Wall clock time and date at job start Mon Mar 30 2020 06:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38424 * 119.82649 * 2 1 4 4 C 1.37869 * 120.16961 * 179.97438 * 3 2 1 5 5 C 1.39850 * 119.82807 * 0.02876 * 4 3 2 6 6 C 1.47205 * 120.17215 * 179.97438 * 5 4 3 7 7 C 1.34808 * 119.99889 * 359.97438 * 6 5 4 8 8 C 1.46427 * 120.00060 * 179.72394 * 7 6 5 9 9 O 1.21703 * 119.99940 * 0.27909 * 8 7 6 10 10 N 1.34777 * 120.00208 * 180.27992 * 8 7 6 11 11 C 1.46499 * 120.00065 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.47138 * 179.97438 * 11 10 8 13 13 H 1.08001 * 120.00043 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00213 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99613 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00201 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46807 * 60.00091 * 16 14 12 18 18 H 1.48498 * 109.47276 * 180.02562 * 16 14 12 19 19 H 1.48492 * 109.47173 * 300.00187 * 16 14 12 20 20 C 1.39818 * 119.65891 * 0.25074 * 5 4 3 21 21 C 1.50701 * 120.08495 * 179.72774 * 20 5 4 22 22 C 1.37919 * 119.82489 * 359.44551 * 20 5 4 23 23 H 1.08997 * 109.46937 * 89.99641 * 1 2 3 24 24 H 1.09000 * 109.46983 * 209.99688 * 1 2 3 25 25 H 1.08998 * 109.46982 * 329.99470 * 1 2 3 26 26 H 1.07996 * 119.91587 * 0.02562 * 3 2 1 27 27 H 1.08006 * 120.08456 * 180.02562 * 4 3 2 28 28 H 1.08001 * 120.00393 * 180.02562 * 6 5 4 29 29 H 1.08002 * 120.00248 * 0.02562 * 7 6 5 30 30 H 0.97000 * 120.00140 * 359.97438 * 10 8 7 31 31 H 1.09000 * 109.47602 * 299.99940 * 11 10 8 32 32 H 1.08998 * 109.47023 * 59.99702 * 11 10 8 33 33 H 0.96997 * 119.99510 * 180.02562 * 15 14 12 34 34 H 1.09004 * 109.47160 * 89.99856 * 21 20 5 35 35 H 1.09006 * 109.47120 * 209.99494 * 21 20 5 36 36 H 1.08998 * 109.47088 * 329.99832 * 21 20 5 37 37 H 1.08000 * 119.91382 * 180.32314 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1956 1.2009 0.0000 4 6 3.5742 1.2091 0.0005 5 6 4.2771 0.0001 0.0005 6 6 5.7491 0.0001 0.0005 7 6 6.4232 1.1675 0.0000 8 6 7.8874 1.1676 0.0061 9 8 8.4960 0.1136 0.0065 10 7 8.5613 2.3348 0.0114 11 6 10.0263 2.3348 0.0169 12 6 10.5286 3.7556 0.0214 13 1 9.8268 4.5765 0.0207 14 6 11.8841 4.0076 0.0276 15 7 12.7388 3.0079 0.0289 16 14 12.5068 5.7687 0.0339 17 1 12.0068 6.4661 1.2459 18 1 13.9918 5.7688 0.0394 19 1 12.0168 6.4713 -1.1790 20 6 3.5744 -1.2087 -0.0055 21 6 4.3221 -2.5171 -0.0118 22 6 2.1953 -1.2004 0.0004 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 1.6514 2.1337 0.0004 27 1 4.1100 2.1469 0.0010 28 1 6.2892 -0.9352 0.0000 29 1 5.8832 2.1029 0.0001 30 1 8.0763 3.1748 0.0107 31 1 10.3863 1.8189 0.9070 32 1 10.3930 1.8229 -0.8728 33 1 13.6924 3.1852 0.0336 34 1 4.5024 -2.8376 1.0144 35 1 3.7296 -3.2717 -0.5293 36 1 5.2751 -2.3885 -0.5250 37 1 1.6511 -2.1333 0.0011 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701270665.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:53 Heat of formation + Delta-G solvation = -18.455521 kcal Electronic energy + Delta-G solvation = -17672.836058 eV Core-core repulsion = 14800.411096 eV Total energy + Delta-G solvation = -2872.424963 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.79817 -38.66718 -34.83569 -34.11240 -32.95309 -32.29319 -31.03068 -27.86094 -27.36249 -26.40445 -23.58765 -22.61377 -21.36573 -20.07471 -19.07157 -17.41405 -16.36552 -15.86772 -15.26133 -15.10386 -14.76326 -14.35016 -14.17554 -14.13780 -13.53106 -13.42661 -13.26768 -12.95967 -12.58853 -12.21951 -12.06630 -11.98118 -11.87552 -11.77599 -11.17064 -10.98046 -10.88770 -10.87697 -10.31008 -10.06629 -9.40649 -9.14388 -8.91255 -8.72491 -8.14481 -7.79553 -6.15727 -4.22748 0.59630 1.25167 2.12995 3.26057 3.30678 3.32295 3.61618 4.04814 4.11119 4.37638 4.55236 4.63047 4.72375 4.88935 5.01973 5.11166 5.20252 5.26289 5.31231 5.34054 5.47511 5.53573 5.56376 5.70320 5.72194 5.95988 5.99872 6.11691 6.28633 6.40293 6.55164 6.69815 6.84724 7.32965 7.44305 7.52764 7.68197 7.97927 8.63894 8.78671 9.10961 9.43758 10.94546 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.039677 B = 0.003172 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.530725 B = 8826.384418 C = 9506.155765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.082 4.082 3 C -0.128 4.128 4 C -0.098 4.098 5 C -0.069 4.069 6 C -0.051 4.051 7 C -0.187 4.187 8 C 0.526 3.474 9 O -0.561 6.561 10 N -0.705 5.705 11 C 0.248 3.752 12 C -0.544 4.544 13 H 0.063 0.937 14 C 0.063 3.937 15 N -0.886 5.886 16 Si 0.905 3.095 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 C -0.062 4.062 21 C -0.123 4.123 22 C -0.125 4.125 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.122 0.878 27 H 0.129 0.871 28 H 0.137 0.863 29 H 0.124 0.876 30 H 0.391 0.609 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.266 0.734 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.550 -5.494 -0.076 24.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.082 4.082 3 C -0.146 4.146 4 C -0.116 4.116 5 C -0.069 4.069 6 C -0.071 4.071 7 C -0.208 4.208 8 C 0.313 3.687 9 O -0.442 6.442 10 N -0.352 5.352 11 C 0.128 3.872 12 C -0.583 4.583 13 H 0.081 0.919 14 C -0.140 4.140 15 N -0.523 5.523 16 Si 0.732 3.268 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.062 4.062 21 C -0.179 4.179 22 C -0.143 4.143 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.140 0.860 27 H 0.147 0.853 28 H 0.154 0.846 29 H 0.141 0.859 30 H 0.224 0.776 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -22.849 -6.256 -0.074 23.690 hybrid contribution 0.213 1.482 0.008 1.497 sum -22.636 -4.774 -0.066 23.134 Atomic orbital electron populations 1.20804 0.91262 1.02738 1.02298 1.20010 0.96010 0.93165 0.99019 1.20932 0.94024 0.97523 1.02123 1.21428 0.94138 0.97636 0.98402 1.18937 0.92771 0.92871 1.02313 1.22306 0.91338 0.99207 0.94224 1.23219 0.94516 0.98840 1.04188 1.18309 0.87426 0.84767 0.78231 1.90762 1.70409 1.31355 1.51707 1.46399 1.10469 1.06862 1.71431 1.19128 0.72855 0.97424 0.97831 1.21195 0.92208 0.91506 1.53345 0.91923 1.24957 0.96575 0.97812 0.94688 1.69969 1.02541 1.30995 1.48809 0.86461 0.77731 0.83949 0.78693 1.20053 1.21058 1.20059 1.20092 0.93593 0.94739 0.97791 1.20902 1.00622 0.93544 1.02834 1.20817 0.93295 0.97556 1.02586 0.91156 0.91591 0.91527 0.85956 0.85345 0.84556 0.85852 0.77587 0.95400 0.95406 0.92380 0.90718 0.91428 0.90600 0.85998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.00 36.01 0.36 -0.39 16 2 C -0.08 -0.77 5.89 -104.50 -0.62 -1.39 16 3 C -0.13 -1.26 9.68 -39.65 -0.38 -1.65 16 4 C -0.10 -1.11 9.41 -39.11 -0.37 -1.47 16 5 C -0.07 -0.87 5.87 -105.06 -0.62 -1.48 16 6 C -0.05 -0.74 8.89 -37.16 -0.33 -1.07 16 7 C -0.19 -2.93 9.41 -37.50 -0.35 -3.28 16 8 C 0.53 11.02 7.74 -12.96 -0.10 10.92 16 9 O -0.56 -13.94 16.23 5.19 0.08 -13.86 16 10 N -0.70 -15.35 5.54 -62.88 -0.35 -15.69 16 11 C 0.25 6.72 5.43 -5.19 -0.03 6.69 16 12 C -0.54 -14.95 9.28 -34.44 -0.32 -15.27 16 13 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 14 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 15 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 16 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 C -0.06 -0.70 5.92 -104.15 -0.62 -1.31 16 21 C -0.12 -1.17 9.52 36.01 0.34 -0.83 16 22 C -0.12 -1.22 9.33 -39.65 -0.37 -1.59 16 23 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 25 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 26 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 27 H 0.13 1.28 6.17 -52.48 -0.32 0.96 16 28 H 0.14 2.08 5.82 -52.49 -0.31 1.77 16 29 H 0.12 1.55 6.07 -52.49 -0.32 1.23 16 30 H 0.39 7.25 8.30 -40.82 -0.34 6.91 16 31 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 36 H 0.08 0.79 6.33 -51.93 -0.33 0.46 16 37 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 319.29 15.07 4.81 4.81 Total: -1.00 -32.78 319.29 -8.18 -40.96 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -4.95 Total: 3.87 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -3.50 Total: -10.45 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: 0.39 Total: -41.30 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: 0.08 Total: -13.86 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.78 -8.18 -40.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701270665.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.501 kcal (2) G-P(sol) polarization free energy of solvation -32.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds