Wall clock time and date at job start Mon Mar 30 2020 07:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99775 * 2 1 4 4 H 1.48495 * 109.47596 * 269.99915 * 3 2 1 5 5 H 1.48498 * 109.47273 * 30.00288 * 3 2 1 6 6 H 1.48508 * 109.46877 * 149.99929 * 3 2 1 7 7 C 1.37874 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99734 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00157 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47067 * 180.02562 * 9 7 2 11 11 C 1.46498 * 119.99857 * 269.99852 * 10 9 7 12 12 C 1.53001 * 109.46962 * 274.37460 * 11 10 9 13 13 C 1.54271 * 110.02914 * 291.57355 * 12 11 10 14 14 C 1.54965 * 104.16273 * 217.13651 * 13 12 11 15 15 C 1.54896 * 102.77372 * 37.88909 * 14 13 12 16 16 C 1.53875 * 110.03269 * 174.36033 * 12 11 10 17 17 C 1.39675 * 119.99831 * 89.99870 * 10 9 7 18 18 C 1.38916 * 120.06955 * 184.58015 * 17 10 9 19 19 C 1.38101 * 119.92261 * 180.27735 * 18 17 10 20 20 C 1.38286 * 120.07737 * 359.97438 * 19 18 17 21 21 C 1.38287 * 120.14651 * 0.02562 * 20 19 18 22 22 C 1.38106 * 120.07666 * 359.97438 * 21 20 19 23 23 H 0.96995 * 120.00378 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47300 * 59.99787 * 9 7 2 25 25 H 1.09004 * 109.46381 * 299.99697 * 9 7 2 26 26 H 1.09004 * 109.47151 * 34.36669 * 11 10 9 27 27 H 1.08991 * 109.47030 * 154.37540 * 11 10 9 28 28 H 1.09003 * 110.01983 * 52.96139 * 12 11 10 29 29 H 1.08996 * 110.48577 * 335.78590 * 13 12 11 30 30 H 1.09008 * 110.48751 * 98.42872 * 13 12 11 31 31 H 1.09005 * 110.71947 * 279.57856 * 14 13 12 32 32 H 1.08994 * 110.92214 * 156.29618 * 14 13 12 33 33 H 1.08997 * 110.48383 * 203.40866 * 15 14 13 34 34 H 1.08992 * 110.59849 * 80.81734 * 15 14 13 35 35 H 1.09000 * 110.03043 * 238.56348 * 16 12 11 36 36 H 1.08996 * 110.03011 * 359.97438 * 16 12 11 37 37 H 1.07996 * 120.03802 * 0.24806 * 18 17 10 38 38 H 1.07998 * 119.96266 * 180.02562 * 19 18 17 39 39 H 1.07993 * 119.92595 * 179.97438 * 20 19 18 40 40 H 1.08008 * 119.96149 * 179.97438 * 21 20 19 41 41 H 1.08000 * 120.03378 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 7 2.2032 -3.6127 -0.0015 11 6 2.6801 -4.1688 -1.2701 12 6 1.6911 -5.2247 -1.7679 13 6 1.7214 -6.4565 -0.8396 14 6 1.5479 -7.6598 -1.8006 15 6 2.3725 -7.2304 -3.0395 16 6 2.1045 -5.7165 -3.1662 17 6 2.6561 -4.1440 1.2083 18 6 3.6296 -5.1349 1.2122 19 6 4.0711 -5.6621 2.4099 20 6 3.5456 -5.2044 3.6043 21 6 2.5763 -4.2181 3.6039 22 6 2.1303 -3.6865 2.4098 23 1 -0.4850 0.8400 0.0004 24 1 0.6247 -2.5564 -0.8919 25 1 0.6241 -2.5574 0.8881 26 1 2.7622 -3.3712 -2.0085 27 1 3.6573 -4.6280 -1.1209 28 1 0.6848 -4.8071 -1.8013 29 1 2.6772 -6.5186 -0.3194 30 1 0.8991 -6.4162 -0.1252 31 1 0.4987 -7.7956 -2.0630 32 1 1.9558 -8.5703 -1.3617 33 1 2.0251 -7.7550 -3.9295 34 1 3.4339 -7.4176 -2.8774 35 1 1.2985 -5.5383 -3.8780 36 1 3.0094 -5.2026 -3.4902 37 1 4.0405 -5.4928 0.2798 38 1 4.8283 -6.4322 2.4137 39 1 3.8923 -5.6187 4.5394 40 1 2.1676 -3.8630 4.5385 41 1 1.3730 -2.9165 2.4103 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042011268.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:34 Heat of formation + Delta-G solvation = 13.906817 kcal Electronic energy + Delta-G solvation = -19696.147519 eV Core-core repulsion = 16960.958987 eV Total energy + Delta-G solvation = -2735.188532 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.25764 -37.73250 -35.29697 -32.71201 -30.63398 -29.98513 -28.74488 -28.39929 -26.52243 -24.16212 -22.77830 -21.51428 -20.44349 -19.94352 -19.07897 -17.03546 -16.44270 -15.62025 -15.06989 -14.87960 -14.56280 -14.19636 -13.92296 -13.36415 -13.19395 -12.89852 -12.79806 -12.45620 -12.07407 -11.57250 -11.29074 -11.06383 -11.01965 -10.94158 -10.81411 -10.78278 -10.67553 -10.56773 -10.37854 -10.23076 -10.11414 -9.75183 -9.65865 -8.85602 -8.49220 -8.23159 -6.44955 -5.99985 -4.15915 2.12328 2.35772 3.26384 3.33328 3.37939 4.11079 4.41048 4.60116 4.82497 4.87502 4.97327 5.22718 5.41842 5.54572 5.58725 5.63407 5.67666 5.78544 5.80874 5.85152 5.88956 6.00933 6.05001 6.09955 6.20806 6.28272 6.33410 6.36654 6.44680 6.50721 6.55785 6.67880 6.74900 7.01269 7.10734 7.20681 7.29528 7.39971 7.64093 7.82545 8.18077 8.31095 8.54011 8.93446 9.50850 10.96732 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015076 B = 0.007338 C = 0.005409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.846322 B = 3814.953977 C = 5175.311523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.062 3.938 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.251 3.749 10 N -0.608 5.608 11 C 0.133 3.867 12 C -0.110 4.110 13 C -0.119 4.119 14 C -0.126 4.126 15 C -0.123 4.123 16 C -0.118 4.118 17 C 0.245 3.755 18 C -0.220 4.220 19 C -0.079 4.079 20 C -0.206 4.206 21 C -0.077 4.077 22 C -0.191 4.191 23 H 0.263 0.737 24 H 0.029 0.971 25 H 0.035 0.965 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.115 0.885 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.380 -12.776 -1.580 13.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.140 4.140 3 Si 0.722 3.278 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.569 4.569 8 H 0.077 0.923 9 C 0.131 3.869 10 N -0.313 5.313 11 C 0.008 3.992 12 C -0.130 4.130 13 C -0.157 4.157 14 C -0.163 4.163 15 C -0.160 4.160 16 C -0.156 4.156 17 C 0.138 3.862 18 C -0.243 4.243 19 C -0.098 4.098 20 C -0.227 4.227 21 C -0.095 4.095 22 C -0.213 4.213 23 H 0.073 0.927 24 H 0.047 0.953 25 H 0.053 0.947 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.133 0.867 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.128 0.872 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.125 -12.524 -1.792 13.307 hybrid contribution 0.382 1.107 -0.040 1.172 sum 4.507 -11.417 -1.832 12.410 Atomic orbital electron populations 1.69925 1.05975 1.27069 1.50477 1.24949 0.94836 0.99191 0.95063 0.86543 0.79930 0.83158 0.78121 1.20653 1.21112 1.19829 1.21595 0.93605 0.90748 1.50953 0.92310 1.19235 0.87378 0.82359 0.97894 1.47118 1.47574 1.35435 1.01183 1.21411 0.95805 0.95386 0.86577 1.22271 1.00708 0.96027 0.93980 1.22565 1.02604 0.93285 0.97215 1.22522 0.99694 0.98040 0.96075 1.22337 0.99868 0.95979 0.97836 1.22144 1.01179 0.95372 0.96944 1.17889 0.90910 0.90635 0.86772 1.20608 1.02761 1.03071 0.97889 1.20664 0.98322 0.98462 0.92352 1.20632 1.02576 1.02389 0.97102 1.20807 0.96118 0.95603 0.97019 1.20891 1.04826 1.04609 0.91014 0.92696 0.95294 0.94748 0.91039 0.91754 0.90899 0.90582 0.92157 0.92046 0.92149 0.92297 0.91937 0.92053 0.91792 0.86705 0.87549 0.87775 0.87245 0.85321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.69 13.29 55.43 0.74 -24.95 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.53 -14.45 9.39 -34.44 -0.32 -14.78 16 8 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 9 C 0.25 6.22 5.04 -5.19 -0.03 6.20 16 10 N -0.61 -12.66 2.50 -173.12 -0.43 -13.10 16 11 C 0.13 2.32 4.65 -4.04 -0.02 2.30 16 12 C -0.11 -1.68 3.15 -89.50 -0.28 -1.96 16 13 C -0.12 -1.71 5.58 -25.03 -0.14 -1.85 16 14 C -0.13 -1.49 6.91 -24.69 -0.17 -1.66 16 15 C -0.12 -1.36 6.83 -25.07 -0.17 -1.53 16 16 C -0.12 -1.49 6.46 -25.61 -0.17 -1.66 16 17 C 0.24 4.90 6.11 -83.79 -0.51 4.39 16 18 C -0.22 -3.83 7.46 -39.38 -0.29 -4.12 16 19 C -0.08 -1.26 10.04 -39.61 -0.40 -1.66 16 20 C -0.21 -3.33 10.04 -39.55 -0.40 -3.73 16 21 C -0.08 -1.35 10.04 -39.61 -0.40 -1.75 16 22 C -0.19 -3.90 9.24 -39.38 -0.36 -4.26 16 23 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 24 H 0.03 0.76 8.07 -51.93 -0.42 0.34 16 25 H 0.03 0.91 6.02 -51.93 -0.31 0.60 16 26 H 0.07 1.32 8.10 -51.93 -0.42 0.90 16 27 H 0.06 1.03 5.74 -51.93 -0.30 0.74 16 28 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.08 1.11 4.67 -51.93 -0.24 0.86 16 30 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.78 7.67 -51.93 -0.40 0.38 16 37 H 0.12 1.82 4.81 -52.49 -0.25 1.57 16 38 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 39 H 0.10 1.42 8.06 -52.49 -0.42 1.00 16 40 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 41 H 0.13 2.87 6.05 -52.49 -0.32 2.56 16 LS Contribution 321.46 15.07 4.84 4.84 Total: -1.00 -28.08 321.46 -10.06 -38.14 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -6.43 Total: 3.15 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: -3.76 Total: -24.46 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.30 Total: -38.05 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.08 -10.06 -38.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042011268.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.050 kcal (2) G-P(sol) polarization free energy of solvation -28.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds