Wall clock time and date at job start Mon Mar 30 2020 07:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00061 * 2 1 4 4 H 1.48497 * 109.47094 * 269.99669 * 3 2 1 5 5 H 1.48504 * 109.47145 * 29.99971 * 3 2 1 6 6 H 1.48502 * 109.47062 * 149.99361 * 3 2 1 7 7 C 1.37873 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00331 * 359.97438 * 7 2 1 9 9 C 1.50707 * 120.00119 * 180.02562 * 7 2 1 10 10 N 1.46496 * 109.47231 * 180.02562 * 9 7 2 11 11 C 1.39674 * 120.00186 * 89.99726 * 10 9 7 12 12 C 1.38914 * 120.07423 * 269.15181 * 11 10 9 13 13 C 1.38095 * 119.92586 * 180.25816 * 12 11 10 14 14 C 1.38292 * 120.07205 * 359.44219 * 13 12 11 15 15 C 1.38282 * 120.14847 * 0.56184 * 14 13 12 16 16 C 1.38100 * 120.07671 * 359.71914 * 15 14 13 17 17 C 1.46503 * 119.99687 * 269.99363 * 10 9 7 18 18 C 1.52998 * 109.47229 * 237.75379 * 17 10 9 19 19 C 1.53000 * 109.47091 * 180.02562 * 18 17 10 20 20 C 1.53003 * 109.47198 * 60.00280 * 19 18 17 21 21 C 1.52998 * 109.46871 * 299.99855 * 20 19 18 22 22 C 1.53000 * 109.47091 * 60.00080 * 21 20 19 23 23 H 0.97003 * 119.99819 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.47279 * 59.99571 * 9 7 2 25 25 H 1.09007 * 109.46699 * 299.99984 * 9 7 2 26 26 H 1.08001 * 120.03536 * 359.97438 * 12 11 10 27 27 H 1.07996 * 119.96699 * 179.72316 * 13 12 11 28 28 H 1.08006 * 119.92575 * 180.27846 * 14 13 12 29 29 H 1.08006 * 119.96214 * 179.69226 * 15 14 13 30 30 H 1.08004 * 120.03804 * 179.97438 * 16 15 14 31 31 H 1.09000 * 109.46937 * 357.75768 * 17 10 9 32 32 H 1.08994 * 109.47278 * 300.00429 * 18 17 10 33 33 H 1.09000 * 109.46650 * 60.00344 * 18 17 10 34 34 H 1.09008 * 109.47257 * 300.00241 * 19 18 17 35 35 H 1.08997 * 109.47146 * 180.02562 * 19 18 17 36 36 H 1.09005 * 109.47109 * 180.02562 * 20 19 18 37 37 H 1.08994 * 109.46969 * 59.99798 * 20 19 18 38 38 H 1.09000 * 109.47478 * 300.00126 * 21 20 19 39 39 H 1.08994 * 109.47076 * 179.97438 * 21 20 19 40 40 H 1.08997 * 109.47146 * 179.97438 * 22 21 20 41 41 H 1.08994 * 109.47325 * 59.99703 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5116 -1.1941 0.0011 10 7 3.9999 -2.5753 0.0010 11 6 4.2330 -3.2335 -1.2087 12 6 3.2211 -3.9768 -1.8031 13 6 3.4567 -4.6307 -2.9964 14 6 4.6947 -4.5368 -3.6054 15 6 5.7042 -3.7979 -3.0163 16 6 5.4772 -3.1462 -1.8201 17 6 4.2436 -3.2661 1.2697 18 6 5.7010 -3.7283 1.3270 19 6 5.9554 -4.4503 2.6517 20 6 5.0307 -5.6648 2.7564 21 6 3.5733 -5.2026 2.6992 22 6 3.3189 -4.4806 1.3744 23 1 -0.4850 0.8401 -0.0004 24 1 3.8746 -0.6801 0.8910 25 1 3.8752 -0.6805 -0.8889 26 1 2.2527 -4.0468 -1.3302 27 1 2.6718 -5.2123 -3.4569 28 1 4.8749 -5.0455 -4.5410 29 1 6.6715 -3.7307 -3.4921 30 1 6.2663 -2.5695 -1.3604 31 1 4.0454 -2.5856 2.0978 32 1 5.8992 -4.4087 0.4989 33 1 6.3597 -2.8631 1.2520 34 1 5.7570 -3.7702 3.4802 35 1 6.9937 -4.7792 2.6927 36 1 5.2116 -6.1790 3.7004 37 1 5.2290 -6.3449 1.9281 38 1 3.3750 -4.5225 3.5275 39 1 2.9146 -6.0678 2.7733 40 1 2.2806 -4.1517 1.3334 41 1 3.5172 -5.1607 0.5461 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020210332.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:29 Heat of formation + Delta-G solvation = 2.528416 kcal Electronic energy + Delta-G solvation = -19975.743194 eV Core-core repulsion = 17240.061258 eV Total energy + Delta-G solvation = -2735.681936 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.64222 -38.92784 -36.36756 -34.52230 -31.88741 -31.38266 -31.04569 -31.01331 -27.82720 -24.09598 -23.73692 -23.49296 -22.83031 -21.24937 -20.51577 -18.91835 -17.72772 -16.93702 -16.73410 -15.99951 -15.64835 -15.61477 -15.10131 -15.02400 -14.66733 -14.39639 -14.17253 -13.91320 -13.55167 -13.32264 -13.23515 -13.00698 -12.78153 -12.55389 -12.34291 -12.13080 -11.96672 -11.87603 -11.78633 -11.57166 -11.33919 -11.08257 -10.97209 -10.75975 -9.70065 -9.37109 -8.41414 -8.25936 -6.29542 0.59585 0.62807 1.34012 1.34984 1.45991 2.34238 2.78023 3.01635 3.06962 3.84366 3.96570 4.13317 4.19530 4.24540 4.31930 4.38285 4.42830 4.55879 4.65788 4.70409 4.71306 4.78020 4.81814 4.85149 4.95566 5.04081 5.08047 5.18966 5.23025 5.26179 5.28666 5.30782 5.38654 5.53906 5.57364 5.59723 5.63563 5.71900 5.98674 6.13198 6.25565 6.72384 6.88171 7.24381 7.39777 8.89949 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014132 B = 0.008391 C = 0.006406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.889400 B = 3335.979727 C = 4369.856355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.005 3.995 3 Si 0.945 3.055 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.244 1.244 7 C -0.526 4.526 8 H 0.027 0.973 9 C 0.256 3.744 10 N -0.676 5.676 11 C 0.180 3.820 12 C -0.144 4.144 13 C -0.124 4.124 14 C -0.132 4.132 15 C -0.114 4.114 16 C -0.141 4.141 17 C 0.180 3.820 18 C -0.118 4.118 19 C -0.112 4.112 20 C -0.111 4.111 21 C -0.113 4.113 22 C -0.121 4.121 23 H 0.264 0.736 24 H 0.023 0.977 25 H 0.010 0.990 26 H 0.086 0.914 27 H 0.130 0.870 28 H 0.150 0.850 29 H 0.150 0.850 30 H 0.124 0.876 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.025 0.975 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.133 -10.353 0.037 18.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.192 4.192 3 Si 0.769 3.231 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.168 1.168 7 C -0.565 4.565 8 H 0.046 0.954 9 C 0.133 3.867 10 N -0.401 5.401 11 C 0.088 3.912 12 C -0.165 4.165 13 C -0.143 4.143 14 C -0.150 4.150 15 C -0.132 4.132 16 C -0.161 4.161 17 C 0.076 3.924 18 C -0.157 4.157 19 C -0.150 4.150 20 C -0.149 4.149 21 C -0.152 4.152 22 C -0.160 4.160 23 H 0.073 0.927 24 H 0.041 0.959 25 H 0.028 0.972 26 H 0.104 0.896 27 H 0.148 0.852 28 H 0.167 0.833 29 H 0.168 0.832 30 H 0.142 0.858 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.044 0.956 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 14.987 -10.200 0.077 18.129 hybrid contribution -1.039 0.991 -0.025 1.436 sum 13.948 -9.209 0.052 16.714 Atomic orbital electron populations 1.70088 1.08238 1.27854 1.53131 1.25892 0.95564 1.03203 0.94535 0.85747 0.79640 0.78689 0.79066 1.19523 1.20820 1.16778 1.21965 0.92731 0.92659 1.49170 0.95425 1.18988 0.91366 0.80975 0.95334 1.45958 1.79756 1.12882 1.01474 1.17610 0.92364 0.93353 0.87908 1.21728 0.98492 0.99114 0.97127 1.21267 0.98457 0.99733 0.94817 1.21382 0.92673 1.00115 1.00795 1.21339 1.00264 0.96884 0.94723 1.21730 0.96583 1.00999 0.96806 1.20613 0.94111 0.92363 0.85352 1.21889 0.95384 0.99932 0.98475 1.21505 1.00046 0.97010 0.96425 1.21502 0.93506 0.97558 1.02321 1.21507 0.97866 0.99643 0.96139 1.21888 0.98360 0.97559 0.98237 0.92722 0.95928 0.97249 0.89614 0.85188 0.83278 0.83246 0.85827 0.92419 0.92395 0.92197 0.91931 0.90178 0.90204 0.92185 0.92274 0.91676 0.95586 0.93003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.97 13.96 21.45 0.30 -60.67 16 2 C 0.00 0.28 5.47 84.65 0.46 0.75 16 3 Si 0.95 44.87 27.47 68.60 1.88 46.75 16 4 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 5 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 6 H -0.24 -10.66 6.54 99.48 0.65 -10.01 16 7 C -0.53 -31.09 9.94 25.60 0.25 -30.83 16 8 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16 9 C 0.26 12.59 4.49 85.64 0.38 12.98 16 10 N -0.68 -28.56 2.31 -677.65 -1.57 -30.13 16 11 C 0.18 7.00 4.05 38.21 0.15 7.16 16 12 C -0.14 -5.72 8.79 22.40 0.20 -5.52 16 13 C -0.12 -3.91 10.04 22.25 0.22 -3.69 16 14 C -0.13 -3.41 10.04 22.29 0.22 -3.19 16 15 C -0.11 -2.96 10.04 22.25 0.22 -2.74 16 16 C -0.14 -4.53 8.91 22.40 0.20 -4.33 16 17 C 0.18 6.54 2.64 44.99 0.12 6.66 16 18 C -0.12 -3.33 4.85 30.59 0.15 -3.18 16 19 C -0.11 -2.48 5.92 30.60 0.18 -2.30 16 20 C -0.11 -2.43 5.92 30.59 0.18 -2.25 16 21 C -0.11 -3.09 5.92 30.59 0.18 -2.91 16 22 C -0.12 -4.31 4.95 30.60 0.15 -4.16 16 23 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 24 H 0.02 1.09 6.96 -2.39 -0.02 1.08 16 25 H 0.01 0.47 7.48 -2.38 -0.02 0.45 16 26 H 0.09 3.93 8.06 -2.91 -0.02 3.91 16 27 H 0.13 3.53 8.06 -2.91 -0.02 3.50 16 28 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 29 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 30 H 0.12 3.67 8.06 -2.91 -0.02 3.65 16 31 H 0.06 2.26 7.78 -2.39 -0.02 2.24 16 32 H 0.06 1.67 7.07 -2.39 -0.02 1.65 16 33 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.08 1.40 8.14 -2.38 -0.02 1.39 16 37 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.05 1.85 7.02 -2.39 -0.02 1.84 16 Total: -1.00 -68.49 324.57 4.81 -63.67 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 0.91 Total: 17.95 kcal Atomic # 6 Polarization: -40.86 SS G_CDS: 3.29 Total: -37.57 kcal Atomic # 7 Polarization: -89.53 SS G_CDS: -1.27 Total: -90.80 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.88 Total: 46.75 kcal Total: -68.49 4.81 -63.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020210332.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.203 kcal (2) G-P(sol) polarization free energy of solvation -68.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds