Wall clock time and date at job start Mon Mar 30 2020 06:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40338 * 126.64627 * 2 1 4 4 C 1.35162 * 107.12670 * 180.02562 * 3 2 1 5 5 C 1.50700 * 125.60990 * 180.02562 * 4 3 2 6 6 F 1.39903 * 109.47214 * 209.99848 * 5 4 3 7 7 F 1.39897 * 109.46899 * 329.99638 * 5 4 3 8 8 O 1.33966 * 108.77857 * 359.73602 * 4 3 2 9 9 C 1.34925 * 109.38140 * 0.43661 * 8 4 3 10 10 C 1.46509 * 125.99549 * 179.82769 * 9 8 4 11 11 O 1.21745 * 120.00152 * 187.93199 * 10 9 8 12 12 N 1.34781 * 120.00207 * 7.92970 * 10 9 8 13 13 C 1.46498 * 119.99966 * 187.56751 * 12 10 9 14 14 C 1.36847 * 119.99825 * 7.56565 * 12 10 9 15 15 H 1.08000 * 119.99945 * 28.02011 * 14 12 10 16 16 C 1.39028 * 119.99932 * 207.74287 * 14 12 10 17 17 N 1.31373 * 119.99984 * 23.81324 * 16 14 12 18 18 Si 1.86804 * 119.99696 * 203.81637 * 16 14 12 19 19 H 1.48500 * 109.47465 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47222 * 120.00243 * 18 16 14 21 21 H 1.48503 * 109.46645 * 240.00139 * 18 16 14 22 22 H 1.08999 * 109.46638 * 269.97117 * 1 2 3 23 23 H 1.08995 * 109.47214 * 29.96879 * 1 2 3 24 24 H 1.08994 * 109.46898 * 149.97798 * 1 2 3 25 25 H 1.07994 * 126.43623 * 0.06014 * 3 2 1 26 26 H 1.08997 * 109.47501 * 89.99656 * 5 4 3 27 27 H 1.08997 * 109.47269 * 239.52312 * 13 12 10 28 28 H 1.09001 * 109.47069 * 359.52573 * 13 12 10 29 29 H 1.09004 * 109.46710 * 119.52077 * 13 12 10 30 30 H 0.97002 * 119.99742 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3446 1.1260 0.0000 4 6 3.6186 0.6744 -0.0006 5 6 4.8550 1.5360 -0.0002 6 9 5.8906 0.8658 -0.6604 7 9 4.5843 2.7401 -0.6589 8 8 3.6012 -0.6652 0.0049 9 6 2.3228 -1.0965 -0.0006 10 6 1.8858 -2.4949 -0.0008 11 8 0.7082 -2.7646 -0.1516 12 7 2.7874 -3.4827 0.1658 13 6 2.3813 -4.8806 0.0010 14 6 4.0823 -3.1799 0.4889 15 1 4.3048 -2.2770 1.0380 16 6 5.1107 -4.0376 0.1153 17 7 4.9497 -4.8519 -0.9030 18 14 6.7215 -4.0320 1.0612 19 1 6.6498 -3.0304 2.1552 20 1 6.9617 -5.3792 1.6378 21 1 7.8340 -3.6814 0.1421 22 1 -0.3632 -0.0005 1.0277 23 1 -0.3633 0.8902 -0.5133 24 1 -0.3633 -0.8897 -0.5142 25 1 2.0304 2.1592 0.0009 26 1 5.1533 1.7431 1.0274 27 1 2.5616 -5.4232 0.9289 28 1 1.3203 -4.9241 -0.2451 29 1 2.9598 -5.3345 -0.8037 30 1 5.6674 -5.4500 -1.1638 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599227184.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:52 Heat of formation + Delta-G solvation = -130.923159 kcal Electronic energy + Delta-G solvation = -19793.596279 eV Core-core repulsion = 16226.231729 eV Total energy + Delta-G solvation = -3567.364550 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.081 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.09849 -48.13288 -43.65777 -40.22574 -37.02168 -34.99650 -33.61504 -32.50443 -29.21796 -28.47434 -27.46974 -25.97389 -22.61829 -22.16470 -20.92911 -19.68802 -18.73692 -18.25291 -18.10323 -17.98818 -17.05739 -16.52110 -16.43064 -15.67437 -15.34052 -14.98989 -14.63074 -14.49906 -14.29005 -14.01903 -13.86885 -13.79964 -13.57966 -13.26634 -13.10241 -12.99124 -12.73351 -12.44614 -12.28626 -12.08333 -11.28663 -10.75504 -10.63877 -9.84023 -9.53328 -8.41970 -6.11000 0.02005 1.16699 1.39982 1.42335 1.53076 1.57425 2.20187 2.27317 2.67074 2.89414 3.02485 3.18118 3.74823 3.81128 3.89808 4.11974 4.36108 4.54698 4.58927 4.79579 4.83865 4.85247 5.02908 5.19459 5.22025 5.44759 5.51312 5.69928 5.96301 6.28733 6.94893 7.32441 7.73033 8.54677 Molecular weight = 259.08amu Principal moments of inertia in cm(-1) A = 0.016272 B = 0.010093 C = 0.006535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.379186 B = 2773.608908 C = 4283.549111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.135 4.135 3 C -0.157 4.157 4 C -0.119 4.119 5 C 0.367 3.633 6 F -0.208 7.208 7 F -0.186 7.186 8 O -0.137 6.137 9 C -0.041 4.041 10 C 0.504 3.496 11 O -0.610 6.610 12 N -0.430 5.430 13 C 0.084 3.916 14 C -0.357 4.357 15 H 0.103 0.897 16 C 0.008 3.992 17 N -0.876 5.876 18 Si 0.985 3.015 19 H -0.257 1.257 20 H -0.268 1.268 21 H -0.276 1.276 22 H 0.077 0.923 23 H 0.093 0.907 24 H 0.061 0.939 25 H 0.194 0.806 26 H 0.187 0.813 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.884 11.286 4.150 12.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C -0.176 4.176 4 C -0.172 4.172 5 C 0.314 3.686 6 F -0.189 7.189 7 F -0.167 7.167 8 O -0.031 6.031 9 C -0.095 4.095 10 C 0.295 3.705 11 O -0.501 6.501 12 N -0.144 5.144 13 C -0.059 4.059 14 C -0.484 4.484 15 H 0.120 0.880 16 C -0.197 4.197 17 N -0.512 5.512 18 Si 0.807 3.193 19 H -0.180 1.180 20 H -0.193 1.193 21 H -0.202 1.202 22 H 0.095 0.905 23 H 0.111 0.889 24 H 0.080 0.920 25 H 0.211 0.789 26 H 0.204 0.796 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.105 0.895 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.728 10.737 3.935 11.458 hybrid contribution 0.689 -0.419 -0.109 0.814 sum 1.417 10.318 3.827 11.095 Atomic orbital electron populations 1.20323 0.86939 1.03482 1.03008 1.20936 0.98701 0.90506 1.03747 1.21655 0.89778 1.01005 1.05191 1.23845 0.98676 0.83267 1.11420 1.20044 0.78169 0.74993 0.95425 1.93032 1.60275 1.81283 1.84310 1.93028 1.94064 1.45195 1.84396 1.84491 1.28718 1.20325 1.69593 1.22269 0.81271 0.95300 1.10616 1.17150 0.86013 0.83223 0.84086 1.90620 1.17171 1.82555 1.59744 1.43783 1.09137 1.05456 1.56048 1.21757 0.99547 0.82015 1.02580 1.19950 0.81696 1.10946 1.35787 0.87965 1.26266 1.02777 0.95744 0.94957 1.69962 1.35579 1.23329 1.22313 0.85005 0.76586 0.79017 0.78642 1.18032 1.19297 1.20179 0.90486 0.88861 0.91983 0.78913 0.79612 0.93121 0.92177 0.89530 0.91124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.62 9.91 71.24 0.71 -1.91 16 2 C -0.14 -5.12 6.20 -19.72 -0.12 -5.24 16 3 C -0.16 -4.82 10.38 22.07 0.23 -4.59 16 4 C -0.12 -4.01 6.93 24.98 0.17 -3.84 16 5 C 0.37 9.22 5.82 71.24 0.41 9.64 16 6 F -0.21 -6.68 17.31 44.97 0.78 -5.90 16 7 F -0.19 -4.43 17.02 44.97 0.77 -3.67 16 8 O -0.14 -6.08 7.65 -5.49 -0.04 -6.12 16 9 C -0.04 -1.93 6.72 24.06 0.16 -1.77 16 10 C 0.50 26.56 7.58 86.40 0.65 27.22 16 11 O -0.61 -32.94 14.08 -4.49 -0.06 -33.01 16 12 N -0.43 -23.05 2.98 -663.63 -1.98 -25.03 16 13 C 0.08 4.15 9.80 127.77 1.25 5.40 16 14 C -0.36 -18.90 8.17 84.10 0.69 -18.21 16 15 H 0.10 5.36 5.92 -2.91 -0.02 5.34 16 16 C 0.01 0.41 5.06 84.95 0.43 0.84 16 17 N -0.88 -46.26 11.08 21.68 0.24 -46.01 16 18 Si 0.99 39.62 29.61 68.60 2.03 41.65 16 19 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 20 H -0.27 -10.32 7.11 99.48 0.71 -9.62 16 21 H -0.28 -10.99 7.11 99.48 0.71 -10.29 16 22 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 23 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 24 H 0.06 2.37 6.31 -2.39 -0.02 2.36 16 25 H 0.19 4.18 8.06 -2.91 -0.02 4.16 16 26 H 0.19 2.79 8.14 -2.39 -0.02 2.77 16 27 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.06 2.88 6.92 -2.39 -0.02 2.86 16 29 H 0.09 4.51 5.83 -2.39 -0.01 4.49 16 30 H 0.28 13.59 8.31 -92.71 -0.77 12.82 16 Total: -1.00 -65.51 271.53 7.51 -58.00 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 1.19 Total: 12.56 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 4.59 Total: 7.52 kcal Atomic # 7 Polarization: -69.30 SS G_CDS: -1.74 Total: -71.04 kcal Atomic # 8 Polarization: -39.02 SS G_CDS: -0.11 Total: -39.13 kcal Atomic # 9 Polarization: -11.11 SS G_CDS: 1.54 Total: -9.57 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.65 kcal Total: -65.51 7.51 -58.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599227184.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.923 kcal (2) G-P(sol) polarization free energy of solvation -65.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds