Wall clock time and date at job start Mon Mar 30 2020 06:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30898 * 1 3 3 Si 1.86800 * 120.00237 * 2 1 4 4 H 1.48497 * 109.47329 * 264.98663 * 3 2 1 5 5 H 1.48506 * 109.47050 * 24.99099 * 3 2 1 6 6 H 1.48503 * 109.46940 * 144.98952 * 3 2 1 7 7 C 1.39869 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00164 * 199.27280 * 7 2 1 9 9 C 1.41126 * 119.99690 * 19.26263 * 7 2 1 10 10 C 1.40888 * 120.15748 * 23.89043 * 9 7 2 11 11 C 1.36336 * 119.83689 * 180.26882 * 10 9 7 12 12 C 1.39558 * 120.16021 * 359.46249 * 11 10 9 13 13 N 1.38975 * 119.84077 * 180.27380 * 12 11 10 14 14 C 1.38627 * 119.99925 * 137.58600 * 13 12 11 15 15 C 1.39653 * 120.51685 * 353.01365 * 14 13 12 16 16 C 1.38102 * 118.38925 * 179.77951 * 15 14 13 17 17 N 1.32555 * 119.23005 * 0.49682 * 16 15 14 18 18 C 1.32031 * 120.98614 * 359.74433 * 17 16 15 19 19 F 1.35092 * 119.12192 * 180.02562 * 18 17 16 20 20 N 1.32011 * 121.76418 * 359.97438 * 18 17 16 21 21 C 1.39558 * 120.32035 * 0.29401 * 12 11 10 22 22 C 1.36340 * 120.16179 * 359.97438 * 21 12 11 23 23 H 0.97006 * 119.99491 * 0.02562 * 1 2 3 24 24 H 1.08006 * 120.08491 * 0.02562 * 10 9 7 25 25 H 1.08001 * 119.91986 * 179.73389 * 11 10 9 26 26 H 0.96997 * 119.99500 * 317.58220 * 13 12 11 27 27 H 1.08004 * 120.80561 * 0.02562 * 15 14 13 28 28 H 1.07998 * 120.38730 * 180.23860 * 16 15 14 29 29 H 1.07999 * 119.92396 * 179.97438 * 21 12 11 30 30 H 1.07998 * 120.08501 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.5965 1.9852 -1.3947 5 1 1.3916 2.6809 0.5915 6 1 3.4836 1.4729 0.8033 7 6 2.0083 -1.2113 -0.0005 8 1 3.0429 -1.2377 0.3081 9 6 1.3619 -2.3991 -0.4043 10 6 0.2411 -2.3406 -1.2559 11 6 -0.3817 -3.4918 -1.6375 12 6 0.0952 -4.7266 -1.1956 13 7 -0.5413 -5.8963 -1.5932 14 6 0.2084 -7.0000 -1.9693 15 6 1.5963 -6.9058 -2.0928 16 6 2.3004 -8.0339 -2.4657 17 7 1.6414 -9.1593 -2.7027 18 6 0.3278 -9.2161 -2.5823 19 9 -0.3056 -10.3828 -2.8326 20 7 -0.3833 -8.1635 -2.2230 21 6 1.2080 -4.7926 -0.3560 22 6 1.8376 -3.6493 0.0381 23 1 -0.4850 0.8401 -0.0004 24 1 -0.1263 -1.3859 -1.6025 25 1 -1.2436 -3.4482 -2.2868 26 1 -1.5102 -5.9403 -1.6075 27 1 2.1070 -5.9745 -1.8975 28 1 3.3750 -7.9984 -2.5672 29 1 1.5714 -5.7517 -0.0175 30 1 2.6989 -3.7018 0.6875 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697225831.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:16 Heat of formation + Delta-G solvation = 25.864295 kcal Electronic energy + Delta-G solvation = -17789.169786 eV Core-core repulsion = 14691.666026 eV Total energy + Delta-G solvation = -3097.503760 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 259.082 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.23086 -42.03223 -39.90001 -37.32476 -35.33749 -34.14783 -32.29175 -31.18402 -30.62746 -26.97588 -25.46099 -24.63890 -22.89761 -22.38895 -19.70318 -19.47596 -19.29462 -17.64067 -17.52829 -17.29684 -17.00705 -16.45053 -15.73178 -15.48916 -15.10510 -14.84648 -14.66137 -14.49296 -13.97498 -13.75357 -13.50035 -12.85492 -12.79403 -12.60657 -12.34388 -12.10807 -11.67230 -11.46417 -11.23112 -10.90101 -10.45868 -9.89238 -9.52337 -8.77709 -8.65310 -6.28317 -0.17918 0.07932 0.90103 1.09289 1.42297 1.51183 1.53964 1.66789 2.20877 2.41674 2.58489 2.73041 3.29224 3.66300 3.70360 4.21138 4.34458 4.36503 4.55567 4.63673 4.91660 5.07135 5.09958 5.18995 5.30102 5.51758 5.61606 5.76250 5.84336 6.04745 6.23678 6.36581 6.52777 6.63749 6.87332 6.89907 7.03932 8.27078 Molecular weight = 259.08amu Principal moments of inertia in cm(-1) A = 0.056737 B = 0.004087 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.382661 B = 6850.042642 C = 7176.337930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.039 3.961 3 Si 0.979 3.021 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.257 1.257 7 C -0.487 4.487 8 H 0.082 0.918 9 C 0.081 3.919 10 C -0.174 4.174 11 C -0.102 4.102 12 C 0.001 3.999 13 N -0.618 5.618 14 C 0.452 3.548 15 C -0.295 4.295 16 C 0.208 3.792 17 N -0.592 5.592 18 C 0.519 3.481 19 F -0.086 7.086 20 N -0.621 5.621 21 C -0.090 4.090 22 C -0.220 4.220 23 H 0.290 0.710 24 H 0.106 0.894 25 H 0.111 0.889 26 H 0.412 0.588 27 H 0.165 0.835 28 H 0.219 0.781 29 H 0.117 0.883 30 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.855 -6.258 -3.103 7.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.178 4.178 3 Si 0.800 3.200 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.181 1.181 7 C -0.516 4.516 8 H 0.100 0.900 9 C 0.078 3.922 10 C -0.194 4.194 11 C -0.122 4.122 12 C -0.093 4.093 13 N -0.240 5.240 14 C 0.209 3.791 15 C -0.322 4.322 16 C 0.050 3.950 17 N -0.319 5.319 18 C 0.237 3.763 19 F -0.066 7.066 20 N -0.354 5.354 21 C -0.110 4.110 22 C -0.240 4.240 23 H 0.101 0.899 24 H 0.124 0.876 25 H 0.129 0.871 26 H 0.250 0.750 27 H 0.182 0.818 28 H 0.236 0.764 29 H 0.135 0.865 30 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.250 -6.829 -3.215 7.877 hybrid contribution -0.345 1.256 0.231 1.323 sum 1.905 -5.574 -2.984 6.603 Atomic orbital electron populations 1.69887 1.09009 1.30894 1.34292 1.26737 0.95398 1.04534 0.91127 0.85245 0.79116 0.75942 0.79691 1.18694 1.19588 1.18081 1.19879 0.99229 0.92575 1.39879 0.89961 1.18001 0.91630 0.93164 0.89357 1.20881 1.00013 0.96860 1.01692 1.20457 1.00251 0.91496 1.00001 1.16999 1.01461 0.83768 1.07077 1.41419 1.08585 1.08107 1.65848 1.18396 0.89377 0.85019 0.86351 1.22724 0.93514 1.03891 1.12106 1.23372 1.01887 0.83990 0.85786 1.67912 1.06906 1.31640 1.25402 1.18651 0.84807 0.81063 0.91792 1.91669 1.81313 1.42969 1.90666 1.66964 1.42651 0.99721 1.26033 1.20435 0.96220 0.97812 0.96514 1.20782 1.04533 0.92088 1.06554 0.89895 0.87615 0.87095 0.75025 0.81804 0.76440 0.86490 0.87303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.30 10.99 21.82 0.24 -39.06 16 2 C 0.04 1.78 5.11 85.23 0.44 2.21 16 3 Si 0.98 34.99 29.60 68.60 2.03 37.02 16 4 H -0.26 -9.17 7.11 99.48 0.71 -8.47 16 5 H -0.27 -9.33 7.11 99.48 0.71 -8.62 16 6 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 7 C -0.49 -23.75 9.03 23.37 0.21 -23.54 16 8 H 0.08 3.84 7.91 -2.91 -0.02 3.81 16 9 C 0.08 3.92 5.58 -21.27 -0.12 3.80 16 10 C -0.17 -8.22 8.64 22.47 0.19 -8.02 16 11 C -0.10 -4.17 9.90 22.14 0.22 -3.95 16 12 C 0.00 0.03 5.88 38.65 0.23 0.25 16 13 N -0.62 -20.35 5.43 -184.66 -1.00 -21.36 16 14 C 0.45 14.57 7.47 133.15 0.99 15.57 16 15 C -0.29 -8.33 8.12 22.58 0.18 -8.15 16 16 C 0.21 4.98 11.29 84.55 0.95 5.93 16 17 N -0.59 -17.07 10.45 -201.44 -2.10 -19.17 16 18 C 0.52 16.41 9.46 180.75 1.71 18.12 16 19 F -0.09 -2.61 17.32 44.97 0.78 -1.83 16 20 N -0.62 -20.59 10.48 -198.65 -2.08 -22.67 16 21 C -0.09 -3.40 7.29 22.15 0.16 -3.24 16 22 C -0.22 -9.37 9.74 22.48 0.22 -9.15 16 23 H 0.29 12.67 8.30 -92.70 -0.77 11.90 16 24 H 0.11 5.27 6.16 -2.91 -0.02 5.26 16 25 H 0.11 4.07 8.06 -2.91 -0.02 4.05 16 26 H 0.41 12.47 8.94 -92.71 -0.83 11.64 16 27 H 0.16 4.72 5.47 -2.91 -0.02 4.70 16 28 H 0.22 3.17 8.06 -2.91 -0.02 3.15 16 29 H 0.12 3.93 6.67 -2.91 -0.02 3.91 16 30 H 0.11 4.33 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -53.46 270.73 3.63 -49.83 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: 0.38 Total: 27.41 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: 5.39 Total: -10.16 kcal Atomic # 7 Polarization: -97.32 SS G_CDS: -4.95 Total: -102.27 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.78 Total: -1.83 kcal Atomic # 14 Polarization: 34.99 SS G_CDS: 2.03 Total: 37.02 kcal Total: -53.46 3.63 -49.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697225831.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.693 kcal (2) G-P(sol) polarization free energy of solvation -53.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds