Wall clock time and date at job start Mon Mar 30 2020 06:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47356 * 89.99481 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.34784 * 120.00075 * 85.00024 * 12 2 1 14 14 O 1.21699 * 119.99570 * 0.02562 * 13 12 2 15 15 C 1.46649 * 120.00337 * 180.02562 * 13 12 2 16 16 C 1.36545 * 125.98960 * 180.02562 * 15 13 12 17 17 C 1.40361 * 106.71135 * 179.97438 * 16 15 13 18 18 C 1.35135 * 107.11491 * 359.97438 * 17 16 15 19 19 C 1.50698 * 125.61717 * 180.02562 * 18 17 16 20 20 F 1.39894 * 109.46962 * 209.99702 * 19 18 17 21 21 F 1.39897 * 109.46896 * 329.99901 * 19 18 17 22 22 O 1.33931 * 108.76490 * 359.76864 * 18 17 16 23 23 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 24 24 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 25 25 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 26 26 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 27 27 H 0.96996 * 120.00792 * 265.00493 * 12 2 1 28 28 H 1.08009 * 126.64332 * 359.91862 * 16 15 13 29 29 H 1.08000 * 126.44172 * 179.97438 * 17 16 15 30 30 H 1.09001 * 109.47165 * 89.99565 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3572 14 8 1.8580 1.1625 -2.4117 15 6 2.6354 -0.7099 -3.5547 16 6 2.8124 -0.1509 -4.7878 17 6 3.2920 -1.1686 -5.6272 18 6 3.3860 -2.2900 -4.8789 19 6 3.8592 -3.6344 -5.3682 20 9 3.2271 -4.6457 -4.6368 21 9 3.5455 -3.7739 -6.7243 22 8 2.9946 -2.0082 -3.6294 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.9026 -0.5284 4.4375 27 1 2.2490 -1.6318 -1.1526 28 1 2.6199 0.8753 -5.0641 29 1 3.5393 -1.0734 -6.6741 30 1 4.9384 -3.7102 -5.2352 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599222250.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:13 Heat of formation + Delta-G solvation = -138.958760 kcal Electronic energy + Delta-G solvation = -18869.493934 eV Core-core repulsion = 15301.780935 eV Total energy + Delta-G solvation = -3567.712999 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.081 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.14365 -48.17920 -43.90954 -40.61901 -37.03359 -34.64967 -34.25313 -32.66901 -31.47628 -27.65279 -27.23711 -24.34277 -22.90069 -22.35224 -21.34298 -20.08349 -18.88954 -18.73986 -18.16951 -18.04376 -17.51214 -17.28197 -16.42226 -15.76395 -15.31181 -15.07947 -14.90777 -14.83055 -14.55653 -14.40728 -14.13923 -14.12581 -13.85204 -13.69270 -13.28890 -12.81727 -12.53661 -12.17739 -11.71529 -11.35718 -11.29840 -11.23834 -10.90153 -10.22251 -9.84365 -8.40059 -6.47803 -0.26140 1.04832 1.17432 1.28559 1.36288 1.45788 2.02843 2.14489 2.25387 2.70566 2.95721 3.06402 3.53853 3.72200 3.83651 3.90355 4.36273 4.41390 4.42998 4.50830 4.62429 4.74840 4.91963 5.15198 5.21981 5.32454 5.45733 5.59266 6.07087 6.50255 6.63214 6.99460 7.21077 8.75264 Molecular weight = 259.08amu Principal moments of inertia in cm(-1) A = 0.034734 B = 0.004756 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.929215 B = 5885.857244 C = 6453.290236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.240 3.760 3 H 0.034 0.966 4 C -0.539 4.539 5 H 0.054 0.946 6 C 0.030 3.970 7 N -0.932 5.932 8 Si 0.941 3.059 9 H -0.258 1.258 10 H -0.290 1.290 11 H -0.258 1.258 12 N -0.687 5.687 13 C 0.589 3.411 14 O -0.561 6.561 15 C -0.071 4.071 16 C -0.122 4.122 17 C -0.158 4.158 18 C -0.084 4.084 19 C 0.365 3.635 20 F -0.205 7.205 21 F -0.184 7.184 22 O -0.156 6.156 23 H 0.050 0.950 24 H 0.047 0.953 25 H 0.064 0.936 26 H 0.272 0.728 27 H 0.408 0.592 28 H 0.178 0.822 29 H 0.200 0.800 30 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.373 -3.696 -20.253 20.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.136 3.864 3 H 0.052 0.948 4 C -0.577 4.577 5 H 0.072 0.928 6 C -0.170 4.170 7 N -0.571 5.571 8 Si 0.768 3.232 9 H -0.184 1.184 10 H -0.218 1.218 11 H -0.182 1.182 12 N -0.334 5.334 13 C 0.376 3.624 14 O -0.443 6.443 15 C -0.124 4.124 16 C -0.142 4.142 17 C -0.177 4.177 18 C -0.137 4.137 19 C 0.312 3.688 20 F -0.186 7.186 21 F -0.165 7.165 22 O -0.052 6.052 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.244 0.756 28 H 0.196 0.804 29 H 0.217 0.783 30 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 3.128 -3.131 -19.805 20.294 hybrid contribution -0.467 0.149 0.627 0.796 sum 2.662 -2.983 -19.178 19.591 Atomic orbital electron populations 1.22368 0.97273 1.01909 0.99982 1.18946 0.91631 0.93491 0.82375 0.94795 1.21189 1.32841 1.13750 0.89923 0.92808 1.25581 0.96759 0.99537 0.95111 1.69979 1.46444 1.41914 0.98737 0.85968 0.79692 0.80047 0.77527 1.18365 1.21766 1.18206 1.46066 1.63827 1.14485 1.09069 1.16900 0.78064 0.85702 0.81763 1.90820 1.53413 1.15439 1.84624 1.22192 1.10091 0.82542 0.97544 1.22294 0.99325 1.02354 0.90237 1.21958 1.03123 0.89944 1.02664 1.23826 1.06765 0.99450 0.83629 1.20127 0.99208 0.77031 0.72463 1.93045 1.85555 1.62423 1.77594 1.93057 1.95236 1.95465 1.32788 1.84027 1.63870 1.26710 1.30598 0.93089 0.93456 0.91731 0.91893 0.75648 0.80436 0.78271 0.79250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.82 8.96 71.98 0.65 -6.18 16 2 C 0.24 11.46 2.15 44.25 0.10 11.55 16 3 H 0.03 1.76 6.63 -2.39 -0.02 1.75 16 4 C -0.54 -29.63 9.31 25.60 0.24 -29.39 16 5 H 0.05 3.18 7.98 -2.91 -0.02 3.15 16 6 C 0.03 1.70 5.45 84.66 0.46 2.16 16 7 N -0.93 -55.81 13.96 21.45 0.30 -55.51 16 8 Si 0.94 43.99 24.37 68.60 1.67 45.66 16 9 H -0.26 -11.30 6.87 99.48 0.68 -10.62 16 10 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 11 H -0.26 -11.81 6.53 99.48 0.65 -11.16 16 12 N -0.69 -28.47 5.06 -450.09 -2.28 -30.75 16 13 C 0.59 23.05 7.75 86.44 0.67 23.72 16 14 O -0.56 -24.85 16.53 -4.35 -0.07 -24.92 16 15 C -0.07 -2.22 7.13 24.07 0.17 -2.05 16 16 C -0.12 -2.98 10.62 22.39 0.24 -2.74 16 17 C -0.16 -2.88 10.42 22.07 0.23 -2.65 16 18 C -0.08 -1.72 6.93 24.97 0.17 -1.55 16 19 C 0.36 5.16 5.82 71.24 0.41 5.57 16 20 F -0.21 -4.24 17.31 44.97 0.78 -3.46 16 21 F -0.18 -2.72 17.02 44.97 0.77 -1.95 16 22 O -0.16 -4.40 10.38 -5.08 -0.05 -4.46 16 23 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.05 2.07 3.27 -2.39 -0.01 2.06 16 25 H 0.06 2.65 8.14 -2.38 -0.02 2.63 16 26 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 27 H 0.41 15.69 8.29 -92.71 -0.77 14.92 16 28 H 0.18 3.88 8.06 -2.91 -0.02 3.85 16 29 H 0.20 2.10 8.06 -2.91 -0.02 2.08 16 30 H 0.19 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -68.39 274.71 4.80 -63.59 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.35 Total: 13.33 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: 3.34 Total: -1.54 kcal Atomic # 7 Polarization: -84.28 SS G_CDS: -1.98 Total: -86.26 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -0.12 Total: -29.38 kcal Atomic # 9 Polarization: -6.95 SS G_CDS: 1.54 Total: -5.41 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.67 Total: 45.66 kcal Total: -68.39 4.80 -63.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599222250.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.366 kcal (2) G-P(sol) polarization free energy of solvation -68.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds