Wall clock time and date at job start Mon Mar 30 2020 06:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47128 * 2 1 4 4 C 1.53003 * 109.47128 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.46573 * 55.00723 * 4 3 2 6 6 N 1.46900 * 109.47496 * 295.00799 * 4 3 2 7 7 C 1.50695 * 109.47224 * 175.00451 * 4 3 2 8 8 N 1.30090 * 124.98142 * 75.02821 * 7 4 3 9 9 C 1.35903 * 109.73749 * 180.02562 * 8 7 4 10 10 C 1.39678 * 133.50564 * 180.02562 * 9 8 7 11 11 C 1.37710 * 119.77612 * 180.02562 * 10 9 8 12 12 C 1.38723 * 120.52122 * 359.97438 * 11 10 9 13 13 C 1.37959 * 120.43813 * 0.02940 * 12 11 10 14 14 C 1.38711 * 119.82864 * 359.95238 * 13 12 11 15 15 N 1.36540 * 124.98017 * 254.72471 * 7 4 3 16 16 C 1.37313 * 126.39984 * 359.97438 * 15 7 4 17 17 H 1.08003 * 119.99668 * 320.33093 * 16 15 7 18 18 C 1.38910 * 120.00256 * 140.32807 * 16 15 7 19 19 N 1.31383 * 119.99902 * 156.35070 * 18 16 15 20 20 Si 1.86805 * 119.99829 * 336.34936 * 18 16 15 21 21 H 1.48501 * 109.46845 * 95.40740 * 20 18 16 22 22 H 1.48501 * 109.46904 * 215.40436 * 20 18 16 23 23 H 1.48500 * 109.47039 * 335.40206 * 20 18 16 24 24 H 1.08998 * 109.47163 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46613 * 299.99317 * 1 2 3 26 26 H 1.08995 * 109.47110 * 59.99342 * 1 2 3 27 27 H 1.09000 * 109.46613 * 240.00683 * 2 1 3 28 28 H 1.08993 * 109.47520 * 120.00981 * 2 1 3 29 29 H 1.09000 * 109.46816 * 60.00807 * 3 2 1 30 30 H 1.08995 * 109.47662 * 300.00319 * 3 2 1 31 31 H 1.00902 * 111.00083 * 176.04408 * 6 4 3 32 32 H 1.00904 * 110.99313 * 299.99996 * 6 4 3 33 33 H 1.08002 * 120.10887 * 0.02562 * 10 9 8 34 34 H 1.08002 * 119.73978 * 180.02562 * 11 10 9 35 35 H 1.07998 * 119.78551 * 180.02562 * 12 11 10 36 36 H 1.07995 * 120.08888 * 179.97438 * 13 12 11 37 37 H 0.97002 * 119.99496 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8530 -0.8411 6 7 4.0593 0.8572 1.2561 7 6 4.0724 2.8578 -0.1231 8 7 4.0610 3.7396 0.8334 9 6 4.5848 4.9105 0.3844 10 6 4.8063 6.1552 0.9782 11 6 5.3696 7.1736 0.2421 12 6 5.7195 6.9733 -1.0853 13 6 5.5074 5.7501 -1.6870 14 6 4.9415 4.7127 -0.9606 15 7 4.6117 3.4010 -1.2538 16 6 4.7898 2.7657 -2.4580 17 1 5.1183 1.7372 -2.4826 18 6 4.5473 3.4459 -3.6447 19 7 5.1283 3.0552 -4.7563 20 14 3.3950 4.9162 -3.6598 21 1 4.1859 6.1662 -3.5283 22 1 2.6400 4.9402 -4.9383 23 1 2.4432 4.8108 -2.5248 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5137 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8898 29 1 1.6768 1.9562 0.8901 30 1 1.6767 1.9564 -0.8899 31 1 5.0658 0.7866 1.2540 32 1 3.7354 1.3862 2.0519 33 1 4.5368 6.3182 2.0113 34 1 5.5409 8.1357 0.7020 35 1 6.1608 7.7802 -1.6514 36 1 5.7816 5.6005 -2.7208 37 1 4.9592 3.5304 -5.5849 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019734821.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:10 Heat of formation + Delta-G solvation = 54.103327 kcal Electronic energy + Delta-G solvation = -19573.793323 eV Core-core repulsion = 16736.807499 eV Total energy + Delta-G solvation = -2836.985824 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.21654 -37.04476 -35.70988 -34.15388 -32.56717 -31.89688 -29.51963 -28.47526 -27.29975 -25.28165 -23.69131 -21.52779 -21.17554 -20.48121 -19.14016 -18.13422 -16.63674 -15.86840 -15.51748 -14.97132 -14.72759 -14.49459 -14.18185 -13.49070 -13.37745 -13.22968 -12.96461 -12.88604 -12.71476 -11.81749 -11.58645 -11.44310 -11.26466 -11.13413 -11.05851 -10.63054 -10.46266 -10.40074 -10.27032 -10.16935 -9.93413 -9.08431 -8.86472 -8.56340 -7.49278 -7.25443 -6.99428 -4.65357 1.75437 2.37923 2.92319 3.05176 3.16387 3.64527 3.84080 4.07446 4.52221 4.71747 4.83197 5.15203 5.32307 5.39272 5.46670 5.57797 5.65160 5.77283 5.86876 5.98350 6.08757 6.17737 6.23471 6.25964 6.34652 6.40260 6.40948 6.53824 6.69036 6.74529 6.85684 7.12967 7.22207 7.38006 7.46541 7.52407 7.74280 7.85462 7.88425 8.49293 8.91884 9.03578 10.06491 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.016881 B = 0.009090 C = 0.006921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.227395 B = 3079.492834 C = 4044.689276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.100 4.100 4 C 0.184 3.816 5 H 0.099 0.901 6 N -0.826 5.826 7 C 0.189 3.811 8 N -0.522 5.522 9 C 0.037 3.963 10 C -0.080 4.080 11 C -0.142 4.142 12 C -0.141 4.141 13 C -0.088 4.088 14 C 0.008 3.992 15 N -0.297 5.297 16 C -0.361 4.361 17 H 0.121 0.879 18 C 0.088 3.912 19 N -0.822 5.822 20 Si 0.866 3.134 21 H -0.246 1.246 22 H -0.280 1.280 23 H -0.260 1.260 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.339 0.661 32 H 0.346 0.654 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.389 0.446 5.698 6.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C -0.139 4.139 4 C 0.070 3.930 5 H 0.117 0.883 6 N -0.353 5.353 7 C -0.075 4.075 8 N -0.244 5.244 9 C -0.088 4.088 10 C -0.100 4.100 11 C -0.163 4.163 12 C -0.162 4.162 13 C -0.109 4.109 14 C -0.107 4.107 15 N 0.031 4.969 16 C -0.489 4.489 17 H 0.139 0.861 18 C -0.127 4.127 19 N -0.450 5.450 20 Si 0.690 3.310 21 H -0.170 1.170 22 H -0.206 1.206 23 H -0.183 1.183 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.150 0.850 32 H 0.159 0.841 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.048 -0.513 5.886 7.162 hybrid contribution 0.343 1.850 -1.141 2.201 sum -3.705 1.337 4.745 6.167 Atomic orbital electron populations 1.21788 0.96715 1.00951 1.01467 1.21422 0.94617 0.96590 1.02607 1.21512 0.92936 0.97103 1.02306 1.19803 0.95023 0.84321 0.93827 0.88335 1.59217 1.16100 1.56004 1.04014 1.24655 0.99673 0.98652 0.84533 1.70084 1.24921 0.99539 1.29873 1.18881 1.04609 0.93984 0.91310 1.19986 1.00720 0.90421 0.98890 1.20589 1.02955 0.98258 0.94506 1.20577 1.04075 0.96174 0.95338 1.20106 0.99890 0.91607 0.99252 1.18994 1.06917 0.88495 0.96266 1.41502 1.38015 1.07108 1.10244 1.19211 1.49540 1.00331 0.79788 0.86146 1.25346 0.94844 0.97887 0.94618 1.69765 1.34766 1.39906 1.00609 0.87063 0.82215 0.82971 0.78736 1.17005 1.20597 1.18335 0.93165 0.93068 0.93114 0.92269 0.90844 0.91718 0.91755 0.84994 0.84081 0.86801 0.86738 0.86730 0.86459 0.90327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 37.16 0.37 -1.51 16 2 C -0.11 -1.62 5.82 -26.73 -0.16 -1.77 16 3 C -0.10 -1.68 4.84 -26.73 -0.13 -1.81 16 4 C 0.18 3.39 3.09 -68.87 -0.21 3.18 16 5 H 0.10 1.90 7.14 -51.93 -0.37 1.53 16 6 N -0.83 -13.01 8.67 -5.65 -0.05 -13.06 16 7 C 0.19 4.21 6.67 -154.37 -1.03 3.18 16 8 N -0.52 -11.87 11.05 -8.10 -0.09 -11.96 16 9 C 0.04 0.85 7.23 -84.66 -0.61 0.24 16 10 C -0.08 -1.59 10.10 -39.24 -0.40 -1.99 16 11 C -0.14 -2.55 10.01 -39.60 -0.40 -2.95 16 12 C -0.14 -2.71 10.03 -39.50 -0.40 -3.11 16 13 C -0.09 -2.00 6.92 -39.51 -0.27 -2.28 16 14 C 0.01 0.19 5.28 -83.86 -0.44 -0.25 16 15 N -0.30 -7.35 2.44 -56.64 -0.14 -7.49 16 16 C -0.36 -9.32 9.68 -14.85 -0.14 -9.46 16 17 H 0.12 3.18 7.60 -52.48 -0.40 2.78 16 18 C 0.09 2.25 4.91 -17.49 -0.09 2.16 16 19 N -0.82 -21.39 13.95 55.49 0.77 -20.62 16 20 Si 0.87 20.34 24.49 -169.99 -4.16 16.17 16 21 H -0.25 -5.52 5.50 56.52 0.31 -5.21 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 23 H -0.26 -6.55 7.11 56.52 0.40 -6.15 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 1.01 7.75 -51.93 -0.40 0.61 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.34 5.23 9.06 -39.29 -0.36 4.87 16 32 H 0.35 5.42 8.81 -39.29 -0.35 5.08 16 33 H 0.11 1.98 8.06 -52.49 -0.42 1.55 16 34 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.11 1.85 8.06 -52.49 -0.42 1.42 16 36 H 0.12 2.72 5.77 -52.49 -0.30 2.42 16 37 H 0.29 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 302.28 15.07 4.56 4.56 Total: -1.00 -27.47 302.28 -8.22 -35.70 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -5.21 Total: 13.06 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -3.91 Total: -16.36 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: 0.50 Total: -53.13 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.16 Total: 16.17 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.47 -8.22 -35.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019734821.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.800 kcal (2) G-P(sol) polarization free energy of solvation -27.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds