Wall clock time and date at job start Mon Mar 30 2020 06:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53004 * 109.47192 * 100.47064 * 3 2 1 5 5 C 1.52993 * 109.46988 * 179.97438 * 4 3 2 6 6 N 1.46907 * 109.46947 * 180.02562 * 5 4 3 7 7 C 1.46902 * 110.99975 * 66.04832 * 6 5 4 8 8 C 1.50694 * 109.46800 * 193.95393 * 7 6 5 9 9 H 1.07993 * 120.00672 * 0.02562 * 8 7 6 10 10 C 1.37883 * 119.99566 * 179.97438 * 8 7 6 11 11 N 1.31509 * 120.00271 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 119.99874 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47234 * 60.00200 * 12 10 8 14 14 H 1.48500 * 109.47213 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47050 * 299.99900 * 12 10 8 16 16 C 1.46904 * 111.00099 * 190.00431 * 6 5 4 17 17 C 1.50695 * 109.47190 * 170.00111 * 16 6 5 18 18 C 1.38678 * 120.41675 * 270.25239 * 17 16 6 19 19 C 1.38627 * 118.41930 * 180.24221 * 18 17 16 20 20 C 1.38232 * 119.16085 * 359.75178 * 19 18 17 21 21 N 1.31857 * 120.76541 * 359.97438 * 20 19 18 22 22 C 1.31889 * 121.72235 * 0.02562 * 21 20 19 23 23 H 1.09000 * 109.47260 * 340.47585 * 3 2 1 24 24 H 1.08999 * 109.46967 * 220.47181 * 3 2 1 25 25 H 1.09000 * 109.46592 * 60.00112 * 4 3 2 26 26 H 1.08994 * 109.47142 * 300.00650 * 4 3 2 27 27 H 1.09000 * 109.47131 * 60.00725 * 5 4 3 28 28 H 1.08994 * 109.47941 * 300.00444 * 5 4 3 29 29 H 1.09000 * 109.46805 * 313.95310 * 7 6 5 30 30 H 1.08999 * 109.46850 * 73.95561 * 7 6 5 31 31 H 0.97005 * 120.00296 * 179.97438 * 11 10 8 32 32 H 1.09001 * 109.46737 * 49.99930 * 16 6 5 33 33 H 1.08996 * 109.46745 * 289.99849 * 16 6 5 34 34 H 1.07994 * 120.78944 * 359.96926 * 18 17 16 35 35 H 1.07997 * 120.42083 * 179.72800 * 19 18 17 36 36 H 1.07999 * 119.61954 * 180.02562 * 20 19 18 37 37 H 1.08002 * 119.61237 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1179 0.2630 -1.4185 5 6 4.6478 0.2643 -1.4183 6 7 5.1374 0.5169 -2.7802 7 6 4.7868 1.8731 -3.2226 8 6 4.9904 1.9840 -4.7116 9 1 5.3443 1.1322 -5.2733 10 6 4.7237 3.1728 -5.3572 11 7 4.2922 4.2100 -4.6734 12 14 4.9754 3.3102 -7.2031 13 1 4.1082 2.3236 -7.8957 14 1 4.6211 4.6812 -7.6503 15 1 6.3974 3.0353 -7.5306 16 6 6.5864 0.2923 -2.8689 17 6 7.0114 0.3189 -4.3144 18 6 7.0170 -0.8464 -5.0662 19 6 7.4203 -0.7752 -6.3906 20 6 7.7959 0.4471 -6.9155 21 7 7.7729 1.5361 -6.1724 22 6 7.3949 1.5057 -4.9091 23 1 2.9717 -0.9677 0.3434 24 1 2.9709 0.7826 0.6670 25 1 2.7541 1.2314 -1.7620 26 1 2.7548 -0.5188 -2.0855 27 1 5.0119 -0.7039 -1.0747 28 1 5.0105 1.0464 -0.7514 29 1 3.7429 2.0751 -2.9826 30 1 5.4234 2.5971 -2.7139 31 1 4.1050 5.0465 -5.1275 32 1 6.8308 -0.6778 -2.4361 33 1 7.1097 1.0764 -2.3218 34 1 6.7185 -1.7877 -4.6290 35 1 7.4413 -1.6636 -7.0043 36 1 8.1110 0.5112 -7.9465 37 1 7.3895 2.4184 -4.3317 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019814428.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:17 Heat of formation + Delta-G solvation = 51.376969 kcal Electronic energy + Delta-G solvation = -19134.617885 eV Core-core repulsion = 16297.513837 eV Total energy + Delta-G solvation = -2837.104047 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.03879 -38.69127 -37.62513 -34.97910 -34.39718 -32.90478 -31.97325 -29.49897 -27.95484 -25.60884 -24.20851 -24.07264 -22.21694 -21.26012 -18.75961 -18.24544 -17.68503 -17.07190 -16.68134 -16.28127 -16.07151 -15.89122 -15.11063 -14.79522 -14.56118 -14.18824 -14.10970 -13.93869 -13.77865 -13.70381 -13.48672 -12.94041 -12.64227 -12.54785 -12.47408 -12.30143 -12.19466 -11.82824 -11.69474 -11.30331 -11.25714 -10.55885 -10.29730 -9.92377 -9.25477 -8.88429 -8.16927 -6.11235 0.57267 0.78395 1.38983 1.42213 1.59482 1.82811 1.88872 2.45732 3.05121 3.19292 3.30759 3.65446 3.90936 4.16531 4.23132 4.25947 4.36988 4.48299 4.49809 4.53712 4.76955 4.80961 4.83853 4.88216 4.96236 5.10937 5.18243 5.27187 5.39475 5.43327 5.48684 5.52432 5.71165 5.78197 6.16011 6.20147 6.45102 6.67226 6.78112 6.96243 7.46303 7.49196 8.91753 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.018920 B = 0.006575 C = 0.005352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.590826 B = 4257.552913 C = 5230.716341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C 0.236 3.764 3 C -0.013 4.013 4 C -0.109 4.109 5 C 0.058 3.942 6 N -0.544 5.544 7 C 0.202 3.798 8 C -0.489 4.489 9 H 0.074 0.926 10 C 0.021 3.979 11 N -0.927 5.927 12 Si 0.908 3.092 13 H -0.289 1.289 14 H -0.302 1.302 15 H -0.225 1.225 16 C 0.112 3.888 17 C -0.123 4.123 18 C -0.070 4.070 19 C -0.194 4.194 20 C 0.067 3.933 21 N -0.533 5.533 22 C 0.164 3.836 23 H 0.151 0.849 24 H 0.132 0.868 25 H 0.039 0.961 26 H 0.067 0.933 27 H 0.109 0.891 28 H 0.035 0.965 29 H 0.013 0.987 30 H -0.033 1.033 31 H 0.257 0.743 32 H 0.107 0.893 33 H 0.029 0.971 34 H 0.152 0.848 35 H 0.155 0.845 36 H 0.157 0.843 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.410 -12.503 6.382 15.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.192 5.192 2 C -0.080 4.080 3 C -0.052 4.052 4 C -0.149 4.149 5 C -0.070 4.070 6 N -0.268 5.268 7 C 0.076 3.924 8 C -0.527 4.527 9 H 0.092 0.908 10 C -0.178 4.178 11 N -0.568 5.568 12 Si 0.735 3.265 13 H -0.215 1.215 14 H -0.229 1.229 15 H -0.148 1.148 16 C -0.016 4.016 17 C -0.125 4.125 18 C -0.096 4.096 19 C -0.214 4.214 20 C -0.089 4.089 21 N -0.244 5.244 22 C 0.007 3.993 23 H 0.169 0.831 24 H 0.150 0.850 25 H 0.058 0.942 26 H 0.086 0.914 27 H 0.127 0.873 28 H 0.053 0.947 29 H 0.031 0.969 30 H -0.015 1.015 31 H 0.066 0.934 32 H 0.125 0.875 33 H 0.047 0.953 34 H 0.170 0.830 35 H 0.172 0.828 36 H 0.174 0.826 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.704 -11.873 5.688 14.348 hybrid contribution -0.031 0.941 -0.488 1.060 sum 5.673 -10.932 5.200 13.369 Atomic orbital electron populations 1.81214 1.15443 1.11680 1.10911 1.30023 0.96108 0.90834 0.91004 1.19524 0.78519 1.08427 0.98774 1.21449 0.96140 1.01867 0.95419 1.22121 0.93901 1.02277 0.88664 1.62064 1.12618 1.28535 1.23570 1.19491 0.94654 0.83944 0.94320 1.21746 1.40558 0.96508 0.93889 0.90767 1.25441 0.95510 0.96098 1.00732 1.70037 1.47142 1.02689 1.36972 0.86341 0.81551 0.75703 0.82945 1.21531 1.22878 1.14767 1.20843 0.87873 1.01604 0.91284 1.20638 0.99437 0.94074 0.98372 1.21552 0.95771 0.98487 0.93755 1.22182 1.03035 0.99465 0.96741 1.22923 0.97275 0.88760 0.99902 1.67643 1.17630 1.32207 1.06894 1.22080 0.90105 0.96560 0.90579 0.83111 0.85034 0.94217 0.91385 0.87266 0.94674 0.96902 1.01527 0.93411 0.87469 0.95283 0.82988 0.82762 0.82568 0.86435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -16.34 18.54 20.01 0.37 -15.96 16 2 C 0.24 5.68 15.43 89.44 1.38 7.06 16 3 C -0.01 -0.18 5.70 28.79 0.16 -0.02 16 4 C -0.11 -2.61 5.13 30.59 0.16 -2.45 16 5 C 0.06 1.37 4.96 86.30 0.43 1.80 16 6 N -0.54 -18.59 4.56 -905.38 -4.13 -22.72 16 7 C 0.20 9.37 4.53 85.55 0.39 9.76 16 8 C -0.49 -25.18 5.38 25.60 0.14 -25.04 16 9 H 0.07 3.80 4.79 -2.91 -0.01 3.79 16 10 C 0.02 1.17 5.44 84.66 0.46 1.63 16 11 N -0.93 -54.73 13.29 21.45 0.28 -54.45 16 12 Si 0.91 45.04 28.83 68.60 1.98 47.02 16 13 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 14 H -0.30 -15.26 7.11 99.48 0.71 -14.55 16 15 H -0.22 -10.73 5.98 99.48 0.59 -10.14 16 16 C 0.11 3.36 5.14 85.55 0.44 3.80 16 17 C -0.12 -4.24 3.48 -19.77 -0.07 -4.31 16 18 C -0.07 -2.05 9.65 22.47 0.22 -1.84 16 19 C -0.19 -5.58 10.11 22.36 0.23 -5.35 16 20 C 0.07 2.26 11.18 84.69 0.95 3.21 16 21 N -0.53 -21.97 8.56 -195.83 -1.68 -23.65 16 22 C 0.16 6.73 6.95 84.67 0.59 7.32 16 23 H 0.15 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.04 1.27 6.31 -2.39 -0.02 1.26 16 26 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.11 1.70 7.93 -2.39 -0.02 1.68 16 28 H 0.03 0.82 8.12 -2.39 -0.02 0.80 16 29 H 0.01 0.66 5.98 -2.39 -0.01 0.65 16 30 H -0.03 -1.68 7.99 -2.39 -0.02 -1.70 16 31 H 0.26 14.82 8.31 -92.70 -0.77 14.05 16 32 H 0.11 2.34 7.89 -2.39 -0.02 2.32 16 33 H 0.03 0.91 7.96 -2.39 -0.02 0.89 16 34 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 35 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 36 H 0.16 4.45 8.06 -2.91 -0.02 4.43 16 37 H 0.12 5.39 7.67 -2.91 -0.02 5.37 16 Total: -1.00 -71.61 308.60 3.24 -68.37 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: 0.95 Total: 5.82 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: 5.46 Total: -4.43 kcal Atomic # 7 Polarization: -111.63 SS G_CDS: -5.15 Total: -116.78 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.98 Total: 47.02 kcal Total: -71.61 3.24 -68.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019814428.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.748 kcal (2) G-P(sol) polarization free energy of solvation -71.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds