0.90480 0.94777 0.82307 0.92887 1.20996 1.33621 1.14620 0.88367 0.90026 1.24819 0.95434 0.96734 0.95434 1.69865 1.44663 1.40008 0.98084 0.86874 0.80572 0.83495 0.77568 1.20183 1.22019 1.18611 1.46240 1.63076 1.14245 1.09319 1.16632 0.79138 0.86001 0.81341 1.90858 1.52028 1.14113 1.83814 1.22881 1.05996 0.81354 0.98100 1.21965 1.01700 1.01414 0.91063 1.21579 1.04135 0.91357 1.01374 1.23013 1.08826 0.97700 0.84719 1.19557 0.97251 0.79147 0.73033 1.93074 1.84956 1.61839 1.77061 1.93052 1.95047 1.95653 1.32865 1.84061 1.63222 1.27349 1.28846 0.94362 0.93112 0.92549 0.92171 0.76343 0.81537 0.81930 0.84196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.60 8.96 37.16 0.33 -3.27 16 2 C 0.23 5.56 2.15 -69.08 -0.15 5.41 16 3 H 0.05 1.36 6.63 -51.93 -0.34 1.01 16 4 C -0.54 -14.46 9.31 -34.44 -0.32 -14.78 16 5 H 0.08 2.32 7.98 -52.49 -0.42 1.90 16 6 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16 7 N -0.89 -26.13 13.96 55.43 0.77 -25.35 16 8 Si 0.89 21.39 24.37 -169.99 -4.14 17.25 16 9 H -0.28 -6.43 6.87 56.52 0.39 -6.04 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 11 H -0.26 -6.23 6.53 56.52 0.37 -5.86 16 12 N -0.68 -13.92 5.06 -56.25 -0.28 -14.20 16 13 C 0.59 11.40 7.75 -12.86 -0.10 11.30 16 14 O -0.53 -11.66 16.53 5.19 0.09 -11.58 16 15 C -0.03 -0.48 7.13 -36.80 -0.26 -0.74 16 16 C -0.14 -1.88 10.62 -39.39 -0.42 -2.30 16 17 C -0.17 -1.80 10.42 -39.89 -0.42 -2.21 16 18 C -0.09 -1.05 6.93 -35.41 -0.25 -1.29 16 19 C 0.36 3.19 5.82 36.00 0.21 3.40 16 20 F -0.19 -2.14 17.31 2.25 0.04 -2.10 16 21 F -0.19 -1.70 17.02 2.25 0.04 -1.66 16 22 O -0.14 -2.05 10.38 4.98 0.05 -2.00 16 23 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.05 1.15 3.27 -51.93 -0.17 0.98 16 25 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.40 7.53 8.29 -40.82 -0.34 7.19 16 28 H 0.17 2.01 8.06 -52.48 -0.42 1.58 16 29 H 0.16 1.27 8.06 -52.49 -0.42 0.84 16 30 H 0.14 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 274.71 15.07 4.14 4.14 Total: -1.00 -31.17 274.71 -3.33 -34.50 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -2.57 Total: 3.36 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -1.47 Total: -2.36 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.49 Total: -39.56 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: 0.14 Total: -13.58 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.08 Total: -3.76 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.14 Total: 17.25 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.17 -3.33 -34.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599222250.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.114 kcal (2) G-P(sol) polarization free energy of solvation -31.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds