Wall clock time and date at job start Mon Mar 30 2020 07:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00061 * 2 1 4 4 H 1.48497 * 109.47094 * 269.99669 * 3 2 1 5 5 H 1.48504 * 109.47145 * 29.99971 * 3 2 1 6 6 H 1.48502 * 109.47062 * 149.99361 * 3 2 1 7 7 C 1.37873 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00331 * 359.97438 * 7 2 1 9 9 C 1.50707 * 120.00119 * 180.02562 * 7 2 1 10 10 N 1.46496 * 109.47231 * 180.02562 * 9 7 2 11 11 C 1.39674 * 120.00186 * 89.99726 * 10 9 7 12 12 C 1.38914 * 120.07423 * 269.15181 * 11 10 9 13 13 C 1.38095 * 119.92586 * 180.25816 * 12 11 10 14 14 C 1.38292 * 120.07205 * 359.44219 * 13 12 11 15 15 C 1.38282 * 120.14847 * 0.56184 * 14 13 12 16 16 C 1.38100 * 120.07671 * 359.71914 * 15 14 13 17 17 C 1.46503 * 119.99687 * 269.99363 * 10 9 7 18 18 C 1.52998 * 109.47229 * 237.75379 * 17 10 9 19 19 C 1.53000 * 109.47091 * 180.02562 * 18 17 10 20 20 C 1.53003 * 109.47198 * 60.00280 * 19 18 17 21 21 C 1.52998 * 109.46871 * 299.99855 * 20 19 18 22 22 C 1.53000 * 109.47091 * 60.00080 * 21 20 19 23 23 H 0.97003 * 119.99819 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.47279 * 59.99571 * 9 7 2 25 25 H 1.09007 * 109.46699 * 299.99984 * 9 7 2 26 26 H 1.08001 * 120.03536 * 359.97438 * 12 11 10 27 27 H 1.07996 * 119.96699 * 179.72316 * 13 12 11 28 28 H 1.08006 * 119.92575 * 180.27846 * 14 13 12 29 29 H 1.08006 * 119.96214 * 179.69226 * 15 14 13 30 30 H 1.08004 * 120.03804 * 179.97438 * 16 15 14 31 31 H 1.09000 * 109.46937 * 357.75768 * 17 10 9 32 32 H 1.08994 * 109.47278 * 300.00429 * 18 17 10 33 33 H 1.09000 * 109.46650 * 60.00344 * 18 17 10 34 34 H 1.09008 * 109.47257 * 300.00241 * 19 18 17 35 35 H 1.08997 * 109.47146 * 180.02562 * 19 18 17 36 36 H 1.09005 * 109.47109 * 180.02562 * 20 19 18 37 37 H 1.08994 * 109.46969 * 59.99798 * 20 19 18 38 38 H 1.09000 * 109.47478 * 300.00126 * 21 20 19 39 39 H 1.08994 * 109.47076 * 179.97438 * 21 20 19 40 40 H 1.08997 * 109.47146 * 179.97438 * 22 21 20 41 41 H 1.08994 * 109.47325 * 59.99703 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5116 -1.1941 0.0011 10 7 3.9999 -2.5753 0.0010 11 6 4.2330 -3.2335 -1.2087 12 6 3.2211 -3.9768 -1.8031 13 6 3.4567 -4.6307 -2.9964 14 6 4.6947 -4.5368 -3.6054 15 6 5.7042 -3.7979 -3.0163 16 6 5.4772 -3.1462 -1.8201 17 6 4.2436 -3.2661 1.2697 18 6 5.7010 -3.7283 1.3270 19 6 5.9554 -4.4503 2.6517 20 6 5.0307 -5.6648 2.7564 21 6 3.5733 -5.2026 2.6992 22 6 3.3189 -4.4806 1.3744 23 1 -0.4850 0.8401 -0.0004 24 1 3.8746 -0.6801 0.8910 25 1 3.8752 -0.6805 -0.8889 26 1 2.2527 -4.0468 -1.3302 27 1 2.6718 -5.2123 -3.4569 28 1 4.8749 -5.0455 -4.5410 29 1 6.6715 -3.7307 -3.4921 30 1 6.2663 -2.5695 -1.3604 31 1 4.0454 -2.5856 2.0978 32 1 5.8992 -4.4087 0.4989 33 1 6.3597 -2.8631 1.2520 34 1 5.7570 -3.7702 3.4802 35 1 6.9937 -4.7792 2.6927 36 1 5.2116 -6.1790 3.7004 37 1 5.2290 -6.3449 1.9281 38 1 3.3750 -4.5225 3.5275 39 1 2.9146 -6.0678 2.7733 40 1 2.2806 -4.1517 1.3334 41 1 3.5172 -5.1607 0.5461 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020210332.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:29 Heat of formation + Delta-G solvation = 17.159011 kcal Electronic energy + Delta-G solvation = -19975.108764 eV Core-core repulsion = 17240.061258 eV Total energy + Delta-G solvation = -2735.047506 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.28475 -37.69922 -34.84450 -32.43141 -30.63417 -30.15443 -29.77443 -29.25088 -26.13189 -22.58414 -22.28126 -22.09360 -21.57418 -19.87547 -19.23758 -16.71983 -16.38970 -15.64128 -14.95434 -14.51802 -14.39099 -13.95550 -13.90585 -13.81007 -13.23064 -12.89777 -12.55183 -12.37754 -12.21898 -11.86916 -11.82412 -11.54473 -11.21898 -11.04868 -10.81239 -10.70574 -10.64555 -10.45054 -10.14685 -10.07256 -9.81509 -9.75437 -9.30903 -8.53567 -8.40032 -8.03045 -6.78793 -6.02775 -3.99341 1.89835 1.93908 3.29841 3.37126 3.38869 4.28123 4.33228 4.43778 5.00917 5.10282 5.21912 5.29846 5.37915 5.44784 5.52574 5.59864 5.60650 5.82191 5.84723 5.91135 5.92516 5.99200 6.07078 6.12552 6.24041 6.26413 6.40063 6.41779 6.48252 6.54685 6.59249 6.79466 6.87013 6.88319 6.96215 6.98249 7.01586 7.33645 7.42958 7.74184 8.30146 8.66517 8.82310 9.06838 9.61196 11.10777 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014132 B = 0.008391 C = 0.006406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.889400 B = 3335.979727 C = 4369.856355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.872 3.128 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.525 4.525 8 H 0.075 0.925 9 C 0.245 3.755 10 N -0.670 5.670 11 C 0.207 3.793 12 C -0.116 4.116 13 C -0.121 4.121 14 C -0.141 4.141 15 C -0.123 4.123 16 C -0.137 4.137 17 C 0.186 3.814 18 C -0.132 4.132 19 C -0.115 4.115 20 C -0.117 4.117 21 C -0.117 4.117 22 C -0.131 4.131 23 H 0.262 0.738 24 H 0.019 0.981 25 H 0.011 0.989 26 H 0.123 0.877 27 H 0.113 0.887 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.498 -9.949 0.668 15.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.699 3.301 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.564 4.564 8 H 0.094 0.906 9 C 0.124 3.876 10 N -0.395 5.395 11 C 0.114 3.886 12 C -0.136 4.136 13 C -0.140 4.140 14 C -0.159 4.159 15 C -0.142 4.142 16 C -0.158 4.158 17 C 0.081 3.919 18 C -0.171 4.171 19 C -0.153 4.153 20 C -0.155 4.155 21 C -0.155 4.155 22 C -0.170 4.170 23 H 0.072 0.928 24 H 0.037 0.963 25 H 0.029 0.971 26 H 0.141 0.859 27 H 0.131 0.869 28 H 0.129 0.871 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.328 -9.757 0.702 14.967 hybrid contribution 0.185 0.991 -0.150 1.019 sum 11.513 -8.767 0.553 14.481 Atomic orbital electron populations 1.69916 1.06172 1.26671 1.51393 1.24928 0.94696 0.98846 0.94950 0.86917 0.80370 0.84228 0.78555 1.20308 1.21287 1.19069 1.21715 0.90375 0.94407 1.49911 0.90644 1.19307 0.94336 0.78366 0.95576 1.46007 1.79789 1.13880 0.99809 1.17401 0.91079 0.92221 0.87872 1.21852 0.99708 0.96692 0.95326 1.21031 0.96798 1.00209 0.95931 1.20956 0.93955 1.01066 0.99958 1.20905 0.98684 0.98683 0.95946 1.21635 0.97604 1.00517 0.95995 1.20451 0.91639 0.92855 0.86955 1.22048 0.98311 0.99770 0.96947 1.21494 0.98585 0.97178 0.98073 1.21529 0.95539 0.97531 1.00893 1.21514 0.95735 0.99747 0.98478 1.22032 1.01148 0.97520 0.96314 0.92847 0.96331 0.97114 0.85865 0.86870 0.87089 0.87038 0.86790 0.90585 0.92169 0.92335 0.92155 0.92655 0.92705 0.92388 0.92098 0.92572 0.91128 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.60 13.96 55.43 0.77 -26.82 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.87 21.45 27.47 -169.99 -4.67 16.78 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.52 -14.64 9.94 -34.44 -0.34 -14.98 16 8 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 9 C 0.25 5.87 4.49 -5.19 -0.02 5.84 16 10 N -0.67 -13.63 2.31 -165.54 -0.38 -14.01 16 11 C 0.21 3.95 4.05 -83.79 -0.34 3.61 16 12 C -0.12 -2.18 8.79 -39.38 -0.35 -2.52 16 13 C -0.12 -1.94 10.04 -39.61 -0.40 -2.34 16 14 C -0.14 -2.06 10.04 -39.55 -0.40 -2.46 16 15 C -0.12 -1.83 10.04 -39.62 -0.40 -2.23 16 16 C -0.14 -2.32 8.91 -39.38 -0.35 -2.67 16 17 C 0.19 3.27 2.64 -67.93 -0.18 3.09 16 18 C -0.13 -1.94 4.85 -26.73 -0.13 -2.07 16 19 C -0.12 -1.42 5.92 -26.73 -0.16 -1.58 16 20 C -0.12 -1.41 5.92 -26.73 -0.16 -1.57 16 21 C -0.12 -1.59 5.92 -26.73 -0.16 -1.74 16 22 C -0.13 -2.18 4.95 -26.73 -0.13 -2.31 16 23 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 24 H 0.02 0.45 6.96 -51.93 -0.36 0.09 16 25 H 0.01 0.27 7.48 -51.93 -0.39 -0.12 16 26 H 0.12 2.51 8.06 -52.49 -0.42 2.08 16 27 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 28 H 0.11 1.32 8.06 -52.48 -0.42 0.89 16 29 H 0.11 1.36 8.06 -52.48 -0.42 0.93 16 30 H 0.11 1.83 8.06 -52.48 -0.42 1.41 16 31 H 0.08 1.42 7.78 -51.93 -0.40 1.02 16 32 H 0.06 0.91 7.07 -51.93 -0.37 0.55 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.74 8.14 -51.92 -0.42 0.31 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.06 0.95 7.02 -51.93 -0.36 0.58 16 LS Contribution 324.57 15.07 4.89 4.89 Total: -1.00 -29.53 324.57 -9.97 -39.49 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -6.97 Total: 1.77 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: -3.61 Total: -22.11 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: 0.39 Total: -40.83 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.53 -9.97 -39.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020210332.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.652 kcal (2) G-P(sol) polarization free energy of solvation -29.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds