Wall clock time and date at job start Mon Mar 30 2020 06:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86798 * 119.99614 * 2 1 4 4 H 1.48496 * 109.47076 * 239.99649 * 3 2 1 5 5 H 1.48501 * 109.47501 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46889 * 120.00086 * 3 2 1 7 7 C 1.39928 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00081 * 196.93716 * 7 2 1 9 9 C 1.41413 * 119.99859 * 16.93832 * 7 2 1 10 10 C 1.40788 * 120.20295 * 206.72405 * 9 7 2 11 11 C 1.37652 * 119.88757 * 179.97438 * 10 9 7 12 12 C 1.38516 * 120.33009 * 0.25335 * 11 10 9 13 13 C 1.39299 * 120.42213 * 359.48607 * 12 11 10 14 14 N 1.39766 * 119.95086 * 180.23704 * 13 12 11 15 15 C 1.39067 * 119.99993 * 34.28605 * 14 13 12 16 16 C 1.39262 * 120.07353 * 186.00853 * 15 14 13 17 17 N 1.31959 * 119.95781 * 179.68528 * 16 15 14 18 18 C 1.32204 * 120.11867 * 0.61256 * 17 16 15 19 19 C 1.38540 * 120.14879 * 359.66447 * 18 17 16 20 20 F 1.35099 * 119.98223 * 180.02562 * 19 18 17 21 21 N 1.32399 * 120.03670 * 0.02562 * 19 18 17 22 22 C 1.38327 * 120.09487 * 0.51264 * 13 12 11 23 23 H 0.97001 * 120.00330 * 359.97438 * 1 2 3 24 24 H 1.07993 * 120.05483 * 359.97438 * 10 9 7 25 25 H 1.08007 * 119.83429 * 179.97438 * 11 10 9 26 26 H 1.08003 * 119.78758 * 179.72415 * 12 11 10 27 27 H 0.97006 * 119.99845 * 214.28185 * 14 13 12 28 28 H 1.07996 * 120.01571 * 359.97438 * 16 15 14 29 29 H 1.08000 * 119.92342 * 179.68615 * 18 17 16 30 30 H 1.07994 * 120.15904 * 179.72268 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6965 -1.2124 5 1 1.2772 2.7465 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0529 -1.2320 0.2730 9 6 1.3470 -2.4101 -0.3557 10 6 1.7986 -3.6448 0.1479 11 6 1.1499 -4.8072 -0.2028 12 6 0.0573 -4.7692 -1.0534 13 6 -0.4041 -3.5544 -1.5551 14 7 -1.5105 -3.5271 -2.4087 15 6 -2.5458 -4.4390 -2.2345 16 6 -3.5877 -4.4965 -3.1568 17 7 -4.5658 -5.3670 -2.9925 18 6 -4.5649 -6.1765 -1.9474 19 6 -3.5337 -6.1194 -1.0239 20 9 -3.5358 -6.9487 0.0426 21 7 -2.5461 -5.2526 -1.1860 22 6 0.2345 -2.3757 -1.2143 23 1 -0.4851 0.8400 0.0004 24 1 2.6525 -3.6799 0.8081 25 1 1.4974 -5.7540 0.1838 26 1 -0.4423 -5.6870 -1.3262 27 1 -1.5561 -2.8720 -3.1227 28 1 -3.5927 -3.8323 -4.0083 29 1 -5.3696 -6.8843 -1.8134 30 1 -0.1196 -1.4338 -1.6062 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693457747.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:38 Heat of formation + Delta-G solvation = 36.971980 kcal Electronic energy + Delta-G solvation = -18069.124891 eV Core-core repulsion = 14972.102797 eV Total energy + Delta-G solvation = -3097.022094 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 259.082 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.96423 -40.86373 -38.05399 -35.59044 -33.69065 -33.40487 -30.44963 -29.62021 -27.85665 -25.40257 -24.34605 -23.69841 -21.17687 -20.51606 -18.33765 -18.12738 -17.01300 -16.77283 -16.22125 -15.98668 -15.50343 -14.77038 -14.66085 -14.12703 -13.84897 -13.27767 -12.97383 -12.84993 -12.49926 -12.10764 -11.66727 -11.41733 -11.17096 -11.05321 -10.73195 -10.51434 -10.21139 -9.95741 -9.61961 -9.22666 -9.01350 -8.39234 -7.44303 -6.89476 -6.73624 -4.43047 0.87394 1.25719 2.74511 2.88612 3.03444 3.05791 3.08982 3.22594 3.75849 3.79230 3.89689 4.38255 4.55353 4.58521 4.94688 5.21609 5.55040 5.59594 6.11011 6.33888 6.53284 6.67584 6.79859 6.97646 6.99107 7.13901 7.26708 7.50994 7.62799 7.77554 7.90278 7.95990 8.19051 8.25422 8.56218 8.82765 8.87507 10.15335 Molecular weight = 259.08amu Principal moments of inertia in cm(-1) A = 0.030024 B = 0.005264 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.366577 B = 5318.046704 C = 5814.837033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.077 3.923 3 Si 0.908 3.092 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.466 4.466 8 H 0.079 0.921 9 C 0.123 3.877 10 C -0.225 4.225 11 C -0.085 4.085 12 C -0.220 4.220 13 C 0.146 3.854 14 N -0.633 5.633 15 C 0.398 3.602 16 C -0.027 4.027 17 N -0.379 5.379 18 C -0.052 4.052 19 C 0.313 3.687 20 F -0.105 7.105 21 N -0.510 5.510 22 C -0.180 4.180 23 H 0.280 0.720 24 H 0.094 0.906 25 H 0.092 0.908 26 H 0.098 0.902 27 H 0.417 0.583 28 H 0.171 0.829 29 H 0.172 0.828 30 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.814 -5.000 -5.233 9.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.496 4.496 8 H 0.097 0.903 9 C 0.120 3.880 10 C -0.245 4.245 11 C -0.104 4.104 12 C -0.242 4.242 13 C 0.053 3.947 14 N -0.255 5.255 15 C 0.158 3.842 16 C -0.196 4.196 17 N -0.091 5.091 18 C -0.215 4.215 19 C 0.154 3.846 20 F -0.084 7.084 21 N -0.239 5.239 22 C -0.202 4.202 23 H 0.091 0.909 24 H 0.112 0.888 25 H 0.110 0.890 26 H 0.116 0.884 27 H 0.255 0.745 28 H 0.188 0.812 29 H 0.189 0.811 30 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.915 -4.881 -5.083 9.201 hybrid contribution 0.345 0.914 0.223 1.002 sum -5.570 -3.968 -4.859 8.389 Atomic orbital electron populations 1.69821 1.07518 1.29225 1.35710 1.25882 0.94714 1.01219 0.92221 0.86379 0.80134 0.80275 0.80003 1.18835 1.20413 1.18999 1.19497 0.97838 0.90968 1.41280 0.90317 1.17337 0.90320 0.92206 0.88158 1.21062 1.04086 0.92983 1.06342 1.20403 0.95650 0.96697 0.97601 1.20209 1.01071 0.95004 1.07881 1.17592 0.87431 0.94825 0.94840 1.42229 1.16768 1.32820 1.33659 1.19109 0.88209 0.88463 0.88443 1.23001 0.92734 1.02339 1.01569 1.68179 1.22245 1.01106 1.17563 1.23012 1.00598 1.04201 0.93659 1.19022 0.91721 0.88707 0.85161 1.91639 1.95779 1.67532 1.53458 1.67585 1.26338 1.07787 1.22158 1.20984 1.01655 0.94597 1.02963 0.90909 0.88769 0.89011 0.88377 0.74541 0.81174 0.81076 0.86209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.16 11.05 55.55 0.61 -19.54 16 2 C 0.08 1.88 5.14 -17.34 -0.09 1.79 16 3 Si 0.91 18.21 29.59 -169.99 -5.03 13.18 16 4 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 5 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 6 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 7 C -0.47 -12.04 9.05 -37.74 -0.34 -12.38 16 8 H 0.08 1.95 7.90 -52.49 -0.41 1.54 16 9 C 0.12 3.19 5.55 -106.85 -0.59 2.59 16 10 C -0.22 -5.46 9.79 -38.83 -0.38 -5.84 16 11 C -0.08 -1.92 10.01 -39.69 -0.40 -2.32 16 12 C -0.22 -4.99 8.59 -39.08 -0.34 -5.32 16 13 C 0.15 3.25 6.26 -83.81 -0.52 2.72 16 14 N -0.63 -11.29 5.47 -9.93 -0.05 -11.34 16 15 C 0.40 6.80 7.18 -154.65 -1.11 5.69 16 16 C -0.03 -0.37 11.08 -17.12 -0.19 -0.56 16 17 N -0.38 -5.36 10.48 -12.81 -0.13 -5.50 16 18 C -0.05 -0.71 11.20 -17.28 -0.19 -0.90 16 19 C 0.31 5.04 8.44 -17.20 -0.15 4.89 16 20 F -0.10 -1.64 17.30 2.25 0.04 -1.60 16 21 N -0.51 -9.66 7.39 -12.56 -0.09 -9.75 16 22 C -0.18 -4.44 8.59 -38.67 -0.33 -4.77 16 23 H 0.28 6.49 8.30 -40.82 -0.34 6.16 16 24 H 0.09 2.15 8.06 -52.49 -0.42 1.72 16 25 H 0.09 1.84 8.06 -52.48 -0.42 1.41 16 26 H 0.10 2.16 6.37 -52.48 -0.33 1.82 16 27 H 0.42 6.01 8.82 -40.82 -0.36 5.65 16 28 H 0.17 1.76 8.06 -52.49 -0.42 1.34 16 29 H 0.17 1.72 8.06 -52.49 -0.42 1.30 16 30 H 0.12 2.99 6.30 -52.49 -0.33 2.66 16 LS Contribution 273.40 15.07 4.12 4.12 Total: -1.00 -28.58 273.40 -7.44 -36.02 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -2.26 Total: 8.81 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -4.63 Total: -14.39 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: 0.33 Total: -46.14 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.58 -7.44 -36.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693457747.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.991 kcal (2) G-P(sol) polarization free energy of solvation -28.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds