Wall clock time and date at job start Mon Mar 30 2020 06:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47165 * 2 1 4 4 C 1.53001 * 109.47165 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47546 * 305.00169 * 4 3 2 6 6 N 1.46901 * 109.46895 * 65.00372 * 4 3 2 7 7 C 1.50701 * 109.47197 * 184.99953 * 4 3 2 8 8 N 1.30099 * 124.98262 * 285.04099 * 7 4 3 9 9 C 1.35897 * 109.73260 * 179.97438 * 8 7 4 10 10 C 1.39678 * 133.49590 * 180.02562 * 9 8 7 11 11 C 1.37715 * 119.77468 * 180.27783 * 10 9 8 12 12 C 1.38728 * 120.51298 * 359.39810 * 11 10 9 13 13 C 1.37951 * 120.44005 * 0.62358 * 12 11 10 14 14 C 1.38707 * 119.83496 * 359.68332 * 13 12 11 15 15 N 1.36538 * 124.98046 * 105.00443 * 7 4 3 16 16 C 1.37313 * 126.39760 * 0.06934 * 15 7 4 17 17 H 1.08004 * 119.99743 * 326.49294 * 16 15 7 18 18 C 1.38906 * 120.00142 * 146.49226 * 16 15 7 19 19 N 1.31378 * 120.00008 * 339.40629 * 18 16 15 20 20 Si 1.86803 * 120.00202 * 159.41211 * 18 16 15 21 21 H 1.48498 * 109.47411 * 59.99420 * 20 18 16 22 22 H 1.48493 * 109.47193 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.46863 * 299.99748 * 20 18 16 24 24 H 1.09000 * 109.46856 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46771 * 299.99520 * 1 2 3 26 26 H 1.08994 * 109.47452 * 59.99786 * 1 2 3 27 27 H 1.09010 * 109.47051 * 240.00047 * 2 1 3 28 28 H 1.09001 * 109.47296 * 120.00612 * 2 1 3 29 29 H 1.08997 * 109.47362 * 60.00357 * 3 2 1 30 30 H 1.08997 * 109.47749 * 300.00039 * 3 2 1 31 31 H 1.00898 * 111.00212 * 60.00156 * 6 4 3 32 32 H 1.00904 * 110.99918 * 183.95651 * 6 4 3 33 33 H 1.07997 * 120.11547 * 359.97438 * 10 9 8 34 34 H 1.07998 * 119.74279 * 179.70149 * 11 10 9 35 35 H 1.08008 * 119.77642 * 180.30111 * 12 11 10 36 36 H 1.08007 * 120.08598 * 179.65719 * 13 12 11 37 37 H 0.97001 * 120.00355 * 180.48441 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9330 0.8531 0.8426 6 7 4.0601 0.8570 -1.2543 7 6 4.0723 2.8579 0.1245 8 7 4.0605 3.7398 -0.8318 9 6 4.5843 4.9106 -0.3827 10 6 4.8047 6.1557 -0.9762 11 6 5.3740 7.1721 -0.2420 12 6 5.7193 6.9732 1.0868 13 6 5.5088 5.7495 1.6880 14 6 4.9421 4.7124 0.9619 15 7 4.6058 3.4029 1.2570 16 6 4.7780 2.7694 2.4630 17 1 4.0688 2.0218 2.7864 18 6 5.8642 3.0902 3.2672 19 7 6.9217 3.6673 2.7432 20 14 5.8215 2.7007 5.0937 21 1 5.6537 1.2376 5.2841 22 1 7.0931 3.1388 5.7231 23 1 4.6837 3.4158 5.7257 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.7370 1.3858 -2.0505 32 1 5.0667 0.7864 -1.2515 33 1 4.5340 6.3192 -2.0089 34 1 5.5486 8.1331 -0.7028 35 1 6.1607 7.7802 1.6530 36 1 5.7849 5.5992 2.7213 37 1 7.6831 3.8850 3.3034 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019734820.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:07 Heat of formation + Delta-G solvation = 47.128504 kcal Electronic energy + Delta-G solvation = -19435.529828 eV Core-core repulsion = 16598.241554 eV Total energy + Delta-G solvation = -2837.288275 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.84801 -36.81741 -35.53035 -34.18318 -32.49103 -31.26185 -29.20071 -28.22980 -27.17696 -25.27050 -23.53006 -21.27907 -20.90392 -20.47265 -19.13076 -17.72470 -16.41806 -15.56731 -15.30234 -14.86565 -14.69107 -14.50657 -13.98283 -13.39474 -13.10953 -13.01811 -12.86848 -12.76159 -12.04301 -11.81600 -11.46415 -11.38033 -11.17650 -11.03468 -10.85246 -10.80734 -10.61058 -10.36150 -10.30098 -10.19528 -9.56063 -8.93400 -8.74553 -8.44154 -7.28013 -6.96642 -6.74248 -4.57477 2.08563 2.69906 2.95269 2.98194 3.00750 3.72672 3.93834 4.47355 4.66312 4.98038 5.06351 5.24317 5.38410 5.45240 5.49499 5.78874 5.86727 5.93671 5.99506 6.09427 6.15689 6.21481 6.30313 6.40788 6.56022 6.63691 6.71084 6.74339 6.75558 6.90361 7.02814 7.18008 7.47228 7.56220 7.60034 7.81445 7.91287 8.04111 8.12892 8.56940 9.15790 9.34038 10.13515 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.014185 B = 0.009039 C = 0.006117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.394702 B = 3096.877673 C = 4576.212041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.101 4.101 4 C 0.186 3.814 5 H 0.094 0.906 6 N -0.826 5.826 7 C 0.176 3.824 8 N -0.529 5.529 9 C 0.028 3.972 10 C -0.090 4.090 11 C -0.144 4.144 12 C -0.159 4.159 13 C -0.043 4.043 14 C 0.043 3.957 15 N -0.280 5.280 16 C -0.362 4.362 17 H 0.109 0.891 18 C 0.056 3.944 19 N -0.818 5.818 20 Si 0.926 3.074 21 H -0.265 1.265 22 H -0.277 1.277 23 H -0.265 1.265 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.345 0.655 32 H 0.340 0.660 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.115 0.885 37 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.655 -1.915 -1.006 5.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.140 4.140 4 C 0.072 3.928 5 H 0.112 0.888 6 N -0.353 5.353 7 C -0.088 4.088 8 N -0.253 5.253 9 C -0.096 4.096 10 C -0.110 4.110 11 C -0.165 4.165 12 C -0.180 4.180 13 C -0.063 4.063 14 C -0.072 4.072 15 N 0.050 4.950 16 C -0.490 4.490 17 H 0.127 0.873 18 C -0.158 4.158 19 N -0.447 5.447 20 Si 0.750 3.250 21 H -0.189 1.189 22 H -0.202 1.202 23 H -0.189 1.189 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.158 0.842 32 H 0.151 0.849 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.133 0.867 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.143 -2.784 -1.400 6.013 hybrid contribution 1.169 1.054 1.660 2.288 sum -3.974 -1.730 0.260 4.342 Atomic orbital electron populations 1.21788 0.96745 1.00900 1.01458 1.21432 0.94552 0.96764 1.02544 1.21540 0.93401 0.96837 1.02189 1.19725 0.94449 0.84819 0.93844 0.88799 1.59231 1.16269 1.55815 1.03981 1.24452 1.03932 0.97750 0.82665 1.70021 1.25979 1.00027 1.29248 1.18873 1.04467 0.93966 0.92272 1.19860 1.01899 0.90690 0.98565 1.20494 1.03355 0.97953 0.94676 1.20574 1.05402 0.96679 0.95302 1.20044 0.96413 0.90280 0.99565 1.18707 1.06173 0.86218 0.96130 1.41189 1.38919 1.06169 1.08741 1.19599 1.11118 1.24743 0.93530 0.87349 1.25564 0.93470 0.95406 1.01328 1.70049 1.03072 1.34513 1.37034 0.86002 0.78481 0.79754 0.80764 1.18937 1.20158 1.18950 0.93231 0.93171 0.93024 0.90823 0.92473 0.92067 0.91647 0.84205 0.84880 0.87493 0.87454 0.87502 0.86744 0.90734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.91 37.16 0.37 -1.45 16 2 C -0.12 -1.60 5.82 -26.73 -0.16 -1.75 16 3 C -0.10 -1.68 4.84 -26.73 -0.13 -1.81 16 4 C 0.19 3.52 3.09 -68.86 -0.21 3.31 16 5 H 0.09 1.85 7.27 -51.93 -0.38 1.47 16 6 N -0.83 -13.91 8.67 -5.65 -0.05 -13.96 16 7 C 0.18 4.11 6.67 -154.37 -1.03 3.08 16 8 N -0.53 -12.83 11.06 -8.10 -0.09 -12.92 16 9 C 0.03 0.71 7.22 -84.66 -0.61 0.10 16 10 C -0.09 -1.97 10.10 -39.24 -0.40 -2.36 16 11 C -0.14 -2.87 10.02 -39.59 -0.40 -3.26 16 12 C -0.16 -3.32 10.03 -39.51 -0.40 -3.72 16 13 C -0.04 -1.04 8.57 -39.51 -0.34 -1.38 16 14 C 0.04 1.13 6.16 -83.86 -0.52 0.62 16 15 N -0.28 -7.20 2.86 -56.64 -0.16 -7.36 16 16 C -0.36 -9.05 9.22 -14.85 -0.14 -9.18 16 17 H 0.11 2.54 7.64 -52.48 -0.40 2.14 16 18 C 0.06 1.35 4.52 -17.50 -0.08 1.27 16 19 N -0.82 -20.92 10.62 55.49 0.59 -20.34 16 20 Si 0.93 18.33 29.60 -169.99 -5.03 13.29 16 21 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 22 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 23 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 1.03 7.75 -51.92 -0.40 0.62 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.35 5.82 8.81 -39.29 -0.35 5.47 16 32 H 0.34 5.83 9.06 -39.29 -0.36 5.47 16 33 H 0.11 2.08 8.06 -52.49 -0.42 1.66 16 34 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 35 H 0.11 1.91 8.06 -52.48 -0.42 1.49 16 36 H 0.11 2.82 6.25 -52.48 -0.33 2.50 16 37 H 0.28 6.71 8.31 -40.82 -0.34 6.37 16 LS Contribution 308.41 15.07 4.65 4.65 Total: -1.00 -27.77 308.41 -9.28 -37.05 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: -5.15 Total: 16.14 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -4.03 Total: -16.55 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: 0.29 Total: -54.58 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.29 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.77 -9.28 -37.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019734820.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.179 kcal (2) G-P(sol) polarization free energy of solvation -27.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds