Wall clock time and date at job start Mon Mar 30 2020 07:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47191 * 2 1 4 4 N 1.46902 * 109.47197 * 239.99431 * 2 1 3 5 5 C 1.46906 * 110.99573 * 85.00442 * 4 2 1 6 6 C 1.50699 * 109.46990 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99734 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00116 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99947 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00011 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47244 * 60.00135 * 10 8 6 12 12 H 1.48506 * 109.47128 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47486 * 299.99779 * 10 8 6 14 14 C 1.50699 * 109.46719 * 120.00116 * 2 1 3 15 15 N 1.30109 * 124.95465 * 74.69223 * 14 2 1 16 16 C 1.35779 * 109.64808 * 179.89282 * 15 14 2 17 17 C 1.39739 * 133.60354 * 180.13557 * 16 15 14 18 18 C 1.36613 * 119.88619 * 180.29699 * 17 16 15 19 19 C 1.38780 * 120.66661 * 359.95314 * 18 17 16 20 20 C 1.37845 * 120.45345 * 0.02562 * 19 18 17 21 21 C 1.38838 * 119.68987 * 359.97438 * 20 19 18 22 22 N 1.36039 * 124.94892 * 254.99774 * 14 2 1 23 23 C 1.46496 * 126.34935 * 359.97438 * 22 14 2 24 24 H 1.09011 * 109.46887 * 60.00236 * 1 2 3 25 25 H 1.08999 * 109.47708 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47499 * 300.00664 * 1 2 3 27 27 H 1.00896 * 111.00219 * 208.96081 * 4 2 1 28 28 H 1.09002 * 109.46991 * 299.99841 * 5 4 2 29 29 H 1.09000 * 109.47202 * 60.00133 * 5 4 2 30 30 H 0.96998 * 120.00296 * 180.02562 * 9 8 6 31 31 H 1.07998 * 120.05787 * 0.27349 * 17 16 15 32 32 H 1.07999 * 119.66312 * 179.97438 * 18 17 16 33 33 H 1.07994 * 119.76850 * 180.02562 * 19 18 17 34 34 H 1.07997 * 120.15684 * 179.97438 * 20 19 18 35 35 H 1.09006 * 109.47247 * 89.99714 * 23 22 14 36 36 H 1.09001 * 109.47638 * 209.99822 * 23 22 14 37 37 H 1.08996 * 109.47392 * 330.00031 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0825 0.2225 -2.3469 6 6 2.5874 -0.5220 -3.5560 7 1 2.8362 -1.5702 -3.4797 8 6 2.7316 0.1350 -4.7595 9 7 2.4281 1.4113 -4.8525 10 14 3.3581 -0.7876 -6.2580 11 1 2.4362 -1.9093 -6.5699 12 1 3.4216 0.1374 -7.4181 13 1 4.7140 -1.3245 -5.9778 14 6 2.0322 -0.7104 1.2305 15 7 2.0152 -1.9995 1.4061 16 6 2.5431 -2.3019 2.6200 17 6 2.7654 -3.5008 3.3026 18 6 3.3245 -3.4809 4.5489 19 6 3.6768 -2.2794 5.1476 20 6 3.4671 -1.0847 4.4928 21 6 2.9000 -1.0853 3.2255 22 7 2.5641 -0.0970 2.3220 23 6 2.7467 1.3450 2.5048 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 2.9172 -1.1207 -1.0286 28 1 1.0871 0.6162 -2.5525 29 1 2.7590 1.0461 -2.1182 30 1 2.5292 1.8735 -5.6993 31 1 2.4953 -4.4414 2.8459 32 1 3.4944 -4.4095 5.0734 33 1 4.1182 -2.2806 6.1332 34 1 3.7427 -0.1525 4.9633 35 1 1.8559 1.7681 2.9694 36 1 3.6103 1.5237 3.1454 37 1 2.9095 1.8164 1.5356 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020199882.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:43 Heat of formation + Delta-G solvation = 51.922577 kcal Electronic energy + Delta-G solvation = -18711.499064 eV Core-core repulsion = 15874.418676 eV Total energy + Delta-G solvation = -2837.080388 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.18929 -38.74131 -37.34738 -35.21846 -34.82195 -31.97754 -31.35378 -29.68837 -28.16836 -27.87172 -25.36382 -23.61324 -23.04172 -22.22988 -20.69828 -18.70861 -18.30875 -17.92195 -16.95829 -16.89266 -16.51568 -15.98091 -15.33945 -14.97660 -14.92781 -14.77463 -14.26640 -14.18251 -13.68278 -13.61885 -13.32156 -13.14476 -12.84338 -12.75088 -12.58140 -12.36000 -12.33632 -12.19166 -11.96200 -11.35472 -11.32685 -10.85094 -10.65933 -9.27579 -9.19815 -9.04377 -8.23477 -6.33453 -0.01522 0.59013 1.40949 1.44247 1.52030 1.59539 1.76207 2.40240 2.94102 3.05933 3.10267 3.33177 3.58039 3.81810 3.99010 4.12543 4.17272 4.26832 4.35351 4.46708 4.51910 4.57184 4.66644 4.74514 4.86182 4.90673 5.06312 5.20401 5.22033 5.27012 5.49487 5.59263 5.61145 5.63077 5.97937 6.02154 6.11376 6.38752 6.58504 6.83394 6.96752 7.36676 8.87704 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.029956 B = 0.004350 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.490647 B = 6435.845323 C = 6835.922039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.164 3.836 3 H 0.061 0.939 4 N -0.671 5.671 5 C 0.212 3.788 6 C -0.539 4.539 7 H 0.058 0.942 8 C 0.008 3.992 9 N -0.929 5.929 10 Si 0.969 3.031 11 H -0.270 1.270 12 H -0.279 1.279 13 H -0.269 1.269 14 C 0.273 3.727 15 N -0.509 5.509 16 C 0.003 3.997 17 C -0.087 4.087 18 C -0.123 4.123 19 C -0.098 4.098 20 C -0.114 4.114 21 C 0.028 3.972 22 N -0.491 5.491 23 C 0.068 3.932 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.331 0.669 28 H 0.014 0.986 29 H -0.033 1.033 30 H 0.266 0.734 31 H 0.126 0.874 32 H 0.159 0.841 33 H 0.167 0.833 34 H 0.148 0.852 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.195 -1.628 21.943 22.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.053 3.947 3 H 0.078 0.922 4 N -0.303 5.303 5 C 0.085 3.915 6 C -0.577 4.577 7 H 0.076 0.924 8 C -0.191 4.191 9 N -0.569 5.569 10 Si 0.794 3.206 11 H -0.195 1.195 12 H -0.204 1.204 13 H -0.194 1.194 14 C 0.007 3.993 15 N -0.229 5.229 16 C -0.115 4.115 17 C -0.106 4.106 18 C -0.143 4.143 19 C -0.117 4.117 20 C -0.135 4.135 21 C -0.081 4.081 22 N -0.180 5.180 23 C -0.073 4.073 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.093 0.907 27 H 0.149 0.851 28 H 0.032 0.968 29 H -0.015 1.015 30 H 0.075 0.925 31 H 0.144 0.856 32 H 0.177 0.823 33 H 0.185 0.815 34 H 0.166 0.834 35 H 0.114 0.886 36 H 0.126 0.874 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.279 -2.154 21.103 21.252 hybrid contribution 1.152 0.926 -0.543 1.575 sum 2.431 -1.228 20.561 20.740 Atomic orbital electron populations 1.21660 0.91974 1.02450 1.01950 1.20035 0.97208 0.93961 0.83515 0.92156 1.60613 1.33094 1.33512 1.03056 1.19309 0.94782 0.89731 0.87725 1.21457 1.44049 0.96875 0.95305 0.92420 1.25840 0.95481 0.95767 1.02002 1.70050 1.49440 1.10395 1.27053 0.85440 0.78990 0.78288 0.77909 1.19549 1.20381 1.19443 1.23600 0.96765 0.88482 0.90472 1.70391 1.22446 1.12549 1.17468 1.19696 1.04273 0.95059 0.92487 1.20297 0.99919 0.95073 0.95347 1.21032 0.99200 1.00067 0.94013 1.21352 0.98890 0.90592 1.00885 1.20338 1.01645 1.00840 0.90632 1.19316 1.05250 0.88561 0.94976 1.45393 1.50521 1.08333 1.13789 1.22315 1.05091 0.75020 1.04868 0.92094 0.92667 0.90723 0.85142 0.96819 1.01539 0.92486 0.85562 0.82319 0.81532 0.83444 0.88644 0.87393 0.89533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.19 9.40 71.98 0.68 -3.51 16 2 C 0.16 6.17 2.97 44.17 0.13 6.30 16 3 H 0.06 2.14 6.33 -2.39 -0.02 2.12 16 4 N -0.67 -31.09 6.27 -499.45 -3.13 -34.22 16 5 C 0.21 11.40 5.24 85.56 0.45 11.85 16 6 C -0.54 -31.46 9.32 25.60 0.24 -31.22 16 7 H 0.06 3.36 7.81 -2.91 -0.02 3.34 16 8 C 0.01 0.45 5.46 84.65 0.46 0.91 16 9 N -0.93 -55.64 13.29 21.45 0.28 -55.36 16 10 Si 0.97 44.99 29.54 68.60 2.03 47.02 16 11 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 12 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 13 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 14 C 0.27 9.80 6.36 137.92 0.88 10.67 16 15 N -0.51 -20.19 11.24 -179.97 -2.02 -22.22 16 16 C 0.00 0.11 7.23 39.45 0.29 0.40 16 17 C -0.09 -2.36 10.05 22.25 0.22 -2.14 16 18 C -0.12 -2.34 9.96 22.02 0.22 -2.12 16 19 C -0.10 -1.61 10.03 22.31 0.22 -1.39 16 20 C -0.11 -2.30 10.05 22.32 0.22 -2.08 16 21 C 0.03 0.81 6.87 38.86 0.27 1.08 16 22 N -0.49 -14.14 3.21 -528.83 -1.70 -15.83 16 23 C 0.07 1.27 10.92 127.77 1.39 2.66 16 24 H 0.06 2.19 7.45 -2.38 -0.02 2.17 16 25 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.33 15.74 8.34 -89.70 -0.75 14.99 16 28 H 0.01 0.78 7.44 -2.39 -0.02 0.77 16 29 H -0.03 -1.86 8.06 -2.39 -0.02 -1.88 16 30 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 31 H 0.13 3.27 8.06 -2.91 -0.02 3.25 16 32 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 33 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 34 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 35 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.09 1.69 6.87 -2.39 -0.02 1.68 16 Total: -1.00 -72.55 314.12 1.46 -71.10 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.32 Total: 18.08 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: 5.67 Total: -8.57 kcal Atomic # 7 Polarization: -121.06 SS G_CDS: -6.56 Total: -127.62 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -72.55 1.46 -71.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199882.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.018 kcal (2) G-P(sol) polarization free energy of solvation -72.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds