Wall clock time and date at job start Mon Mar 30 2020 06:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30898 * 1 3 3 Si 1.86800 * 120.00237 * 2 1 4 4 H 1.48497 * 109.47329 * 264.98663 * 3 2 1 5 5 H 1.48506 * 109.47050 * 24.99099 * 3 2 1 6 6 H 1.48503 * 109.46940 * 144.98952 * 3 2 1 7 7 C 1.39869 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00164 * 199.27280 * 7 2 1 9 9 C 1.41126 * 119.99690 * 19.26263 * 7 2 1 10 10 C 1.40888 * 120.15748 * 23.89043 * 9 7 2 11 11 C 1.36336 * 119.83689 * 180.26882 * 10 9 7 12 12 C 1.39558 * 120.16021 * 359.46249 * 11 10 9 13 13 N 1.38975 * 119.84077 * 180.27380 * 12 11 10 14 14 C 1.38627 * 119.99925 * 137.58600 * 13 12 11 15 15 C 1.39653 * 120.51685 * 353.01365 * 14 13 12 16 16 C 1.38102 * 118.38925 * 179.77951 * 15 14 13 17 17 N 1.32555 * 119.23005 * 0.49682 * 16 15 14 18 18 C 1.32031 * 120.98614 * 359.74433 * 17 16 15 19 19 F 1.35092 * 119.12192 * 180.02562 * 18 17 16 20 20 N 1.32011 * 121.76418 * 359.97438 * 18 17 16 21 21 C 1.39558 * 120.32035 * 0.29401 * 12 11 10 22 22 C 1.36340 * 120.16179 * 359.97438 * 21 12 11 23 23 H 0.97006 * 119.99491 * 0.02562 * 1 2 3 24 24 H 1.08006 * 120.08491 * 0.02562 * 10 9 7 25 25 H 1.08001 * 119.91986 * 179.73389 * 11 10 9 26 26 H 0.96997 * 119.99500 * 317.58220 * 13 12 11 27 27 H 1.08004 * 120.80561 * 0.02562 * 15 14 13 28 28 H 1.07998 * 120.38730 * 180.23860 * 16 15 14 29 29 H 1.07999 * 119.92396 * 179.97438 * 21 12 11 30 30 H 1.07998 * 120.08501 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.5965 1.9852 -1.3947 5 1 1.3916 2.6809 0.5915 6 1 3.4836 1.4729 0.8033 7 6 2.0083 -1.2113 -0.0005 8 1 3.0429 -1.2377 0.3081 9 6 1.3619 -2.3991 -0.4043 10 6 0.2411 -2.3406 -1.2559 11 6 -0.3817 -3.4918 -1.6375 12 6 0.0952 -4.7266 -1.1956 13 7 -0.5413 -5.8963 -1.5932 14 6 0.2084 -7.0000 -1.9693 15 6 1.5963 -6.9058 -2.0928 16 6 2.3004 -8.0339 -2.4657 17 7 1.6414 -9.1593 -2.7027 18 6 0.3278 -9.2161 -2.5823 19 9 -0.3056 -10.3828 -2.8326 20 7 -0.3833 -8.1635 -2.2230 21 6 1.2080 -4.7926 -0.3560 22 6 1.8376 -3.6493 0.0381 23 1 -0.4850 0.8401 -0.0004 24 1 -0.1263 -1.3859 -1.6025 25 1 -1.2436 -3.4482 -2.2868 26 1 -1.5102 -5.9403 -1.6075 27 1 2.1070 -5.9745 -1.8975 28 1 3.3750 -7.9984 -2.5672 29 1 1.5714 -5.7517 -0.0175 30 1 2.6989 -3.7018 0.6875 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697225831.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:16 Heat of formation + Delta-G solvation = 38.070152 kcal Electronic energy + Delta-G solvation = -17788.640500 eV Core-core repulsion = 14691.666026 eV Total energy + Delta-G solvation = -3096.974474 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 259.082 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.95992 -40.72023 -38.32907 -35.82977 -33.79128 -32.73685 -30.86951 -29.61207 -29.03196 -25.37353 -24.18911 -23.22535 -21.27399 -20.80394 -18.35990 -18.14467 -17.62011 -16.34306 -16.02294 -15.98430 -15.44295 -15.09900 -14.21377 -13.98893 -13.81228 -13.59949 -13.29934 -12.91128 -12.36306 -12.15381 -11.93841 -11.34396 -11.26397 -11.17444 -10.82301 -10.66877 -10.08876 -9.94714 -9.68228 -9.35641 -9.17016 -8.40445 -7.86102 -7.18145 -7.02222 -4.54292 1.09550 1.36134 2.48760 2.78209 2.93269 2.95434 2.96956 3.06199 3.71251 3.74579 3.90794 4.34606 4.48750 4.96247 5.37051 5.42595 5.73151 5.84694 5.94815 5.99861 6.33663 6.63361 6.71719 6.79703 6.93368 6.94047 7.23628 7.29715 7.42055 7.75642 7.84098 7.92290 7.97996 8.23894 8.36447 8.60985 8.69403 9.90244 Molecular weight = 259.08amu Principal moments of inertia in cm(-1) A = 0.056737 B = 0.004087 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.382661 B = 6850.042642 C = 7176.337930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.450 4.450 8 H 0.083 0.917 9 C 0.110 3.890 10 C -0.154 4.154 11 C -0.097 4.097 12 C -0.021 4.021 13 N -0.613 5.613 14 C 0.462 3.538 15 C -0.291 4.291 16 C 0.192 3.808 17 N -0.590 5.590 18 C 0.528 3.472 19 F -0.089 7.089 20 N -0.609 5.609 21 C -0.093 4.093 22 C -0.214 4.214 23 H 0.285 0.715 24 H 0.123 0.877 25 H 0.094 0.906 26 H 0.406 0.594 27 H 0.165 0.835 28 H 0.174 0.826 29 H 0.096 0.904 30 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.838 -5.288 -2.772 6.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.184 1.184 7 C -0.478 4.478 8 H 0.101 0.899 9 C 0.107 3.893 10 C -0.174 4.174 11 C -0.118 4.118 12 C -0.114 4.114 13 N -0.233 5.233 14 C 0.218 3.782 15 C -0.319 4.319 16 C 0.034 3.966 17 N -0.317 5.317 18 C 0.246 3.754 19 F -0.069 7.069 20 N -0.342 5.342 21 C -0.113 4.113 22 C -0.234 4.234 23 H 0.096 0.904 24 H 0.141 0.859 25 H 0.112 0.888 26 H 0.242 0.758 27 H 0.182 0.818 28 H 0.191 0.809 29 H 0.114 0.886 30 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.241 -5.819 -2.876 6.609 hybrid contribution -0.008 1.221 0.195 1.237 sum 1.234 -4.598 -2.681 5.464 Atomic orbital electron populations 1.69842 1.07739 1.29880 1.33041 1.25996 0.94773 1.01729 0.91966 0.86260 0.80449 0.80001 0.79767 1.18946 1.20164 1.18440 1.19652 0.98913 0.91425 1.37831 0.89905 1.17694 0.90889 0.92140 0.88574 1.20941 0.99186 0.96684 1.00625 1.20289 0.99864 0.91640 0.99986 1.17005 1.02312 0.83380 1.08718 1.41575 1.08256 1.08600 1.64912 1.18244 0.88726 0.85296 0.85973 1.22626 0.94193 1.03198 1.11862 1.22654 1.00150 0.85514 0.88300 1.67773 1.07425 1.30846 1.25677 1.18479 0.84342 0.81042 0.91544 1.91664 1.81249 1.43216 1.90724 1.67027 1.42029 0.99431 1.25741 1.20279 0.96468 0.97518 0.97052 1.20609 1.04097 0.92195 1.06473 0.90394 0.85935 0.88796 0.75786 0.81805 0.80875 0.88574 0.88212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.31 10.99 55.54 0.61 -17.70 16 2 C 0.08 1.71 5.11 -17.34 -0.09 1.62 16 3 Si 0.91 16.93 29.60 -169.99 -5.03 11.89 16 4 H -0.26 -4.89 7.11 56.52 0.40 -4.48 16 5 H -0.28 -5.06 7.11 56.52 0.40 -4.66 16 6 H -0.26 -4.80 7.11 56.52 0.40 -4.39 16 7 C -0.45 -10.70 9.03 -37.88 -0.34 -11.05 16 8 H 0.08 1.89 7.91 -52.49 -0.42 1.47 16 9 C 0.11 2.61 5.58 -106.79 -0.60 2.01 16 10 C -0.15 -3.56 8.64 -39.26 -0.34 -3.90 16 11 C -0.10 -2.01 9.90 -39.77 -0.39 -2.41 16 12 C -0.02 -0.41 5.88 -83.64 -0.49 -0.90 16 13 N -0.61 -10.64 5.43 -9.72 -0.05 -10.69 16 14 C 0.46 7.96 7.47 -154.70 -1.16 6.80 16 15 C -0.29 -4.54 8.12 -39.10 -0.32 -4.86 16 16 C 0.19 2.66 11.29 -17.29 -0.20 2.47 16 17 N -0.59 -9.42 10.45 -15.02 -0.16 -9.58 16 18 C 0.53 8.93 9.46 -91.76 -0.87 8.07 16 19 F -0.09 -1.42 17.32 2.25 0.04 -1.38 16 20 N -0.61 -10.70 10.48 -14.14 -0.15 -10.85 16 21 C -0.09 -1.84 7.29 -39.77 -0.29 -2.13 16 22 C -0.21 -4.60 9.74 -39.26 -0.38 -4.98 16 23 H 0.29 6.07 8.30 -40.82 -0.34 5.73 16 24 H 0.12 2.93 6.16 -52.48 -0.32 2.61 16 25 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 26 H 0.41 6.43 8.94 -40.82 -0.37 6.07 16 27 H 0.16 2.59 5.47 -52.48 -0.29 2.31 16 28 H 0.17 1.71 8.06 -52.49 -0.42 1.29 16 29 H 0.10 1.74 6.67 -52.49 -0.35 1.39 16 30 H 0.10 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 270.73 15.07 4.08 4.08 Total: -1.00 -24.97 270.73 -8.26 -33.24 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -2.14 Total: 10.24 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -5.46 Total: -9.25 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: 0.25 Total: -48.82 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 16.93 SS G_CDS: -5.03 Total: 11.89 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -24.97 -8.26 -33.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697225831.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.305 kcal (2) G-P(sol) polarization free energy of solvation -24.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds