Wall clock time and date at job start Mon Mar 30 2020 07:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47091 * 2 1 4 4 N 1.46906 * 109.46618 * 119.99163 * 2 1 3 5 5 C 1.46902 * 111.00062 * 274.99791 * 4 2 1 6 6 C 1.50699 * 109.46821 * 179.97438 * 5 4 2 7 7 H 1.07999 * 120.00212 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99573 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99898 * 180.02562 * 8 6 5 10 10 Si 1.86793 * 120.00213 * 0.02562 * 8 6 5 11 11 H 1.48503 * 109.47014 * 89.99731 * 10 8 6 12 12 H 1.48496 * 109.47211 * 209.99695 * 10 8 6 13 13 H 1.48502 * 109.47411 * 330.00108 * 10 8 6 14 14 C 1.50697 * 109.47429 * 239.98965 * 2 1 3 15 15 N 1.30110 * 124.95422 * 284.97905 * 14 2 1 16 16 C 1.35787 * 109.64483 * 180.02562 * 15 14 2 17 17 C 1.39735 * 133.60090 * 179.97438 * 16 15 14 18 18 C 1.36603 * 119.88474 * 179.72469 * 17 16 15 19 19 C 1.38783 * 120.66827 * 0.28758 * 18 17 16 20 20 C 1.37848 * 120.45026 * 0.02562 * 19 18 17 21 21 C 1.38833 * 119.69197 * 359.97438 * 20 19 18 22 22 N 1.36053 * 124.94625 * 105.68459 * 14 2 1 23 23 C 1.46503 * 126.34878 * 359.34464 * 22 14 2 24 24 H 1.09007 * 109.47063 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47509 * 300.00642 * 1 2 3 26 26 H 1.09004 * 109.47039 * 60.00936 * 1 2 3 27 27 H 1.00907 * 110.99551 * 151.05145 * 4 2 1 28 28 H 1.08994 * 109.47446 * 300.00709 * 5 4 2 29 29 H 1.09000 * 109.46772 * 60.00937 * 5 4 2 30 30 H 0.97005 * 120.00467 * 180.02562 * 9 8 6 31 31 H 1.08002 * 120.06112 * 0.02562 * 17 16 15 32 32 H 1.07994 * 119.66831 * 180.30197 * 18 17 16 33 33 H 1.08003 * 119.77014 * 180.02562 * 19 18 17 34 34 H 1.08002 * 120.15281 * 179.97438 * 20 19 18 35 35 H 1.08999 * 109.46847 * 270.86373 * 23 22 14 36 36 H 1.09003 * 109.46861 * 30.85563 * 23 22 14 37 37 H 1.08995 * 109.47278 * 150.85448 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0195 -0.6924 1.1996 5 6 2.0823 0.2229 2.3470 6 6 2.5871 -0.5214 3.5562 7 1 2.8367 -1.5694 3.4799 8 6 2.7302 0.1356 4.7599 9 7 3.1712 -0.5138 5.8151 10 14 2.2978 1.9480 4.8919 11 1 0.8682 2.0896 5.2680 12 1 3.1481 2.5854 5.9292 13 1 2.5333 2.6097 3.5835 14 6 2.0324 -0.7106 -1.2303 15 7 2.0210 -2.0001 -1.4032 16 6 2.5455 -2.3024 -2.6186 17 6 2.7693 -3.5014 -3.3005 18 6 3.3243 -3.4813 -4.5485 19 6 3.6755 -2.2798 -5.1478 20 6 3.4699 -1.0853 -4.4913 21 6 2.9070 -1.0861 -3.2222 22 7 2.5764 -0.0981 -2.3165 23 6 2.7612 1.3438 -2.4984 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 2.9173 -1.1204 1.0290 28 1 2.7587 1.0465 2.1182 29 1 1.0869 0.6166 2.5525 30 1 3.2715 -0.0518 6.6621 31 1 2.4995 -4.4420 -2.8436 32 1 3.4911 -4.4097 -5.0744 33 1 4.1130 -2.2808 -6.1353 34 1 3.7455 -0.1531 -4.9620 35 1 1.8697 1.7691 -2.9593 36 1 2.9286 1.8138 -1.5293 37 1 3.6229 1.5214 -3.1419 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020199880.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:42 Heat of formation + Delta-G solvation = 78.061729 kcal Electronic energy + Delta-G solvation = -18764.590629 eV Core-core repulsion = 15928.643719 eV Total energy + Delta-G solvation = -2835.946909 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.14074 -37.69886 -35.97208 -34.19929 -32.71989 -30.70556 -30.37384 -28.63705 -27.01405 -26.68792 -23.94440 -22.16410 -21.59672 -20.89929 -19.51156 -17.34109 -17.13950 -16.80426 -15.88768 -15.65072 -14.78494 -14.53303 -14.10730 -14.03648 -13.66741 -13.56164 -13.29046 -12.85287 -12.55683 -12.22222 -12.03339 -11.90823 -11.73673 -11.47674 -11.39131 -11.02624 -10.58787 -10.56478 -10.33918 -9.89356 -9.72581 -9.31240 -8.60858 -8.29091 -8.05025 -7.57133 -6.06695 -4.05087 0.95887 1.51558 2.56099 2.84961 3.26111 3.32986 3.33594 3.91229 4.19935 4.39210 4.41417 4.56116 4.86862 4.93649 4.95020 4.98970 5.16482 5.25204 5.34392 5.40196 5.42122 5.57837 5.61473 5.73807 5.98406 6.09471 6.16402 6.41731 6.47839 6.54810 6.58252 6.67953 6.89422 6.92711 7.12741 7.54067 7.80684 8.06878 8.24709 8.61915 9.03216 9.53957 11.06614 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.032456 B = 0.004525 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.491150 B = 6186.815916 C = 6521.319271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.161 3.839 3 H 0.051 0.949 4 N -0.657 5.657 5 C 0.164 3.836 6 C -0.515 4.515 7 H 0.081 0.919 8 C 0.069 3.931 9 N -0.898 5.898 10 Si 0.877 3.123 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.269 1.269 14 C 0.290 3.710 15 N -0.466 5.466 16 C 0.047 3.953 17 C -0.061 4.061 18 C -0.134 4.134 19 C -0.109 4.109 20 C -0.111 4.111 21 C 0.042 3.958 22 N -0.495 5.495 23 C 0.077 3.923 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.046 0.954 27 H 0.343 0.657 28 H -0.017 1.017 29 H 0.026 0.974 30 H 0.264 0.736 31 H 0.129 0.871 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.117 0.883 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.681 2.942 -22.325 22.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.048 3.952 3 H 0.068 0.932 4 N -0.290 5.290 5 C 0.037 3.963 6 C -0.554 4.554 7 H 0.099 0.901 8 C -0.132 4.132 9 N -0.537 5.537 10 Si 0.704 3.296 11 H -0.200 1.200 12 H -0.212 1.212 13 H -0.194 1.194 14 C 0.024 3.976 15 N -0.184 5.184 16 C -0.072 4.072 17 C -0.081 4.081 18 C -0.155 4.155 19 C -0.128 4.128 20 C -0.132 4.132 21 C -0.067 4.067 22 N -0.185 5.185 23 C -0.065 4.065 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.065 0.935 27 H 0.162 0.838 28 H 0.001 0.999 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.147 0.853 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.135 0.865 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.521 2.261 -21.387 21.560 hybrid contribution 0.944 2.242 -0.591 2.503 sum -0.577 4.503 -21.978 22.442 Atomic orbital electron populations 1.21755 0.92733 1.03520 1.01017 1.20102 0.96732 0.93751 0.84569 0.93169 1.60565 1.34098 1.32819 1.01501 1.20120 0.95797 0.91092 0.89331 1.21020 1.43421 0.98827 0.92091 0.90067 1.24895 0.94813 0.97931 0.95610 1.69897 1.46482 1.36497 1.00828 0.86839 0.78829 0.85926 0.77978 1.20028 1.21196 1.19393 1.23953 0.95188 0.88514 0.89908 1.70546 1.21134 1.11221 1.15461 1.19229 1.02555 0.93042 0.92392 1.20052 0.98259 0.95833 0.93911 1.20597 1.01442 0.98108 0.95317 1.20811 1.00747 0.91598 0.99693 1.19882 1.02671 0.98795 0.91872 1.18904 1.04774 0.89287 0.93780 1.45262 1.51354 1.06879 1.15013 1.21981 1.02974 0.77416 1.04179 0.90824 0.91205 0.93528 0.83781 0.99919 0.95568 0.92603 0.85322 0.85585 0.85616 0.86453 0.90737 0.89250 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 9.40 37.16 0.35 -1.71 16 2 C 0.16 2.75 2.98 -68.86 -0.20 2.55 16 3 H 0.05 0.79 6.34 -51.93 -0.33 0.46 16 4 N -0.66 -14.03 6.27 -109.22 -0.68 -14.71 16 5 C 0.16 3.92 4.31 -4.98 -0.02 3.90 16 6 C -0.52 -14.79 9.87 -34.44 -0.34 -15.13 16 7 H 0.08 2.56 8.06 -52.49 -0.42 2.14 16 8 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 9 N -0.90 -27.66 13.96 55.43 0.77 -26.88 16 10 Si 0.88 21.22 27.47 -169.99 -4.67 16.55 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 14 C 0.29 4.90 6.36 -154.81 -0.98 3.91 16 15 N -0.47 -8.70 11.24 -8.23 -0.09 -8.79 16 16 C 0.05 0.77 7.23 -84.70 -0.61 0.16 16 17 C -0.06 -0.83 10.05 -39.61 -0.40 -1.23 16 18 C -0.13 -1.44 9.96 -39.97 -0.40 -1.84 16 19 C -0.11 -1.10 10.03 -39.52 -0.40 -1.49 16 20 C -0.11 -1.27 10.05 -39.50 -0.40 -1.67 16 21 C 0.04 0.60 6.87 -83.99 -0.58 0.03 16 22 N -0.49 -6.99 3.21 -118.50 -0.38 -7.37 16 23 C 0.08 0.73 10.91 59.85 0.65 1.38 16 24 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 25 H 0.07 1.10 7.45 -51.93 -0.39 0.71 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.34 7.58 8.34 -39.29 -0.33 7.25 16 28 H -0.02 -0.39 7.11 -51.93 -0.37 -0.76 16 29 H 0.03 0.62 6.86 -51.93 -0.36 0.27 16 30 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 31 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 32 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.13 0.89 8.06 -52.48 -0.42 0.46 16 34 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.82 6.89 -51.93 -0.36 0.47 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 310.54 15.07 4.68 4.68 Total: -1.00 -33.29 310.54 -8.90 -42.18 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -5.10 Total: 3.56 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -3.43 Total: -9.22 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: -0.38 Total: -57.75 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.29 -8.90 -42.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199880.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.246 kcal (2) G-P(sol) polarization free energy of solvation -33.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds