Wall clock time and date at job start Mon Mar 30 2020 07:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46503 * 109.46787 * 2 1 4 4 C 1.36036 * 126.35074 * 269.98378 * 3 2 1 5 5 C 1.50700 * 124.94888 * 0.02562 * 4 3 2 6 6 N 1.46907 * 109.46880 * 90.00101 * 5 4 3 7 7 C 1.46900 * 110.99710 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.46904 * 180.02562 * 7 6 5 9 9 H 1.07999 * 119.99788 * 359.97438 * 8 7 6 10 10 C 1.37873 * 119.99886 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00153 * 359.97438 * 10 8 7 12 12 Si 1.86808 * 119.99924 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47051 * 59.99995 * 12 10 8 14 14 H 1.48498 * 109.46881 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.47074 * 299.99743 * 12 10 8 16 16 N 1.30106 * 110.10195 * 180.02562 * 4 3 2 17 17 C 1.35787 * 109.64359 * 359.97438 * 16 4 3 18 18 C 1.39734 * 133.60143 * 179.97438 * 17 16 4 19 19 C 1.36605 * 119.88806 * 180.02562 * 18 17 16 20 20 C 1.38776 * 120.66622 * 359.97438 * 19 18 17 21 21 C 1.37851 * 120.45485 * 0.03810 * 20 19 18 22 22 C 1.38058 * 126.34607 * 90.02555 * 3 2 1 23 23 H 1.09003 * 109.46577 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46734 * 299.99857 * 1 2 3 25 25 H 1.08994 * 109.47216 * 59.99900 * 1 2 3 26 26 H 1.08997 * 109.47000 * 240.00547 * 2 1 3 27 27 H 1.08994 * 109.47216 * 120.00100 * 2 1 3 28 28 H 1.08993 * 109.47363 * 209.99975 * 5 4 3 29 29 H 1.09003 * 109.47256 * 330.00646 * 5 4 3 30 30 H 1.00897 * 111.00185 * 56.04677 * 6 5 4 31 31 H 1.08997 * 109.47196 * 300.00161 * 7 6 5 32 32 H 1.09003 * 109.47032 * 60.00212 * 7 6 5 33 33 H 0.96999 * 119.99894 * 180.02562 * 11 10 8 34 34 H 1.08009 * 120.05649 * 0.29744 * 18 17 16 35 35 H 1.08001 * 119.66343 * 179.97438 * 19 18 17 36 36 H 1.08002 * 119.77372 * 180.02562 * 20 19 18 37 37 H 1.08000 * 120.15788 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2874 2.1414 -1.0956 5 6 2.1262 1.6859 -2.5231 6 7 0.7681 2.0000 -2.9869 7 6 0.5743 1.5698 -4.3780 8 6 -0.8267 1.9084 -4.8180 9 1 -1.5054 2.3941 -4.1325 10 6 -1.2424 1.5970 -6.0952 11 7 -0.4161 1.0050 -6.9297 12 14 -2.9794 2.0161 -6.6403 13 1 -3.1885 3.4830 -6.5425 14 1 -3.1752 1.5812 -8.0466 15 1 -3.9548 1.3176 -5.7653 16 7 2.7041 3.3189 -0.7316 17 6 2.7303 3.3949 0.6239 18 6 3.0865 4.4009 1.5260 19 6 3.0047 4.1703 2.8699 20 6 2.5697 2.9440 3.3524 21 6 2.2133 1.9369 2.4812 22 6 2.2915 2.1525 1.1120 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 2.8529 2.1993 -3.1526 29 1 2.2904 0.6099 -2.5819 30 1 0.5685 2.9834 -2.8817 31 1 1.2903 2.0827 -5.0201 32 1 0.7280 0.4930 -4.4501 33 1 -0.7085 0.7863 -7.8283 34 1 3.4218 5.3607 1.1612 35 1 3.2813 4.9503 3.5639 36 1 2.5101 2.7775 4.4179 37 1 1.8758 0.9843 2.8620 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037979092.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:21 Heat of formation + Delta-G solvation = 66.569371 kcal Electronic energy + Delta-G solvation = -18684.239155 eV Core-core repulsion = 15847.793899 eV Total energy + Delta-G solvation = -2836.445255 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.03160 -37.50199 -35.29581 -34.82389 -32.54377 -31.12928 -29.73172 -29.24732 -27.32802 -24.79542 -23.77420 -22.00290 -21.79862 -21.40561 -19.67238 -17.34392 -17.02457 -16.47878 -15.51510 -15.28289 -14.70567 -14.49630 -14.32351 -14.02611 -13.64462 -13.43628 -13.24864 -12.87728 -12.24424 -12.10402 -12.02182 -11.55346 -11.47706 -11.29768 -11.27256 -11.11907 -10.77099 -10.74128 -10.24641 -10.01996 -9.73335 -9.30000 -8.53880 -8.19465 -7.98760 -7.48386 -6.08403 -4.10676 1.04124 1.60298 2.72421 2.93749 3.31518 3.35398 3.38661 3.96818 4.30011 4.40626 4.57521 4.67826 5.01088 5.03629 5.09420 5.21438 5.27839 5.33244 5.46382 5.48229 5.49127 5.69426 5.74194 5.87299 5.90216 5.98144 6.20547 6.40408 6.53334 6.57685 6.65243 6.96395 7.08212 7.28233 7.32504 7.68556 8.02153 8.10941 8.23461 8.46194 8.97292 9.54430 11.02577 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.031748 B = 0.004234 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.729496 B = 6611.350901 C = 6824.223491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.111 3.889 3 N -0.478 5.478 4 C 0.310 3.690 5 C 0.130 3.870 6 N -0.682 5.682 7 C 0.195 3.805 8 C -0.515 4.515 9 H 0.062 0.938 10 C 0.058 3.942 11 N -0.897 5.897 12 Si 0.900 3.100 13 H -0.276 1.276 14 H -0.287 1.287 15 H -0.276 1.276 16 N -0.500 5.500 17 C 0.049 3.951 18 C -0.067 4.067 19 C -0.134 4.134 20 C -0.113 4.113 21 C -0.108 4.108 22 C 0.043 3.957 23 H 0.071 0.929 24 H 0.054 0.946 25 H 0.089 0.911 26 H 0.094 0.906 27 H 0.081 0.919 28 H 0.060 0.940 29 H 0.084 0.916 30 H 0.338 0.662 31 H -0.008 1.008 32 H 0.030 0.970 33 H 0.263 0.737 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.233 -0.657 18.234 19.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.010 4.010 3 N -0.167 5.167 4 C 0.044 3.956 5 C -0.002 4.002 6 N -0.314 5.314 7 C 0.069 3.931 8 C -0.554 4.554 9 H 0.080 0.920 10 C -0.144 4.144 11 N -0.536 5.536 12 Si 0.728 3.272 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.202 1.202 16 N -0.220 5.220 17 C -0.070 4.070 18 C -0.086 4.086 19 C -0.155 4.155 20 C -0.133 4.133 21 C -0.129 4.129 22 C -0.066 4.066 23 H 0.090 0.910 24 H 0.073 0.927 25 H 0.108 0.892 26 H 0.113 0.887 27 H 0.100 0.900 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.156 0.844 31 H 0.010 0.990 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.156 -0.810 17.745 18.800 hybrid contribution -0.674 0.098 -0.322 0.753 sum 5.482 -0.712 17.423 18.279 Atomic orbital electron populations 1.22199 0.93564 1.03022 1.04307 1.21756 0.96364 0.79159 1.03760 1.45408 1.53393 1.13148 1.04772 1.23839 0.94414 0.86302 0.91079 1.20427 0.94262 1.00681 0.84785 1.60786 1.19952 1.23871 1.26818 1.19597 0.96674 0.96153 0.80645 1.21082 0.97553 1.39336 0.97436 0.91978 1.24963 0.97783 0.95157 0.96476 1.69943 1.35495 1.41576 1.06621 0.86530 0.84383 0.78849 0.77470 1.20201 1.21302 1.20176 1.70480 1.23110 1.17870 1.10537 1.19125 1.03794 0.93617 0.90449 1.19991 0.99497 0.97579 0.91572 1.20559 1.02603 0.97565 0.94730 1.20783 1.00433 0.93126 0.98910 1.19903 1.03993 1.00040 0.88922 1.18915 1.05090 0.93173 0.89445 0.90983 0.92734 0.89228 0.88725 0.90026 0.92241 0.89774 0.84449 0.99030 0.95184 0.92767 0.85665 0.85766 0.85729 0.86440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 10.24 37.16 0.38 -1.77 16 2 C 0.11 1.33 6.65 -4.04 -0.03 1.30 16 3 N -0.48 -7.24 2.81 -111.15 -0.31 -7.55 16 4 C 0.31 5.37 7.37 -154.83 -1.14 4.23 16 5 C 0.13 2.29 5.97 -4.97 -0.03 2.26 16 6 N -0.68 -14.17 6.48 -116.33 -0.75 -14.92 16 7 C 0.20 4.90 5.44 -4.97 -0.03 4.87 16 8 C -0.52 -14.23 9.32 -34.44 -0.32 -14.55 16 9 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 10 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 11 N -0.90 -26.20 13.29 55.43 0.74 -25.46 16 12 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 14 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 N -0.50 -9.31 11.27 -8.24 -0.09 -9.41 16 17 C 0.05 0.82 7.23 -84.70 -0.61 0.21 16 18 C -0.07 -0.92 10.05 -39.61 -0.40 -1.32 16 19 C -0.13 -1.49 9.96 -39.97 -0.40 -1.89 16 20 C -0.11 -1.20 10.03 -39.52 -0.40 -1.60 16 21 C -0.11 -1.32 10.05 -39.50 -0.40 -1.71 16 22 C 0.04 0.66 6.88 -83.98 -0.58 0.08 16 23 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 26 H 0.09 1.07 6.99 -51.93 -0.36 0.71 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.08 1.35 7.01 -51.93 -0.36 0.99 16 30 H 0.34 7.25 8.71 -39.29 -0.34 6.90 16 31 H -0.01 -0.22 8.14 -51.93 -0.42 -0.64 16 32 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.13 1.55 8.06 -52.48 -0.42 1.12 16 35 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 36 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 317.41 15.07 4.78 4.78 Total: -1.00 -31.00 317.41 -9.97 -40.96 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -5.27 Total: 3.56 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -4.04 Total: -8.36 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: -0.42 Total: -57.34 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.00 -9.97 -40.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037979092.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.534 kcal (2) G-P(sol) polarization free energy of solvation -30.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds