Wall clock time and date at job start Mon Mar 30 2020 06:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53004 * 109.47192 * 100.47064 * 3 2 1 5 5 C 1.52993 * 109.46988 * 179.97438 * 4 3 2 6 6 N 1.46907 * 109.46947 * 180.02562 * 5 4 3 7 7 C 1.46902 * 110.99975 * 66.04832 * 6 5 4 8 8 C 1.50694 * 109.46800 * 193.95393 * 7 6 5 9 9 H 1.07993 * 120.00672 * 0.02562 * 8 7 6 10 10 C 1.37883 * 119.99566 * 179.97438 * 8 7 6 11 11 N 1.31509 * 120.00271 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 119.99874 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47234 * 60.00200 * 12 10 8 14 14 H 1.48500 * 109.47213 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47050 * 299.99900 * 12 10 8 16 16 C 1.46904 * 111.00099 * 190.00431 * 6 5 4 17 17 C 1.50695 * 109.47190 * 170.00111 * 16 6 5 18 18 C 1.38678 * 120.41675 * 270.25239 * 17 16 6 19 19 C 1.38627 * 118.41930 * 180.24221 * 18 17 16 20 20 C 1.38232 * 119.16085 * 359.75178 * 19 18 17 21 21 N 1.31857 * 120.76541 * 359.97438 * 20 19 18 22 22 C 1.31889 * 121.72235 * 0.02562 * 21 20 19 23 23 H 1.09000 * 109.47260 * 340.47585 * 3 2 1 24 24 H 1.08999 * 109.46967 * 220.47181 * 3 2 1 25 25 H 1.09000 * 109.46592 * 60.00112 * 4 3 2 26 26 H 1.08994 * 109.47142 * 300.00650 * 4 3 2 27 27 H 1.09000 * 109.47131 * 60.00725 * 5 4 3 28 28 H 1.08994 * 109.47941 * 300.00444 * 5 4 3 29 29 H 1.09000 * 109.46805 * 313.95310 * 7 6 5 30 30 H 1.08999 * 109.46850 * 73.95561 * 7 6 5 31 31 H 0.97005 * 120.00296 * 179.97438 * 11 10 8 32 32 H 1.09001 * 109.46737 * 49.99930 * 16 6 5 33 33 H 1.08996 * 109.46745 * 289.99849 * 16 6 5 34 34 H 1.07994 * 120.78944 * 359.96926 * 18 17 16 35 35 H 1.07997 * 120.42083 * 179.72800 * 19 18 17 36 36 H 1.07999 * 119.61954 * 180.02562 * 20 19 18 37 37 H 1.08002 * 119.61237 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1179 0.2630 -1.4185 5 6 4.6478 0.2643 -1.4183 6 7 5.1374 0.5169 -2.7802 7 6 4.7868 1.8731 -3.2226 8 6 4.9904 1.9840 -4.7116 9 1 5.3443 1.1322 -5.2733 10 6 4.7237 3.1728 -5.3572 11 7 4.2922 4.2100 -4.6734 12 14 4.9754 3.3102 -7.2031 13 1 4.1082 2.3236 -7.8957 14 1 4.6211 4.6812 -7.6503 15 1 6.3974 3.0353 -7.5306 16 6 6.5864 0.2923 -2.8689 17 6 7.0114 0.3189 -4.3144 18 6 7.0170 -0.8464 -5.0662 19 6 7.4203 -0.7752 -6.3906 20 6 7.7959 0.4471 -6.9155 21 7 7.7729 1.5361 -6.1724 22 6 7.3949 1.5057 -4.9091 23 1 2.9717 -0.9677 0.3434 24 1 2.9709 0.7826 0.6670 25 1 2.7541 1.2314 -1.7620 26 1 2.7548 -0.5188 -2.0855 27 1 5.0119 -0.7039 -1.0747 28 1 5.0105 1.0464 -0.7514 29 1 3.7429 2.0751 -2.9826 30 1 5.4234 2.5971 -2.7139 31 1 4.1050 5.0465 -5.1275 32 1 6.8308 -0.6778 -2.4361 33 1 7.1097 1.0764 -2.3218 34 1 6.7185 -1.7877 -4.6290 35 1 7.4413 -1.6636 -7.0043 36 1 8.1110 0.5112 -7.9465 37 1 7.3895 2.4184 -4.3317 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019814428.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:18 Heat of formation + Delta-G solvation = 71.465157 kcal Electronic energy + Delta-G solvation = -19133.746795 eV Core-core repulsion = 16297.513837 eV Total energy + Delta-G solvation = -2836.232958 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.60629 -37.44598 -36.43778 -33.63339 -32.67679 -31.50252 -30.63354 -27.73092 -26.79939 -24.08862 -22.68524 -22.62038 -20.96470 -19.88735 -17.47385 -16.66157 -16.29923 -15.66213 -15.38944 -14.87166 -14.65310 -14.41896 -13.70171 -13.60421 -13.17709 -12.76220 -12.73717 -12.64214 -12.31432 -12.20231 -11.91443 -11.56628 -11.40498 -11.17385 -11.11940 -10.72076 -10.63167 -10.48874 -10.20753 -9.82013 -9.43178 -8.88813 -8.63311 -8.38166 -7.72569 -7.42521 -6.12788 -4.05562 1.97427 2.17589 2.84280 2.87071 3.41101 3.42730 3.59453 4.05703 4.43591 4.57427 4.94021 5.11459 5.25251 5.30839 5.36414 5.42790 5.48243 5.59936 5.64077 5.70690 5.78747 5.88080 5.94469 6.05624 6.09919 6.37341 6.44281 6.53890 6.64575 6.87088 7.07751 7.13080 7.20003 7.58581 7.64645 7.72359 7.97311 8.03573 8.40806 8.90984 8.94066 9.51456 10.95380 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.018920 B = 0.006575 C = 0.005352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.590826 B = 4257.552913 C = 5230.716341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.213 3.787 3 C -0.025 4.025 4 C -0.115 4.115 5 C 0.060 3.940 6 N -0.536 5.536 7 C 0.186 3.814 8 C -0.502 4.502 9 H 0.076 0.924 10 C 0.067 3.933 11 N -0.888 5.888 12 Si 0.867 3.133 13 H -0.283 1.283 14 H -0.293 1.293 15 H -0.233 1.233 16 C 0.112 3.888 17 C -0.116 4.116 18 C -0.070 4.070 19 C -0.210 4.210 20 C 0.089 3.911 21 N -0.505 5.505 22 C 0.188 3.812 23 H 0.106 0.894 24 H 0.106 0.894 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.029 0.971 29 H 0.036 0.964 30 H -0.007 1.007 31 H 0.263 0.737 32 H 0.064 0.936 33 H 0.034 0.966 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.135 0.865 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.055 -9.058 5.697 12.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.104 4.104 3 C -0.066 4.066 4 C -0.154 4.154 5 C -0.069 4.069 6 N -0.260 5.260 7 C 0.061 3.939 8 C -0.540 4.540 9 H 0.094 0.906 10 C -0.137 4.137 11 N -0.526 5.526 12 Si 0.693 3.307 13 H -0.209 1.209 14 H -0.219 1.219 15 H -0.156 1.156 16 C -0.016 4.016 17 C -0.118 4.118 18 C -0.096 4.096 19 C -0.231 4.231 20 C -0.067 4.067 21 N -0.215 5.215 22 C 0.031 3.969 23 H 0.124 0.876 24 H 0.124 0.876 25 H 0.099 0.901 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.047 0.953 29 H 0.054 0.946 30 H 0.011 0.989 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.153 0.847 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.331 -8.404 5.002 10.696 hybrid contribution 0.238 0.030 -0.243 0.341 sum 4.569 -8.374 4.759 10.660 Atomic orbital electron populations 1.81192 1.13298 1.09259 1.08946 1.29318 0.95450 0.92830 0.92846 1.19335 0.81292 1.05053 1.00902 1.21580 0.96194 1.04439 0.93154 1.21942 0.93985 0.99851 0.91124 1.62180 1.11302 1.32244 1.20304 1.19890 0.96614 0.81555 0.95858 1.21517 1.42624 0.97310 0.92561 0.90611 1.24918 0.94621 0.95728 0.98420 1.69945 1.44080 1.02334 1.36231 0.86967 0.81595 0.76640 0.85482 1.20894 1.21927 1.15582 1.20712 0.89143 0.99563 0.92168 1.20412 0.99950 0.94324 0.97152 1.21105 0.96966 0.97888 0.93671 1.21726 1.05939 0.98903 0.96504 1.22433 0.96720 0.88577 0.98974 1.67763 1.17088 1.30239 1.06424 1.22330 0.87837 0.96392 0.90380 0.87638 0.87599 0.90138 0.90463 0.91692 0.95323 0.94625 0.98887 0.92742 0.91722 0.94801 0.86356 0.86583 0.84725 0.83497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.19 18.54 42.15 0.78 -6.41 16 2 C 0.21 2.73 15.43 -20.76 -0.32 2.41 16 3 C -0.03 -0.23 5.70 -29.52 -0.17 -0.40 16 4 C -0.11 -1.48 5.13 -26.73 -0.14 -1.62 16 5 C 0.06 0.81 4.96 -3.82 -0.02 0.79 16 6 N -0.54 -9.70 4.56 -237.52 -1.08 -10.78 16 7 C 0.19 4.23 4.53 -4.98 -0.02 4.20 16 8 C -0.50 -12.72 5.38 -34.44 -0.19 -12.91 16 9 H 0.08 1.95 4.79 -52.49 -0.25 1.70 16 10 C 0.07 1.80 5.44 -17.82 -0.10 1.71 16 11 N -0.89 -25.05 13.29 55.43 0.74 -24.32 16 12 Si 0.87 21.35 28.83 -169.99 -4.90 16.45 16 13 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 14 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 15 H -0.23 -5.58 5.98 56.52 0.34 -5.24 16 16 C 0.11 1.85 5.14 -4.98 -0.03 1.83 16 17 C -0.12 -2.12 3.48 -104.48 -0.36 -2.48 16 18 C -0.07 -1.18 9.65 -39.28 -0.38 -1.56 16 19 C -0.21 -3.44 10.11 -39.44 -0.40 -3.84 16 20 C 0.09 1.60 11.18 -17.54 -0.20 1.41 16 21 N -0.51 -10.52 8.56 -13.25 -0.11 -10.64 16 22 C 0.19 3.84 6.95 -17.55 -0.12 3.72 16 23 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.08 1.28 6.31 -51.93 -0.33 0.95 16 26 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 27 H 0.06 0.71 7.93 -51.93 -0.41 0.30 16 28 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 29 H 0.04 0.88 5.98 -51.93 -0.31 0.56 16 30 H -0.01 -0.16 7.99 -51.93 -0.41 -0.58 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.06 0.88 7.89 -51.93 -0.41 0.47 16 33 H 0.03 0.55 7.96 -51.93 -0.41 0.14 16 34 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 35 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 36 H 0.14 2.09 8.06 -52.49 -0.42 1.67 16 37 H 0.15 3.19 7.67 -52.49 -0.40 2.79 16 LS Contribution 308.60 15.07 4.65 4.65 Total: -1.00 -30.74 308.60 -7.46 -38.20 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -5.10 Total: -0.39 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -2.43 Total: -6.76 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: 0.32 Total: -52.15 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.90 Total: 16.45 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.74 -7.46 -38.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019814428.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.664 kcal (2) G-P(sol) polarization free energy of solvation -30.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds