Wall clock time and date at job start Mon Mar 30 2020 07:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46503 * 109.46787 * 2 1 4 4 C 1.36036 * 126.35074 * 269.98378 * 3 2 1 5 5 C 1.50700 * 124.94888 * 0.02562 * 4 3 2 6 6 N 1.46907 * 109.46880 * 90.00101 * 5 4 3 7 7 C 1.46900 * 110.99710 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.46904 * 180.02562 * 7 6 5 9 9 H 1.07999 * 119.99788 * 359.97438 * 8 7 6 10 10 C 1.37873 * 119.99886 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00153 * 359.97438 * 10 8 7 12 12 Si 1.86808 * 119.99924 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47051 * 59.99995 * 12 10 8 14 14 H 1.48498 * 109.46881 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.47074 * 299.99743 * 12 10 8 16 16 N 1.30106 * 110.10195 * 180.02562 * 4 3 2 17 17 C 1.35787 * 109.64359 * 359.97438 * 16 4 3 18 18 C 1.39734 * 133.60143 * 179.97438 * 17 16 4 19 19 C 1.36605 * 119.88806 * 180.02562 * 18 17 16 20 20 C 1.38776 * 120.66622 * 359.97438 * 19 18 17 21 21 C 1.37851 * 120.45485 * 0.03810 * 20 19 18 22 22 C 1.38058 * 126.34607 * 90.02555 * 3 2 1 23 23 H 1.09003 * 109.46577 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46734 * 299.99857 * 1 2 3 25 25 H 1.08994 * 109.47216 * 59.99900 * 1 2 3 26 26 H 1.08997 * 109.47000 * 240.00547 * 2 1 3 27 27 H 1.08994 * 109.47216 * 120.00100 * 2 1 3 28 28 H 1.08993 * 109.47363 * 209.99975 * 5 4 3 29 29 H 1.09003 * 109.47256 * 330.00646 * 5 4 3 30 30 H 1.00897 * 111.00185 * 56.04677 * 6 5 4 31 31 H 1.08997 * 109.47196 * 300.00161 * 7 6 5 32 32 H 1.09003 * 109.47032 * 60.00212 * 7 6 5 33 33 H 0.96999 * 119.99894 * 180.02562 * 11 10 8 34 34 H 1.08009 * 120.05649 * 0.29744 * 18 17 16 35 35 H 1.08001 * 119.66343 * 179.97438 * 19 18 17 36 36 H 1.08002 * 119.77372 * 180.02562 * 20 19 18 37 37 H 1.08000 * 120.15788 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2874 2.1414 -1.0956 5 6 2.1262 1.6859 -2.5231 6 7 0.7681 2.0000 -2.9869 7 6 0.5743 1.5698 -4.3780 8 6 -0.8267 1.9084 -4.8180 9 1 -1.5054 2.3941 -4.1325 10 6 -1.2424 1.5970 -6.0952 11 7 -0.4161 1.0050 -6.9297 12 14 -2.9794 2.0161 -6.6403 13 1 -3.1885 3.4830 -6.5425 14 1 -3.1752 1.5812 -8.0466 15 1 -3.9548 1.3176 -5.7653 16 7 2.7041 3.3189 -0.7316 17 6 2.7303 3.3949 0.6239 18 6 3.0865 4.4009 1.5260 19 6 3.0047 4.1703 2.8699 20 6 2.5697 2.9440 3.3524 21 6 2.2133 1.9369 2.4812 22 6 2.2915 2.1525 1.1120 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 2.8529 2.1993 -3.1526 29 1 2.2904 0.6099 -2.5819 30 1 0.5685 2.9834 -2.8817 31 1 1.2903 2.0827 -5.0201 32 1 0.7280 0.4930 -4.4501 33 1 -0.7085 0.7863 -7.8283 34 1 3.4218 5.3607 1.1612 35 1 3.2813 4.9503 3.5639 36 1 2.5101 2.7775 4.4179 37 1 1.8758 0.9843 2.8620 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037979092.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:20 Heat of formation + Delta-G solvation = 47.244779 kcal Electronic energy + Delta-G solvation = -18685.077132 eV Core-core repulsion = 15847.793899 eV Total energy + Delta-G solvation = -2837.283233 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.15673 -38.54212 -36.99331 -35.91224 -34.57751 -32.13086 -31.12405 -30.28691 -28.94597 -26.48255 -24.78137 -23.58754 -23.04388 -22.69032 -20.84193 -18.71140 -18.31062 -17.97631 -16.87143 -16.68448 -16.30002 -15.94147 -15.34490 -15.12677 -15.02185 -14.88991 -14.58123 -14.00688 -13.86409 -13.44773 -13.25698 -12.99583 -12.82026 -12.69049 -12.62623 -12.41224 -12.28649 -12.11351 -12.02364 -11.38465 -11.32810 -10.91385 -10.66454 -9.36537 -9.18983 -9.02459 -8.23033 -6.33524 0.00114 0.61749 1.41672 1.44294 1.52250 1.62675 1.77075 2.40061 2.94150 3.09621 3.10939 3.47652 3.68975 3.74598 4.07426 4.13888 4.16925 4.23360 4.32298 4.44700 4.53455 4.54208 4.62342 4.80388 4.88888 4.96248 5.03899 5.23062 5.25567 5.35273 5.52716 5.57725 5.60858 5.65509 5.96179 6.02292 6.16038 6.32029 6.52593 6.82696 6.92789 7.36659 8.88083 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.031748 B = 0.004234 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.729496 B = 6611.350901 C = 6824.223491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.106 3.894 3 N -0.474 5.474 4 C 0.288 3.712 5 C 0.138 3.862 6 N -0.673 5.673 7 C 0.211 3.789 8 C -0.535 4.535 9 H 0.060 0.940 10 C 0.007 3.993 11 N -0.930 5.930 12 Si 0.969 3.031 13 H -0.271 1.271 14 H -0.281 1.281 15 H -0.268 1.268 16 N -0.533 5.533 17 C 0.007 3.993 18 C -0.088 4.088 19 C -0.123 4.123 20 C -0.100 4.100 21 C -0.114 4.114 22 C 0.030 3.970 23 H 0.095 0.905 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.097 0.903 27 H 0.115 0.885 28 H 0.052 0.948 29 H 0.098 0.902 30 H 0.333 0.667 31 H -0.034 1.034 32 H 0.015 0.985 33 H 0.266 0.734 34 H 0.128 0.872 35 H 0.159 0.841 36 H 0.166 0.834 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.591 -1.045 21.088 21.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.015 4.015 3 N -0.163 5.163 4 C 0.022 3.978 5 C 0.007 3.993 6 N -0.304 5.304 7 C 0.084 3.916 8 C -0.574 4.574 9 H 0.078 0.922 10 C -0.192 4.192 11 N -0.570 5.570 12 Si 0.794 3.206 13 H -0.196 1.196 14 H -0.206 1.206 15 H -0.193 1.193 16 N -0.254 5.254 17 C -0.112 4.112 18 C -0.108 4.108 19 C -0.143 4.143 20 C -0.119 4.119 21 C -0.135 4.135 22 C -0.079 4.079 23 H 0.113 0.887 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.115 0.885 27 H 0.133 0.867 28 H 0.070 0.930 29 H 0.117 0.883 30 H 0.150 0.850 31 H -0.016 1.016 32 H 0.033 0.967 33 H 0.075 0.925 34 H 0.146 0.854 35 H 0.177 0.823 36 H 0.183 0.817 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 5.519 -1.208 20.627 21.387 hybrid contribution -0.400 0.258 -1.033 1.137 sum 5.119 -0.951 19.594 20.274 Atomic orbital electron populations 1.22109 0.93942 1.03895 1.02334 1.22024 0.95959 0.77950 1.05547 1.45502 1.52782 1.13891 1.04172 1.23430 0.96343 0.86896 0.91120 1.20314 0.92063 1.01422 0.85503 1.60647 1.22399 1.23318 1.24042 1.19247 0.95211 0.94758 0.82392 1.21419 0.98552 1.39500 0.97898 0.92161 1.25849 1.02057 0.94810 0.96461 1.70060 1.37526 1.42417 1.07024 0.85441 0.79201 0.78792 0.77199 1.19577 1.20649 1.19268 1.70348 1.23870 1.18805 1.12399 1.19601 1.05948 0.95599 0.90024 1.20279 1.00478 0.97411 0.92628 1.21018 1.00555 0.98765 0.93947 1.21337 0.97746 0.92054 1.00754 1.20334 1.03760 1.01812 0.87547 1.19319 1.05378 0.92649 0.90585 0.88675 0.92601 0.93139 0.88482 0.86699 0.93037 0.88340 0.85016 1.01622 0.96715 0.92524 0.85426 0.82302 0.81653 0.83747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.94 10.24 71.98 0.74 -3.20 16 2 C 0.11 2.38 6.65 86.38 0.57 2.95 16 3 N -0.47 -14.23 2.81 -505.58 -1.42 -15.65 16 4 C 0.29 10.34 7.37 137.92 1.02 11.36 16 5 C 0.14 5.10 5.97 85.56 0.51 5.61 16 6 N -0.67 -29.27 6.48 -521.96 -3.38 -32.65 16 7 C 0.21 11.05 5.44 85.56 0.47 11.52 16 8 C -0.54 -30.25 9.32 25.60 0.24 -30.02 16 9 H 0.06 3.35 7.81 -2.91 -0.02 3.33 16 10 C 0.01 0.39 5.46 84.65 0.46 0.86 16 11 N -0.93 -55.25 13.29 21.45 0.28 -54.97 16 12 Si 0.97 44.07 29.54 68.60 2.03 46.09 16 13 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 14 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 15 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 16 N -0.53 -20.69 11.27 -179.97 -2.03 -22.72 16 17 C 0.01 0.23 7.23 39.45 0.29 0.51 16 18 C -0.09 -2.36 10.05 22.25 0.22 -2.14 16 19 C -0.12 -2.33 9.96 22.02 0.22 -2.11 16 20 C -0.10 -1.69 10.03 22.31 0.22 -1.47 16 21 C -0.11 -2.41 10.05 22.32 0.22 -2.19 16 22 C 0.03 0.89 6.88 38.86 0.27 1.15 16 23 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.10 2.12 6.99 -2.39 -0.02 2.10 16 27 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.10 3.28 7.01 -2.39 -0.02 3.27 16 30 H 0.33 15.04 8.71 -89.70 -0.78 14.25 16 31 H -0.03 -1.92 8.14 -2.39 -0.02 -1.94 16 32 H 0.01 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 34 H 0.13 3.17 8.06 -2.91 -0.02 3.14 16 35 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 36 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 37 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -69.32 317.41 1.21 -68.11 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 0.28 Total: 18.94 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: 5.45 Total: -7.15 kcal Atomic # 7 Polarization: -119.44 SS G_CDS: -6.54 Total: -125.98 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -69.32 1.21 -68.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037979092.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.352 kcal (2) G-P(sol) polarization free energy of solvation -69.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds