Wall clock time and date at job start Mon Mar 30 2020 07:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47091 * 2 1 4 4 N 1.46906 * 109.46618 * 119.99163 * 2 1 3 5 5 C 1.46902 * 111.00062 * 274.99791 * 4 2 1 6 6 C 1.50699 * 109.46821 * 179.97438 * 5 4 2 7 7 H 1.07999 * 120.00212 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99573 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99898 * 180.02562 * 8 6 5 10 10 Si 1.86793 * 120.00213 * 0.02562 * 8 6 5 11 11 H 1.48503 * 109.47014 * 89.99731 * 10 8 6 12 12 H 1.48496 * 109.47211 * 209.99695 * 10 8 6 13 13 H 1.48502 * 109.47411 * 330.00108 * 10 8 6 14 14 C 1.50697 * 109.47429 * 239.98965 * 2 1 3 15 15 N 1.30110 * 124.95422 * 284.97905 * 14 2 1 16 16 C 1.35787 * 109.64483 * 180.02562 * 15 14 2 17 17 C 1.39735 * 133.60090 * 179.97438 * 16 15 14 18 18 C 1.36603 * 119.88474 * 179.72469 * 17 16 15 19 19 C 1.38783 * 120.66827 * 0.28758 * 18 17 16 20 20 C 1.37848 * 120.45026 * 0.02562 * 19 18 17 21 21 C 1.38833 * 119.69197 * 359.97438 * 20 19 18 22 22 N 1.36053 * 124.94625 * 105.68459 * 14 2 1 23 23 C 1.46503 * 126.34878 * 359.34464 * 22 14 2 24 24 H 1.09007 * 109.47063 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47509 * 300.00642 * 1 2 3 26 26 H 1.09004 * 109.47039 * 60.00936 * 1 2 3 27 27 H 1.00907 * 110.99551 * 151.05145 * 4 2 1 28 28 H 1.08994 * 109.47446 * 300.00709 * 5 4 2 29 29 H 1.09000 * 109.46772 * 60.00937 * 5 4 2 30 30 H 0.97005 * 120.00467 * 180.02562 * 9 8 6 31 31 H 1.08002 * 120.06112 * 0.02562 * 17 16 15 32 32 H 1.07994 * 119.66831 * 180.30197 * 18 17 16 33 33 H 1.08003 * 119.77014 * 180.02562 * 19 18 17 34 34 H 1.08002 * 120.15281 * 179.97438 * 20 19 18 35 35 H 1.08999 * 109.46847 * 270.86373 * 23 22 14 36 36 H 1.09003 * 109.46861 * 30.85563 * 23 22 14 37 37 H 1.08995 * 109.47278 * 150.85448 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0195 -0.6924 1.1996 5 6 2.0823 0.2229 2.3470 6 6 2.5871 -0.5214 3.5562 7 1 2.8367 -1.5694 3.4799 8 6 2.7302 0.1356 4.7599 9 7 3.1712 -0.5138 5.8151 10 14 2.2978 1.9480 4.8919 11 1 0.8682 2.0896 5.2680 12 1 3.1481 2.5854 5.9292 13 1 2.5333 2.6097 3.5835 14 6 2.0324 -0.7106 -1.2303 15 7 2.0210 -2.0001 -1.4032 16 6 2.5455 -2.3024 -2.6186 17 6 2.7693 -3.5014 -3.3005 18 6 3.3243 -3.4813 -4.5485 19 6 3.6755 -2.2798 -5.1478 20 6 3.4699 -1.0853 -4.4913 21 6 2.9070 -1.0861 -3.2222 22 7 2.5764 -0.0981 -2.3165 23 6 2.7612 1.3438 -2.4984 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 2.9173 -1.1204 1.0290 28 1 2.7587 1.0465 2.1182 29 1 1.0869 0.6166 2.5525 30 1 3.2715 -0.0518 6.6621 31 1 2.4995 -4.4420 -2.8436 32 1 3.4911 -4.4097 -5.0744 33 1 4.1130 -2.2808 -6.1353 34 1 3.7455 -0.1531 -4.9620 35 1 1.8697 1.7691 -2.9593 36 1 2.9286 1.8138 -1.5293 37 1 3.6229 1.5214 -3.1419 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020199880.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:41 Heat of formation + Delta-G solvation = 54.866562 kcal Electronic energy + Delta-G solvation = -18765.596447 eV Core-core repulsion = 15928.643719 eV Total energy + Delta-G solvation = -2836.952727 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.19084 -38.76531 -37.39817 -35.21660 -34.78399 -32.24123 -31.37969 -29.71397 -28.54461 -27.86106 -25.25504 -23.34716 -22.99051 -22.22349 -20.73920 -18.99198 -18.34257 -17.96552 -17.08663 -16.90919 -16.25758 -16.01515 -15.42575 -15.07768 -14.96954 -14.73521 -14.51755 -14.19222 -13.83438 -13.62151 -13.41373 -13.18535 -12.84972 -12.70976 -12.48642 -12.34981 -12.28839 -12.11248 -11.82331 -11.50823 -11.33552 -10.84936 -10.80522 -9.28650 -9.22425 -9.05054 -8.29394 -6.35396 -0.02108 0.58228 1.36048 1.39147 1.49266 1.59083 1.76211 2.35010 2.93281 3.03917 3.05875 3.28834 3.54717 3.82489 3.96901 4.12125 4.16430 4.25576 4.36232 4.46200 4.51242 4.58827 4.65790 4.68980 4.81591 4.86455 4.92698 5.02082 5.20973 5.26431 5.47362 5.52953 5.58977 5.62202 5.88094 6.00997 6.13911 6.43053 6.57257 6.72381 6.96806 7.28946 8.87902 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.032456 B = 0.004525 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.491150 B = 6186.815916 C = 6521.319271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.163 3.837 3 H 0.073 0.927 4 N -0.673 5.673 5 C 0.178 3.822 6 C -0.532 4.532 7 H 0.029 0.971 8 C 0.006 3.994 9 N -0.950 5.950 10 Si 0.956 3.044 11 H -0.263 1.263 12 H -0.282 1.282 13 H -0.243 1.243 14 C 0.272 3.728 15 N -0.512 5.512 16 C 0.002 3.998 17 C -0.089 4.089 18 C -0.124 4.124 19 C -0.098 4.098 20 C -0.113 4.113 21 C 0.030 3.970 22 N -0.490 5.490 23 C 0.067 3.933 24 H 0.050 0.950 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.333 0.667 28 H -0.006 1.006 29 H 0.036 0.964 30 H 0.268 0.732 31 H 0.124 0.876 32 H 0.158 0.842 33 H 0.167 0.833 34 H 0.149 0.851 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.582 5.709 -25.538 26.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.051 3.949 3 H 0.091 0.909 4 N -0.304 5.304 5 C 0.050 3.950 6 C -0.570 4.570 7 H 0.047 0.953 8 C -0.191 4.191 9 N -0.590 5.590 10 Si 0.779 3.221 11 H -0.188 1.188 12 H -0.208 1.208 13 H -0.166 1.166 14 C 0.005 3.995 15 N -0.232 5.232 16 C -0.116 4.116 17 C -0.108 4.108 18 C -0.144 4.144 19 C -0.118 4.118 20 C -0.134 4.134 21 C -0.079 4.079 22 N -0.180 5.180 23 C -0.074 4.074 24 H 0.070 0.930 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.151 0.849 28 H 0.012 0.988 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.142 0.858 32 H 0.176 0.824 33 H 0.185 0.815 34 H 0.167 0.833 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.430 5.041 -24.640 25.191 hybrid contribution 0.982 1.206 0.273 1.579 sum -0.448 6.248 -24.367 25.159 Atomic orbital electron populations 1.21711 0.91737 1.02531 1.02444 1.20125 0.97381 0.94287 0.83060 0.90942 1.60435 1.33611 1.33346 1.03056 1.19861 0.95905 0.90902 0.88371 1.21298 1.43872 0.97112 0.94727 0.95273 1.25960 0.94328 1.04063 0.94777 1.70075 1.48004 1.39203 1.01733 0.85586 0.78938 0.78425 0.79185 1.18769 1.20804 1.16586 1.23667 0.96641 0.88428 0.90744 1.70401 1.22620 1.12810 1.17363 1.19682 1.04379 0.95092 0.92453 1.20295 0.99999 0.95125 0.95415 1.21021 0.99262 1.00107 0.93973 1.21357 0.98878 0.90606 1.00918 1.20341 1.01670 1.00810 0.90564 1.19285 1.05196 0.88576 0.94869 1.45402 1.50213 1.08429 1.13964 1.22347 1.05084 0.74837 1.05101 0.93047 0.91224 0.90494 0.84917 0.98849 0.94556 0.92310 0.85807 0.82449 0.81532 0.83298 0.88593 0.89050 0.87531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.83 9.40 71.98 0.68 -3.16 16 2 C 0.16 5.51 2.98 44.17 0.13 5.65 16 3 H 0.07 2.13 6.34 -2.39 -0.02 2.11 16 4 N -0.67 -29.51 6.27 -499.46 -3.13 -32.64 16 5 C 0.18 8.48 4.31 85.56 0.37 8.85 16 6 C -0.53 -31.68 9.87 25.60 0.25 -31.43 16 7 H 0.03 1.97 8.06 -2.91 -0.02 1.95 16 8 C 0.01 0.35 5.47 84.66 0.46 0.82 16 9 N -0.95 -60.44 13.96 21.45 0.30 -60.14 16 10 Si 0.96 43.31 27.47 68.60 1.88 45.19 16 11 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 12 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 13 H -0.24 -9.88 6.54 99.48 0.65 -9.23 16 14 C 0.27 9.23 6.36 137.92 0.88 10.10 16 15 N -0.51 -20.03 11.24 -179.96 -2.02 -22.05 16 16 C 0.00 0.08 7.23 39.45 0.29 0.36 16 17 C -0.09 -2.44 10.05 22.25 0.22 -2.22 16 18 C -0.12 -2.36 9.96 22.02 0.22 -2.15 16 19 C -0.10 -1.59 10.03 22.31 0.22 -1.37 16 20 C -0.11 -2.20 10.05 22.32 0.22 -1.98 16 21 C 0.03 0.83 6.87 38.86 0.27 1.10 16 22 N -0.49 -13.18 3.21 -528.82 -1.70 -14.88 16 23 C 0.07 1.07 10.91 127.77 1.39 2.46 16 24 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 25 H 0.07 2.09 7.45 -2.39 -0.02 2.08 16 26 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 27 H 0.33 15.55 8.34 -89.69 -0.75 14.80 16 28 H -0.01 -0.28 7.11 -2.39 -0.02 -0.29 16 29 H 0.04 1.67 6.86 -2.39 -0.02 1.65 16 30 H 0.27 15.77 8.31 -92.70 -0.77 15.00 16 31 H 0.12 3.30 8.06 -2.91 -0.02 3.27 16 32 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 33 H 0.17 1.37 8.06 -2.91 -0.02 1.34 16 34 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 35 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.09 1.42 6.89 -2.39 -0.02 1.41 16 37 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -77.42 310.54 1.21 -76.21 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 0.27 Total: 21.25 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: 5.61 Total: -12.95 kcal Atomic # 7 Polarization: -123.16 SS G_CDS: -6.55 Total: -129.71 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.88 Total: 45.19 kcal Total: -77.42 1.21 -76.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199880.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.081 kcal (2) G-P(sol) polarization free energy of solvation -77.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds