Wall clock time and date at job start Mon Mar 30 2020 06:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47128 * 2 1 4 4 C 1.53003 * 109.47128 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.46573 * 55.00723 * 4 3 2 6 6 N 1.46900 * 109.47496 * 295.00799 * 4 3 2 7 7 C 1.50695 * 109.47224 * 175.00451 * 4 3 2 8 8 N 1.30090 * 124.98142 * 75.02821 * 7 4 3 9 9 C 1.35903 * 109.73749 * 180.02562 * 8 7 4 10 10 C 1.39678 * 133.50564 * 180.02562 * 9 8 7 11 11 C 1.37710 * 119.77612 * 180.02562 * 10 9 8 12 12 C 1.38723 * 120.52122 * 359.97438 * 11 10 9 13 13 C 1.37959 * 120.43813 * 0.02940 * 12 11 10 14 14 C 1.38711 * 119.82864 * 359.95238 * 13 12 11 15 15 N 1.36540 * 124.98017 * 254.72471 * 7 4 3 16 16 C 1.37313 * 126.39984 * 359.97438 * 15 7 4 17 17 H 1.08003 * 119.99668 * 320.33093 * 16 15 7 18 18 C 1.38910 * 120.00256 * 140.32807 * 16 15 7 19 19 N 1.31383 * 119.99902 * 156.35070 * 18 16 15 20 20 Si 1.86805 * 119.99829 * 336.34936 * 18 16 15 21 21 H 1.48501 * 109.46845 * 95.40740 * 20 18 16 22 22 H 1.48501 * 109.46904 * 215.40436 * 20 18 16 23 23 H 1.48500 * 109.47039 * 335.40206 * 20 18 16 24 24 H 1.08998 * 109.47163 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46613 * 299.99317 * 1 2 3 26 26 H 1.08995 * 109.47110 * 59.99342 * 1 2 3 27 27 H 1.09000 * 109.46613 * 240.00683 * 2 1 3 28 28 H 1.08993 * 109.47520 * 120.00981 * 2 1 3 29 29 H 1.09000 * 109.46816 * 60.00807 * 3 2 1 30 30 H 1.08995 * 109.47662 * 300.00319 * 3 2 1 31 31 H 1.00902 * 111.00083 * 176.04408 * 6 4 3 32 32 H 1.00904 * 110.99313 * 299.99996 * 6 4 3 33 33 H 1.08002 * 120.10887 * 0.02562 * 10 9 8 34 34 H 1.08002 * 119.73978 * 180.02562 * 11 10 9 35 35 H 1.07998 * 119.78551 * 180.02562 * 12 11 10 36 36 H 1.07995 * 120.08888 * 179.97438 * 13 12 11 37 37 H 0.97002 * 119.99496 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8530 -0.8411 6 7 4.0593 0.8572 1.2561 7 6 4.0724 2.8578 -0.1231 8 7 4.0610 3.7396 0.8334 9 6 4.5848 4.9105 0.3844 10 6 4.8063 6.1552 0.9782 11 6 5.3696 7.1736 0.2421 12 6 5.7195 6.9733 -1.0853 13 6 5.5074 5.7501 -1.6870 14 6 4.9415 4.7127 -0.9606 15 7 4.6117 3.4010 -1.2538 16 6 4.7898 2.7657 -2.4580 17 1 5.1183 1.7372 -2.4826 18 6 4.5473 3.4459 -3.6447 19 7 5.1283 3.0552 -4.7563 20 14 3.3950 4.9162 -3.6598 21 1 4.1859 6.1662 -3.5283 22 1 2.6400 4.9402 -4.9383 23 1 2.4432 4.8108 -2.5248 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5137 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8898 29 1 1.6768 1.9562 0.8901 30 1 1.6767 1.9564 -0.8899 31 1 5.0658 0.7866 1.2540 32 1 3.7354 1.3862 2.0519 33 1 4.5368 6.3182 2.0113 34 1 5.5409 8.1357 0.7020 35 1 6.1608 7.7802 -1.6514 36 1 5.7816 5.6005 -2.7208 37 1 4.9592 3.5304 -5.5849 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019734821.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:09 Heat of formation + Delta-G solvation = 37.050476 kcal Electronic energy + Delta-G solvation = -19574.532790 eV Core-core repulsion = 16736.807499 eV Total energy + Delta-G solvation = -2837.725291 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.93371 -38.57158 -37.18112 -35.97659 -33.88893 -33.67504 -31.14746 -30.03416 -28.63937 -27.16681 -25.11716 -23.17902 -22.67769 -21.88965 -20.84693 -19.92621 -18.23832 -17.68333 -16.92495 -16.47165 -16.38315 -16.18831 -15.67357 -15.04234 -14.96592 -14.84116 -14.55105 -14.44090 -14.08020 -13.38299 -13.12589 -13.07172 -12.82580 -12.60019 -12.46277 -12.26824 -11.95899 -11.91438 -11.84508 -11.67367 -11.46611 -10.86633 -10.70152 -9.97015 -9.18485 -8.94414 -8.91055 -6.62147 0.11825 0.75758 1.06660 1.14397 1.25005 1.89608 1.94771 2.34086 2.66189 3.05045 3.27458 3.71885 3.84254 4.02918 4.13675 4.22781 4.27216 4.39966 4.47787 4.60289 4.67383 4.72476 4.77301 4.89384 4.95315 5.04218 5.10374 5.19101 5.25982 5.42801 5.45963 5.55697 5.63089 5.66558 5.84013 5.93174 6.03834 6.18405 6.50323 6.57424 7.10957 7.23416 8.16828 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.016881 B = 0.009090 C = 0.006921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.227395 B = 3079.492834 C = 4044.689276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.107 4.107 3 C -0.092 4.092 4 C 0.187 3.813 5 H 0.084 0.916 6 N -0.807 5.807 7 C 0.186 3.814 8 N -0.526 5.526 9 C 0.008 3.992 10 C -0.085 4.085 11 C -0.127 4.127 12 C -0.124 4.124 13 C -0.125 4.125 14 C -0.019 4.019 15 N -0.321 5.321 16 C -0.372 4.372 17 H 0.099 0.901 18 C 0.063 3.937 19 N -0.854 5.854 20 Si 0.911 3.089 21 H -0.228 1.228 22 H -0.269 1.269 23 H -0.289 1.289 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.044 0.956 27 H 0.054 0.946 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.040 0.960 31 H 0.342 0.658 32 H 0.350 0.650 33 H 0.141 0.859 34 H 0.166 0.834 35 H 0.152 0.848 36 H 0.103 0.897 37 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.728 2.304 7.252 8.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.145 4.145 3 C -0.131 4.131 4 C 0.073 3.927 5 H 0.102 0.898 6 N -0.335 5.335 7 C -0.078 4.078 8 N -0.249 5.249 9 C -0.115 4.115 10 C -0.104 4.104 11 C -0.147 4.147 12 C -0.144 4.144 13 C -0.146 4.146 14 C -0.132 4.132 15 N 0.005 4.995 16 C -0.500 4.500 17 H 0.117 0.883 18 C -0.149 4.149 19 N -0.484 5.484 20 Si 0.735 3.265 21 H -0.152 1.152 22 H -0.194 1.194 23 H -0.215 1.215 24 H 0.088 0.912 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.059 0.941 31 H 0.153 0.847 32 H 0.164 0.836 33 H 0.159 0.841 34 H 0.183 0.817 35 H 0.170 0.830 36 H 0.121 0.879 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.371 1.366 7.443 8.739 hybrid contribution 0.514 1.363 -1.452 2.057 sum -3.857 2.729 5.991 7.630 Atomic orbital electron populations 1.21766 0.95070 1.02270 1.01516 1.21370 0.96006 0.94364 1.02746 1.21456 0.91676 0.98912 1.01096 1.19871 0.96007 0.82374 0.94461 0.89757 1.59188 1.16318 1.55038 1.02953 1.25433 0.98759 0.99854 0.83772 1.70097 1.25214 0.99778 1.29774 1.19505 1.05249 0.95369 0.91366 1.20461 1.00222 0.89363 1.00399 1.21150 1.00275 0.99638 0.93650 1.21128 1.01594 0.95489 0.96159 1.20269 1.02211 0.92984 0.99119 1.19484 1.07729 0.88609 0.97409 1.41569 1.39840 1.07788 1.10286 1.19037 1.50256 0.99814 0.80871 0.88320 1.25734 0.95393 0.99466 0.94301 1.69785 1.36102 1.41375 1.01178 0.86415 0.80391 0.82036 0.77681 1.15189 1.19423 1.21528 0.91208 0.92427 0.93692 0.92704 0.90055 0.91650 0.94105 0.84660 0.83628 0.84128 0.81692 0.83031 0.87899 0.89617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 9.91 71.98 0.71 -2.77 16 2 C -0.11 -2.96 5.82 30.59 0.18 -2.78 16 3 C -0.09 -3.16 4.84 30.59 0.15 -3.02 16 4 C 0.19 7.08 3.09 44.17 0.14 7.21 16 5 H 0.08 3.43 7.14 -2.38 -0.02 3.41 16 6 N -0.81 -25.24 8.67 -171.80 -1.49 -26.73 16 7 C 0.19 8.53 6.67 137.76 0.92 9.45 16 8 N -0.53 -23.90 11.05 -179.55 -1.98 -25.88 16 9 C 0.01 0.37 7.23 39.42 0.28 0.66 16 10 C -0.08 -3.09 10.10 22.49 0.23 -2.87 16 11 C -0.13 -3.94 10.01 22.26 0.22 -3.72 16 12 C -0.12 -4.31 10.03 22.32 0.22 -4.08 16 13 C -0.13 -5.57 6.92 22.32 0.15 -5.41 16 14 C -0.02 -0.94 5.28 38.78 0.20 -0.73 16 15 N -0.32 -16.42 2.44 -333.12 -0.81 -17.24 16 16 C -0.37 -20.15 9.68 84.00 0.81 -19.34 16 17 H 0.10 5.58 7.60 -2.91 -0.02 5.56 16 18 C 0.06 3.33 4.91 84.92 0.42 3.75 16 19 N -0.85 -45.81 13.95 21.65 0.30 -45.51 16 20 Si 0.91 42.82 24.49 68.60 1.68 44.50 16 21 H -0.23 -9.97 5.50 99.48 0.55 -9.42 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 23 H -0.29 -14.92 7.11 99.48 0.71 -14.22 16 24 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.08 2.13 7.75 -2.39 -0.02 2.11 16 29 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.34 10.52 9.06 -89.69 -0.81 9.71 16 32 H 0.35 10.69 8.81 -89.69 -0.79 9.90 16 33 H 0.14 4.32 8.06 -2.91 -0.02 4.29 16 34 H 0.17 3.53 8.06 -2.91 -0.02 3.51 16 35 H 0.15 4.12 8.06 -2.91 -0.02 4.09 16 36 H 0.10 4.79 5.77 -2.91 -0.02 4.77 16 37 H 0.29 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -61.14 302.28 1.66 -59.47 By element: Atomic # 1 Polarization: 35.73 SS G_CDS: -0.67 Total: 35.05 kcal Atomic # 6 Polarization: -28.31 SS G_CDS: 4.64 Total: -23.67 kcal Atomic # 7 Polarization: -111.37 SS G_CDS: -3.99 Total: -115.36 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 1.68 Total: 44.50 kcal Total: -61.14 1.66 -59.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019734821.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.524 kcal (2) G-P(sol) polarization free energy of solvation -61.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds