Wall clock time and date at job start Mon Mar 30 2020 06:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38424 * 119.82649 * 2 1 4 4 C 1.37869 * 120.16961 * 179.97438 * 3 2 1 5 5 C 1.39850 * 119.82807 * 0.02876 * 4 3 2 6 6 C 1.47205 * 120.17215 * 179.97438 * 5 4 3 7 7 C 1.34808 * 119.99889 * 359.97438 * 6 5 4 8 8 C 1.46427 * 120.00060 * 179.72394 * 7 6 5 9 9 O 1.21703 * 119.99940 * 0.27909 * 8 7 6 10 10 N 1.34777 * 120.00208 * 180.27992 * 8 7 6 11 11 C 1.46499 * 120.00065 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.47138 * 179.97438 * 11 10 8 13 13 H 1.08001 * 120.00043 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00213 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99613 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00201 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46807 * 60.00091 * 16 14 12 18 18 H 1.48498 * 109.47276 * 180.02562 * 16 14 12 19 19 H 1.48492 * 109.47173 * 300.00187 * 16 14 12 20 20 C 1.39818 * 119.65891 * 0.25074 * 5 4 3 21 21 C 1.50701 * 120.08495 * 179.72774 * 20 5 4 22 22 C 1.37919 * 119.82489 * 359.44551 * 20 5 4 23 23 H 1.08997 * 109.46937 * 89.99641 * 1 2 3 24 24 H 1.09000 * 109.46983 * 209.99688 * 1 2 3 25 25 H 1.08998 * 109.46982 * 329.99470 * 1 2 3 26 26 H 1.07996 * 119.91587 * 0.02562 * 3 2 1 27 27 H 1.08006 * 120.08456 * 180.02562 * 4 3 2 28 28 H 1.08001 * 120.00393 * 180.02562 * 6 5 4 29 29 H 1.08002 * 120.00248 * 0.02562 * 7 6 5 30 30 H 0.97000 * 120.00140 * 359.97438 * 10 8 7 31 31 H 1.09000 * 109.47602 * 299.99940 * 11 10 8 32 32 H 1.08998 * 109.47023 * 59.99702 * 11 10 8 33 33 H 0.96997 * 119.99510 * 180.02562 * 15 14 12 34 34 H 1.09004 * 109.47160 * 89.99856 * 21 20 5 35 35 H 1.09006 * 109.47120 * 209.99494 * 21 20 5 36 36 H 1.08998 * 109.47088 * 329.99832 * 21 20 5 37 37 H 1.08000 * 119.91382 * 180.32314 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1956 1.2009 0.0000 4 6 3.5742 1.2091 0.0005 5 6 4.2771 0.0001 0.0005 6 6 5.7491 0.0001 0.0005 7 6 6.4232 1.1675 0.0000 8 6 7.8874 1.1676 0.0061 9 8 8.4960 0.1136 0.0065 10 7 8.5613 2.3348 0.0114 11 6 10.0263 2.3348 0.0169 12 6 10.5286 3.7556 0.0214 13 1 9.8268 4.5765 0.0207 14 6 11.8841 4.0076 0.0276 15 7 12.7388 3.0079 0.0289 16 14 12.5068 5.7687 0.0339 17 1 12.0068 6.4661 1.2459 18 1 13.9918 5.7688 0.0394 19 1 12.0168 6.4713 -1.1790 20 6 3.5744 -1.2087 -0.0055 21 6 4.3221 -2.5171 -0.0118 22 6 2.1953 -1.2004 0.0004 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 1.6514 2.1337 0.0004 27 1 4.1100 2.1469 0.0010 28 1 6.2892 -0.9352 0.0000 29 1 5.8832 2.1029 0.0001 30 1 8.0763 3.1748 0.0107 31 1 10.3863 1.8189 0.9070 32 1 10.3930 1.8229 -0.8728 33 1 13.6924 3.1852 0.0336 34 1 4.5024 -2.8376 1.0144 35 1 3.7296 -3.2717 -0.5293 36 1 5.2751 -2.3885 -0.5250 37 1 1.6511 -2.1333 0.0011 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701270665.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:53 Heat of formation + Delta-G solvation = -38.904089 kcal Electronic energy + Delta-G solvation = -17673.722775 eV Core-core repulsion = 14800.411096 eV Total energy + Delta-G solvation = -2873.311679 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.79967 -40.22432 -36.27138 -35.62520 -34.37565 -33.80321 -31.97908 -29.60325 -28.18725 -27.54553 -25.16929 -23.81426 -22.67929 -21.28662 -20.39922 -18.98253 -17.94116 -17.25676 -16.60903 -16.56209 -16.08452 -15.92136 -15.50867 -14.99272 -14.76695 -14.31560 -14.06709 -14.03049 -13.97062 -13.93552 -13.49892 -12.98277 -12.87907 -12.82527 -12.73889 -12.67803 -12.24540 -11.95673 -11.73524 -11.52996 -11.11753 -10.92511 -10.80684 -9.89390 -9.69348 -9.00323 -8.30151 -6.47343 -0.43608 0.47015 1.03037 1.42551 1.47190 1.55372 2.32113 2.34932 2.60302 2.89950 3.04593 3.71391 3.77834 3.93016 3.96443 4.14132 4.27423 4.39533 4.43767 4.66079 4.75569 4.78344 4.86509 4.89238 5.02252 5.04805 5.11505 5.20993 5.21555 5.32260 5.35235 5.45773 5.54608 5.66741 5.69585 5.73387 5.82767 6.07265 6.62808 6.88102 7.21431 7.44382 8.82136 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.039677 B = 0.003172 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.530725 B = 8826.384418 C = 9506.155765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.075 4.075 3 C -0.137 4.137 4 C -0.100 4.100 5 C -0.102 4.102 6 C -0.022 4.022 7 C -0.208 4.208 8 C 0.524 3.476 9 O -0.611 6.611 10 N -0.700 5.700 11 C 0.265 3.735 12 C -0.558 4.558 13 H 0.085 0.915 14 C 0.003 3.997 15 N -0.931 5.931 16 Si 0.987 3.013 17 H -0.261 1.261 18 H -0.285 1.285 19 H -0.261 1.261 20 C -0.067 4.067 21 C -0.124 4.124 22 C -0.133 4.133 23 H 0.081 0.919 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.146 0.854 27 H 0.139 0.861 28 H 0.122 0.878 29 H 0.159 0.841 30 H 0.410 0.590 31 H -0.012 1.012 32 H -0.012 1.012 33 H 0.269 0.731 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.060 0.940 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.744 -3.856 -0.069 27.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.075 4.075 3 C -0.154 4.154 4 C -0.118 4.118 5 C -0.102 4.102 6 C -0.042 4.042 7 C -0.228 4.228 8 C 0.314 3.686 9 O -0.496 6.496 10 N -0.349 5.349 11 C 0.142 3.858 12 C -0.596 4.596 13 H 0.103 0.897 14 C -0.197 4.197 15 N -0.570 5.570 16 Si 0.810 3.190 17 H -0.186 1.186 18 H -0.210 1.210 19 H -0.186 1.186 20 C -0.067 4.067 21 C -0.181 4.181 22 C -0.151 4.151 23 H 0.099 0.901 24 H 0.095 0.905 25 H 0.096 0.904 26 H 0.164 0.836 27 H 0.157 0.843 28 H 0.139 0.861 29 H 0.177 0.823 30 H 0.246 0.754 31 H 0.006 0.994 32 H 0.006 0.994 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -26.099 -4.597 -0.067 26.501 hybrid contribution 1.008 0.800 0.004 1.286 sum -25.092 -3.798 -0.063 25.378 Atomic orbital electron populations 1.20884 0.88982 1.03918 1.03305 1.20466 0.97750 0.92799 0.96533 1.21261 0.93567 0.98885 1.01731 1.21644 0.95032 0.97465 0.97636 1.18910 0.91307 0.94352 1.05662 1.22417 0.92874 0.98201 0.90659 1.22925 0.90789 1.00914 1.08159 1.19136 0.89629 0.83497 0.76325 1.90726 1.72016 1.32960 1.53879 1.46109 1.08411 1.08344 1.72007 1.18579 0.75981 0.97078 0.94165 1.21590 0.93072 0.91781 1.53170 0.89726 1.26107 0.96774 1.03057 0.93747 1.70140 1.03026 1.34004 1.49821 0.85170 0.76837 0.77437 0.79551 1.18576 1.21003 1.18588 1.20342 0.94549 0.94688 0.97156 1.20942 1.00185 0.93716 1.03223 1.21121 0.92717 0.98950 1.02272 0.90059 0.90461 0.90415 0.83625 0.84314 0.86055 0.82334 0.75429 0.99374 0.99381 0.92181 0.90278 0.89346 0.92090 0.83749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.00 71.24 0.71 -0.33 16 2 C -0.08 -1.17 5.89 -19.79 -0.12 -1.28 16 3 C -0.14 -2.27 9.68 22.23 0.22 -2.06 16 4 C -0.10 -2.04 9.41 22.57 0.21 -1.83 16 5 C -0.10 -2.47 5.87 -20.15 -0.12 -2.58 16 6 C -0.02 -0.63 8.89 23.84 0.21 -0.42 16 7 C -0.21 -6.53 9.41 23.62 0.22 -6.31 16 8 C 0.52 22.89 7.74 86.37 0.67 23.56 16 9 O -0.61 -32.36 16.23 -4.36 -0.07 -32.43 16 10 N -0.70 -31.51 5.54 -471.07 -2.61 -34.13 16 11 C 0.26 15.11 5.43 85.63 0.46 15.57 16 12 C -0.56 -31.11 9.28 25.60 0.24 -30.88 16 13 H 0.08 4.23 7.60 -2.91 -0.02 4.21 16 14 C 0.00 0.15 5.46 84.65 0.46 0.62 16 15 N -0.93 -57.16 13.29 21.45 0.28 -56.88 16 16 Si 0.99 42.81 29.54 68.60 2.03 44.84 16 17 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 18 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 19 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 20 C -0.07 -1.41 5.92 -19.56 -0.12 -1.53 16 21 C -0.12 -2.29 9.52 71.24 0.68 -1.61 16 22 C -0.13 -2.24 9.33 22.23 0.21 -2.03 16 23 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 24 H 0.08 0.56 8.08 -2.39 -0.02 0.54 16 25 H 0.08 0.57 8.08 -2.39 -0.02 0.55 16 26 H 0.15 1.70 8.06 -2.91 -0.02 1.67 16 27 H 0.14 2.43 6.17 -2.91 -0.02 2.41 16 28 H 0.12 3.89 5.82 -2.91 -0.02 3.88 16 29 H 0.16 3.75 6.07 -2.91 -0.02 3.74 16 30 H 0.41 15.13 8.30 -92.71 -0.77 14.36 16 31 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 32 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 33 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 34 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.09 1.22 8.09 -2.38 -0.02 1.20 16 36 H 0.06 1.30 6.33 -2.39 -0.02 1.28 16 37 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 Total: -1.00 -74.48 319.29 3.88 -70.60 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.31 Total: 19.10 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: 3.94 Total: -11.11 kcal Atomic # 7 Polarization: -88.68 SS G_CDS: -2.33 Total: -91.00 kcal Atomic # 8 Polarization: -32.36 SS G_CDS: -0.07 Total: -32.43 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -74.48 3.88 -70.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701270665.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.695 kcal (2) G-P(sol) polarization free energy of solvation -74.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds