Wall clock time and date at job start Mon Mar 30 2020 07:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47191 * 2 1 4 4 N 1.46902 * 109.47197 * 239.99431 * 2 1 3 5 5 C 1.46906 * 110.99573 * 85.00442 * 4 2 1 6 6 C 1.50699 * 109.46990 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99734 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00116 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99947 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00011 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47244 * 60.00135 * 10 8 6 12 12 H 1.48506 * 109.47128 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47486 * 299.99779 * 10 8 6 14 14 C 1.50699 * 109.46719 * 120.00116 * 2 1 3 15 15 N 1.30109 * 124.95465 * 74.69223 * 14 2 1 16 16 C 1.35779 * 109.64808 * 179.89282 * 15 14 2 17 17 C 1.39739 * 133.60354 * 180.13557 * 16 15 14 18 18 C 1.36613 * 119.88619 * 180.29699 * 17 16 15 19 19 C 1.38780 * 120.66661 * 359.95314 * 18 17 16 20 20 C 1.37845 * 120.45345 * 0.02562 * 19 18 17 21 21 C 1.38838 * 119.68987 * 359.97438 * 20 19 18 22 22 N 1.36039 * 124.94892 * 254.99774 * 14 2 1 23 23 C 1.46496 * 126.34935 * 359.97438 * 22 14 2 24 24 H 1.09011 * 109.46887 * 60.00236 * 1 2 3 25 25 H 1.08999 * 109.47708 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47499 * 300.00664 * 1 2 3 27 27 H 1.00896 * 111.00219 * 208.96081 * 4 2 1 28 28 H 1.09002 * 109.46991 * 299.99841 * 5 4 2 29 29 H 1.09000 * 109.47202 * 60.00133 * 5 4 2 30 30 H 0.96998 * 120.00296 * 180.02562 * 9 8 6 31 31 H 1.07998 * 120.05787 * 0.27349 * 17 16 15 32 32 H 1.07999 * 119.66312 * 179.97438 * 18 17 16 33 33 H 1.07994 * 119.76850 * 180.02562 * 19 18 17 34 34 H 1.07997 * 120.15684 * 179.97438 * 20 19 18 35 35 H 1.09006 * 109.47247 * 89.99714 * 23 22 14 36 36 H 1.09001 * 109.47638 * 209.99822 * 23 22 14 37 37 H 1.08996 * 109.47392 * 330.00031 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0825 0.2225 -2.3469 6 6 2.5874 -0.5220 -3.5560 7 1 2.8362 -1.5702 -3.4797 8 6 2.7316 0.1350 -4.7595 9 7 2.4281 1.4113 -4.8525 10 14 3.3581 -0.7876 -6.2580 11 1 2.4362 -1.9093 -6.5699 12 1 3.4216 0.1374 -7.4181 13 1 4.7140 -1.3245 -5.9778 14 6 2.0322 -0.7104 1.2305 15 7 2.0152 -1.9995 1.4061 16 6 2.5431 -2.3019 2.6200 17 6 2.7654 -3.5008 3.3026 18 6 3.3245 -3.4809 4.5489 19 6 3.6768 -2.2794 5.1476 20 6 3.4671 -1.0847 4.4928 21 6 2.9000 -1.0853 3.2255 22 7 2.5641 -0.0970 2.3220 23 6 2.7467 1.3450 2.5048 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 2.9172 -1.1207 -1.0286 28 1 1.0871 0.6162 -2.5525 29 1 2.7590 1.0461 -2.1182 30 1 2.5292 1.8735 -5.6993 31 1 2.4953 -4.4414 2.8459 32 1 3.4944 -4.4095 5.0734 33 1 4.1182 -2.2806 6.1332 34 1 3.7427 -0.1525 4.9633 35 1 1.8559 1.7681 2.9694 36 1 3.6103 1.5237 3.1454 37 1 2.9095 1.8164 1.5356 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020199882.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:44 Heat of formation + Delta-G solvation = 73.123430 kcal Electronic energy + Delta-G solvation = -18710.579726 eV Core-core repulsion = 15874.418676 eV Total energy + Delta-G solvation = -2836.161050 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.08461 -37.63435 -35.81332 -34.13887 -32.77194 -30.56924 -30.15127 -28.54387 -26.94907 -26.20859 -23.91723 -22.15142 -21.77087 -20.97079 -19.38799 -17.30051 -17.05151 -16.52724 -15.82270 -15.39220 -14.67886 -14.58971 -14.16019 -14.05525 -13.59040 -13.40994 -13.10452 -12.79387 -12.34732 -12.02385 -11.92250 -11.62196 -11.58096 -11.42996 -11.28826 -10.90989 -10.70000 -10.51825 -10.29379 -9.94622 -9.67640 -9.22839 -8.49246 -8.24349 -8.00395 -7.37784 -6.04930 -4.06279 1.00209 1.55301 2.62899 2.90727 3.35101 3.38199 3.42580 3.94991 4.27309 4.41524 4.50584 4.63724 4.96141 4.97786 5.02425 5.10682 5.26119 5.31639 5.41389 5.45702 5.48574 5.68694 5.73358 5.77827 6.10867 6.14058 6.30957 6.47213 6.51140 6.60044 6.68522 6.92923 7.14288 7.20236 7.33086 7.75994 8.05596 8.14773 8.33263 8.54570 9.02544 9.58665 11.06271 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.029956 B = 0.004350 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.490647 B = 6435.845323 C = 6835.922039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.162 3.838 3 H 0.051 0.949 4 N -0.667 5.667 5 C 0.194 3.806 6 C -0.513 4.513 7 H 0.064 0.936 8 C 0.057 3.943 9 N -0.900 5.900 10 Si 0.900 3.100 11 H -0.275 1.275 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.293 3.707 15 N -0.469 5.469 16 C 0.047 3.953 17 C -0.062 4.062 18 C -0.134 4.134 19 C -0.110 4.110 20 C -0.110 4.110 21 C 0.040 3.960 22 N -0.494 5.494 23 C 0.077 3.923 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.044 0.956 27 H 0.336 0.664 28 H 0.033 0.967 29 H -0.014 1.014 30 H 0.262 0.738 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.117 0.883 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.076 -1.479 19.704 19.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.050 3.950 3 H 0.069 0.931 4 N -0.299 5.299 5 C 0.068 3.932 6 C -0.552 4.552 7 H 0.082 0.918 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.728 3.272 11 H -0.200 1.200 12 H -0.214 1.214 13 H -0.203 1.203 14 C 0.028 3.972 15 N -0.187 5.187 16 C -0.072 4.072 17 C -0.082 4.082 18 C -0.155 4.155 19 C -0.130 4.130 20 C -0.131 4.131 21 C -0.069 4.069 22 N -0.185 5.185 23 C -0.066 4.066 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.063 0.937 27 H 0.154 0.846 28 H 0.051 0.949 29 H 0.003 0.997 30 H 0.072 0.928 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.135 0.865 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.163 -2.022 18.837 18.946 hybrid contribution 1.472 0.920 -0.032 1.736 sum 1.635 -1.102 18.805 18.908 Atomic orbital electron populations 1.21740 0.92853 1.03217 1.01062 1.20085 0.96611 0.93831 0.84446 0.93110 1.60753 1.33470 1.33715 1.02004 1.19679 0.96721 0.90052 0.86775 1.21124 1.43348 0.96856 0.93843 0.91808 1.24965 0.95595 0.94904 0.98988 1.69944 1.48889 1.09006 1.26065 0.86519 0.79402 0.79508 0.81748 1.20042 1.21362 1.20271 1.24070 0.94894 0.88473 0.89792 1.70544 1.21236 1.11362 1.15566 1.19238 1.02442 0.93019 0.92501 1.20037 0.98428 0.95797 0.93935 1.20586 1.01475 0.98072 0.95360 1.20795 1.00917 0.91606 0.99692 1.19883 1.02517 0.98775 0.91951 1.18916 1.04777 0.89318 0.93884 1.45279 1.51565 1.06863 1.14749 1.21989 1.02926 0.77373 1.04292 0.91006 0.91125 0.93734 0.84583 0.94914 0.99662 0.92848 0.85415 0.85654 0.85665 0.86463 0.90713 0.89926 0.89088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 9.40 37.16 0.35 -1.82 16 2 C 0.16 2.94 2.97 -68.86 -0.20 2.74 16 3 H 0.05 0.88 6.33 -51.93 -0.33 0.55 16 4 N -0.67 -14.74 6.27 -109.22 -0.68 -15.43 16 5 C 0.19 5.00 5.24 -4.97 -0.03 4.98 16 6 C -0.51 -14.58 9.32 -34.44 -0.32 -14.90 16 7 H 0.06 1.81 7.81 -52.48 -0.41 1.40 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 10 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 11 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 C 0.29 5.14 6.36 -154.82 -0.98 4.15 16 15 N -0.47 -8.94 11.24 -8.24 -0.09 -9.03 16 16 C 0.05 0.79 7.23 -84.70 -0.61 0.18 16 17 C -0.06 -0.86 10.05 -39.61 -0.40 -1.26 16 18 C -0.13 -1.48 9.96 -39.97 -0.40 -1.88 16 19 C -0.11 -1.15 10.03 -39.52 -0.40 -1.54 16 20 C -0.11 -1.30 10.05 -39.50 -0.40 -1.70 16 21 C 0.04 0.60 6.87 -83.98 -0.58 0.02 16 22 N -0.49 -7.28 3.21 -118.50 -0.38 -7.66 16 23 C 0.08 0.78 10.92 59.84 0.65 1.44 16 24 H 0.07 1.24 7.45 -51.92 -0.39 0.86 16 25 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.34 7.58 8.34 -39.29 -0.33 7.25 16 28 H 0.03 0.89 7.44 -51.93 -0.39 0.51 16 29 H -0.01 -0.39 8.06 -51.93 -0.42 -0.80 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.13 1.61 8.06 -52.49 -0.42 1.18 16 32 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.09 0.92 6.87 -51.93 -0.36 0.57 16 LS Contribution 314.12 15.07 4.73 4.73 Total: -1.00 -32.38 314.12 -9.25 -41.63 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -5.13 Total: 2.85 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -3.41 Total: -8.07 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: -0.42 Total: -57.93 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.38 -9.25 -41.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199882.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.753 kcal (2) G-P(sol) polarization free energy of solvation -32.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds