Wall clock time and date at job start Mon Mar 30 2020 06:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86798 * 119.99614 * 2 1 4 4 H 1.48496 * 109.47076 * 239.99649 * 3 2 1 5 5 H 1.48501 * 109.47501 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46889 * 120.00086 * 3 2 1 7 7 C 1.39928 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00081 * 196.93716 * 7 2 1 9 9 C 1.41413 * 119.99859 * 16.93832 * 7 2 1 10 10 C 1.40788 * 120.20295 * 206.72405 * 9 7 2 11 11 C 1.37652 * 119.88757 * 179.97438 * 10 9 7 12 12 C 1.38516 * 120.33009 * 0.25335 * 11 10 9 13 13 C 1.39299 * 120.42213 * 359.48607 * 12 11 10 14 14 N 1.39766 * 119.95086 * 180.23704 * 13 12 11 15 15 C 1.39067 * 119.99993 * 34.28605 * 14 13 12 16 16 C 1.39262 * 120.07353 * 186.00853 * 15 14 13 17 17 N 1.31959 * 119.95781 * 179.68528 * 16 15 14 18 18 C 1.32204 * 120.11867 * 0.61256 * 17 16 15 19 19 C 1.38540 * 120.14879 * 359.66447 * 18 17 16 20 20 F 1.35099 * 119.98223 * 180.02562 * 19 18 17 21 21 N 1.32399 * 120.03670 * 0.02562 * 19 18 17 22 22 C 1.38327 * 120.09487 * 0.51264 * 13 12 11 23 23 H 0.97001 * 120.00330 * 359.97438 * 1 2 3 24 24 H 1.07993 * 120.05483 * 359.97438 * 10 9 7 25 25 H 1.08007 * 119.83429 * 179.97438 * 11 10 9 26 26 H 1.08003 * 119.78758 * 179.72415 * 12 11 10 27 27 H 0.97006 * 119.99845 * 214.28185 * 14 13 12 28 28 H 1.07996 * 120.01571 * 359.97438 * 16 15 14 29 29 H 1.08000 * 119.92342 * 179.68615 * 18 17 16 30 30 H 1.07994 * 120.15904 * 179.72268 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6965 -1.2124 5 1 1.2772 2.7465 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0529 -1.2320 0.2730 9 6 1.3470 -2.4101 -0.3557 10 6 1.7986 -3.6448 0.1479 11 6 1.1499 -4.8072 -0.2028 12 6 0.0573 -4.7692 -1.0534 13 6 -0.4041 -3.5544 -1.5551 14 7 -1.5105 -3.5271 -2.4087 15 6 -2.5458 -4.4390 -2.2345 16 6 -3.5877 -4.4965 -3.1568 17 7 -4.5658 -5.3670 -2.9925 18 6 -4.5649 -6.1765 -1.9474 19 6 -3.5337 -6.1194 -1.0239 20 9 -3.5358 -6.9487 0.0426 21 7 -2.5461 -5.2526 -1.1860 22 6 0.2345 -2.3757 -1.2143 23 1 -0.4851 0.8400 0.0004 24 1 2.6525 -3.6799 0.8081 25 1 1.4974 -5.7540 0.1838 26 1 -0.4423 -5.6870 -1.3262 27 1 -1.5561 -2.8720 -3.1227 28 1 -3.5927 -3.8323 -4.0083 29 1 -5.3696 -6.8843 -1.8134 30 1 -0.1196 -1.4338 -1.6062 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693457747.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:37 Heat of formation + Delta-G solvation = 20.564646 kcal Electronic energy + Delta-G solvation = -18069.836367 eV Core-core repulsion = 14972.102797 eV Total energy + Delta-G solvation = -3097.733570 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 259.082 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.16412 -42.11572 -39.72391 -37.10792 -35.32806 -34.86159 -31.86123 -31.45518 -29.38995 -27.23469 -25.63839 -24.99489 -22.95125 -22.19674 -19.68332 -19.64320 -18.58992 -17.85423 -17.54359 -17.38854 -17.07630 -16.45641 -16.34845 -15.53047 -15.05037 -14.89635 -14.57469 -14.22724 -14.01958 -13.75097 -13.25393 -12.86680 -12.77482 -12.61571 -12.37669 -12.17292 -11.77417 -11.75314 -11.28437 -10.97893 -10.30457 -9.84710 -9.31188 -8.65976 -8.39016 -6.36128 -0.31983 0.00797 1.00968 1.10379 1.40035 1.50215 1.54897 1.85736 2.22247 2.48158 2.55857 2.77847 3.25210 3.38728 3.71604 3.75587 4.15131 4.42838 4.50190 4.72682 4.83419 5.08572 5.13912 5.18592 5.34133 5.42532 5.74449 5.87875 5.96603 6.08266 6.09814 6.40416 6.50159 6.70032 6.84370 6.94603 7.03530 8.34782 Molecular weight = 259.08amu Principal moments of inertia in cm(-1) A = 0.030024 B = 0.005264 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.366577 B = 5318.046704 C = 5814.837033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.039 3.961 3 Si 0.981 3.019 4 H -0.259 1.259 5 H -0.269 1.269 6 H -0.263 1.263 7 C -0.502 4.502 8 H 0.076 0.924 9 C 0.094 3.906 10 C -0.248 4.248 11 C -0.085 4.085 12 C -0.227 4.227 13 C 0.161 3.839 14 N -0.636 5.636 15 C 0.377 3.623 16 C -0.001 4.001 17 N -0.385 5.385 18 C -0.023 4.023 19 C 0.291 3.709 20 F -0.108 7.108 21 N -0.552 5.552 22 C -0.202 4.202 23 H 0.287 0.713 24 H 0.099 0.901 25 H 0.117 0.883 26 H 0.105 0.895 27 H 0.431 0.569 28 H 0.209 0.791 29 H 0.211 0.789 30 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.194 -5.105 -6.338 10.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.176 4.176 3 Si 0.802 3.198 4 H -0.183 1.183 5 H -0.193 1.193 6 H -0.187 1.187 7 C -0.531 4.531 8 H 0.094 0.906 9 C 0.091 3.909 10 C -0.268 4.268 11 C -0.104 4.104 12 C -0.249 4.249 13 C 0.066 3.934 14 N -0.262 5.262 15 C 0.138 3.862 16 C -0.169 4.169 17 N -0.097 5.097 18 C -0.185 4.185 19 C 0.133 3.867 20 F -0.087 7.087 21 N -0.281 5.281 22 C -0.224 4.224 23 H 0.097 0.903 24 H 0.117 0.883 25 H 0.135 0.865 26 H 0.123 0.877 27 H 0.271 0.729 28 H 0.226 0.774 29 H 0.228 0.772 30 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.344 -5.026 -6.205 10.849 hybrid contribution 0.600 0.770 0.539 1.115 sum -6.744 -4.255 -5.666 9.782 Atomic orbital electron populations 1.69880 1.08902 1.30458 1.36103 1.26692 0.95447 1.04289 0.91151 0.85272 0.78764 0.75743 0.80038 1.18275 1.19350 1.18708 1.19756 0.98066 0.92196 1.43104 0.90554 1.17730 0.91264 0.93027 0.88860 1.21208 1.04955 0.93261 1.07360 1.20708 0.95304 0.97279 0.97120 1.20405 1.01056 0.95459 1.07953 1.17564 0.87882 0.93817 0.94121 1.42024 1.16211 1.34135 1.33785 1.19366 0.89025 0.88617 0.89184 1.23533 0.90749 1.01563 1.01092 1.68382 1.22088 1.01476 1.17715 1.23607 0.99889 1.03202 0.91774 1.19274 0.92296 0.88993 0.86100 1.91630 1.95820 1.67556 1.53716 1.67357 1.28290 1.08908 1.23555 1.20922 1.02440 0.95044 1.04019 0.90267 0.88323 0.86515 0.87681 0.72908 0.77429 0.77245 0.87207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.61 11.05 21.82 0.24 -42.37 16 2 C 0.04 1.93 5.14 85.25 0.44 2.36 16 3 Si 0.98 37.51 29.59 68.60 2.03 39.54 16 4 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 5 H -0.27 -9.74 7.11 99.48 0.71 -9.04 16 6 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 7 C -0.50 -26.78 9.05 23.46 0.21 -26.57 16 8 H 0.08 3.93 7.90 -2.91 -0.02 3.91 16 9 C 0.09 5.06 5.55 -21.31 -0.12 4.94 16 10 C -0.25 -12.38 9.79 22.75 0.22 -12.16 16 11 C -0.09 -3.90 10.01 22.20 0.22 -3.68 16 12 C -0.23 -10.32 8.59 22.59 0.19 -10.13 16 13 C 0.16 7.22 6.26 38.15 0.24 7.46 16 14 N -0.64 -22.28 5.47 -185.32 -1.01 -23.30 16 15 C 0.38 12.30 7.18 132.98 0.95 13.25 16 16 C 0.00 -0.02 11.08 84.92 0.94 0.92 16 17 N -0.38 -9.47 10.48 -194.45 -2.04 -11.51 16 18 C -0.02 -0.55 11.20 84.71 0.95 0.40 16 19 C 0.29 8.87 8.44 84.68 0.71 9.59 16 20 F -0.11 -3.25 17.30 44.97 0.78 -2.48 16 21 N -0.55 -20.39 7.39 -193.64 -1.43 -21.82 16 22 C -0.20 -10.25 8.59 22.86 0.20 -10.05 16 23 H 0.29 13.41 8.30 -92.71 -0.77 12.64 16 24 H 0.10 4.66 8.06 -2.91 -0.02 4.63 16 25 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 26 H 0.11 4.59 6.37 -2.91 -0.02 4.57 16 27 H 0.43 12.05 8.82 -92.70 -0.82 11.23 16 28 H 0.21 3.42 8.06 -2.91 -0.02 3.40 16 29 H 0.21 3.25 8.06 -2.91 -0.02 3.23 16 30 H 0.11 5.68 6.30 -2.91 -0.02 5.66 16 Total: -1.00 -62.89 273.40 4.11 -58.78 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: 0.38 Total: 26.81 kcal Atomic # 6 Polarization: -28.83 SS G_CDS: 5.17 Total: -23.66 kcal Atomic # 7 Polarization: -94.75 SS G_CDS: -4.24 Total: -98.99 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.78 Total: -2.48 kcal Atomic # 14 Polarization: 37.51 SS G_CDS: 2.03 Total: 39.54 kcal Total: -62.89 4.11 -58.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693457747.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.348 kcal (2) G-P(sol) polarization free energy of solvation -62.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds