Wall clock time and date at job start Mon Mar 30 2020 07:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99775 * 2 1 4 4 H 1.48495 * 109.47596 * 269.99915 * 3 2 1 5 5 H 1.48498 * 109.47273 * 30.00288 * 3 2 1 6 6 H 1.48508 * 109.46877 * 149.99929 * 3 2 1 7 7 C 1.37874 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99734 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00157 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47067 * 180.02562 * 9 7 2 11 11 C 1.46498 * 119.99857 * 269.99852 * 10 9 7 12 12 C 1.53001 * 109.46962 * 274.37460 * 11 10 9 13 13 C 1.54271 * 110.02914 * 291.57355 * 12 11 10 14 14 C 1.54965 * 104.16273 * 217.13651 * 13 12 11 15 15 C 1.54896 * 102.77372 * 37.88909 * 14 13 12 16 16 C 1.53875 * 110.03269 * 174.36033 * 12 11 10 17 17 C 1.39675 * 119.99831 * 89.99870 * 10 9 7 18 18 C 1.38916 * 120.06955 * 184.58015 * 17 10 9 19 19 C 1.38101 * 119.92261 * 180.27735 * 18 17 10 20 20 C 1.38286 * 120.07737 * 359.97438 * 19 18 17 21 21 C 1.38287 * 120.14651 * 0.02562 * 20 19 18 22 22 C 1.38106 * 120.07666 * 359.97438 * 21 20 19 23 23 H 0.96995 * 120.00378 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47300 * 59.99787 * 9 7 2 25 25 H 1.09004 * 109.46381 * 299.99697 * 9 7 2 26 26 H 1.09004 * 109.47151 * 34.36669 * 11 10 9 27 27 H 1.08991 * 109.47030 * 154.37540 * 11 10 9 28 28 H 1.09003 * 110.01983 * 52.96139 * 12 11 10 29 29 H 1.08996 * 110.48577 * 335.78590 * 13 12 11 30 30 H 1.09008 * 110.48751 * 98.42872 * 13 12 11 31 31 H 1.09005 * 110.71947 * 279.57856 * 14 13 12 32 32 H 1.08994 * 110.92214 * 156.29618 * 14 13 12 33 33 H 1.08997 * 110.48383 * 203.40866 * 15 14 13 34 34 H 1.08992 * 110.59849 * 80.81734 * 15 14 13 35 35 H 1.09000 * 110.03043 * 238.56348 * 16 12 11 36 36 H 1.08996 * 110.03011 * 359.97438 * 16 12 11 37 37 H 1.07996 * 120.03802 * 0.24806 * 18 17 10 38 38 H 1.07998 * 119.96266 * 180.02562 * 19 18 17 39 39 H 1.07993 * 119.92595 * 179.97438 * 20 19 18 40 40 H 1.08008 * 119.96149 * 179.97438 * 21 20 19 41 41 H 1.08000 * 120.03378 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 7 2.2032 -3.6127 -0.0015 11 6 2.6801 -4.1688 -1.2701 12 6 1.6911 -5.2247 -1.7679 13 6 1.7214 -6.4565 -0.8396 14 6 1.5479 -7.6598 -1.8006 15 6 2.3725 -7.2304 -3.0395 16 6 2.1045 -5.7165 -3.1662 17 6 2.6561 -4.1440 1.2083 18 6 3.6296 -5.1349 1.2122 19 6 4.0711 -5.6621 2.4099 20 6 3.5456 -5.2044 3.6043 21 6 2.5763 -4.2181 3.6039 22 6 2.1303 -3.6865 2.4098 23 1 -0.4850 0.8400 0.0004 24 1 0.6247 -2.5564 -0.8919 25 1 0.6241 -2.5574 0.8881 26 1 2.7622 -3.3712 -2.0085 27 1 3.6573 -4.6280 -1.1209 28 1 0.6848 -4.8071 -1.8013 29 1 2.6772 -6.5186 -0.3194 30 1 0.8991 -6.4162 -0.1252 31 1 0.4987 -7.7956 -2.0630 32 1 1.9558 -8.5703 -1.3617 33 1 2.0251 -7.7550 -3.9295 34 1 3.4339 -7.4176 -2.8774 35 1 1.2985 -5.5383 -3.8780 36 1 3.0094 -5.2026 -3.4902 37 1 4.0405 -5.4928 0.2798 38 1 4.8283 -6.4322 2.4137 39 1 3.8923 -5.6187 4.5394 40 1 2.1676 -3.8630 4.5385 41 1 1.3730 -2.9165 2.4103 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042011268.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:34 Heat of formation + Delta-G solvation = 1.400678 kcal Electronic energy + Delta-G solvation = -19696.689825 eV Core-core repulsion = 16960.958987 eV Total energy + Delta-G solvation = -2735.730839 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.66229 -38.93349 -36.83377 -34.74051 -32.04542 -31.30408 -30.40470 -29.45857 -28.17960 -25.75177 -24.44920 -22.93923 -21.56873 -21.26440 -20.36854 -18.58428 -18.47874 -17.00302 -16.65633 -16.12052 -15.92100 -15.84447 -15.26709 -14.84751 -14.48869 -14.42733 -14.16260 -13.98383 -13.58830 -13.18732 -13.06277 -12.69571 -12.57297 -12.38341 -12.18449 -12.06384 -11.91688 -11.86058 -11.81447 -11.62353 -11.49175 -11.31191 -11.10861 -10.64588 -10.44819 -9.63092 -8.37093 -7.78747 -6.38151 0.71621 0.95199 1.35176 1.36325 1.47459 2.32952 2.60655 3.05392 3.18920 3.74328 3.81768 3.85934 4.12527 4.26439 4.34195 4.47943 4.50399 4.57782 4.64470 4.71201 4.78307 4.82896 4.86260 4.90515 4.97734 5.00872 5.11481 5.13857 5.15703 5.20853 5.30635 5.33730 5.43855 5.50590 5.54503 5.60577 5.71747 5.79000 5.90946 6.07814 6.25218 6.52411 6.84231 6.98801 7.34039 8.82651 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015076 B = 0.007338 C = 0.005409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.846322 B = 3814.953977 C = 5175.311523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.012 3.988 3 Si 0.961 3.039 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.272 1.272 7 C -0.541 4.541 8 H 0.049 0.951 9 C 0.272 3.728 10 N -0.619 5.619 11 C 0.133 3.867 12 C -0.107 4.107 13 C -0.115 4.115 14 C -0.121 4.121 15 C -0.115 4.115 16 C -0.116 4.116 17 C 0.219 3.781 18 C -0.216 4.216 19 C -0.073 4.073 20 C -0.198 4.198 21 C -0.081 4.081 22 C -0.226 4.226 23 H 0.267 0.733 24 H 0.004 0.996 25 H 0.008 0.992 26 H 0.053 0.947 27 H 0.085 0.915 28 H 0.040 0.960 29 H 0.079 0.921 30 H 0.035 0.965 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.133 0.867 38 H 0.148 0.852 39 H 0.139 0.861 40 H 0.126 0.874 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.914 -14.667 -1.461 16.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.187 4.187 3 Si 0.786 3.214 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.197 1.197 7 C -0.580 4.580 8 H 0.067 0.933 9 C 0.150 3.850 10 N -0.326 5.326 11 C 0.010 3.990 12 C -0.127 4.127 13 C -0.153 4.153 14 C -0.158 4.158 15 C -0.152 4.152 16 C -0.154 4.154 17 C 0.115 3.885 18 C -0.239 4.239 19 C -0.091 4.091 20 C -0.218 4.218 21 C -0.100 4.100 22 C -0.249 4.249 23 H 0.076 0.924 24 H 0.022 0.978 25 H 0.026 0.974 26 H 0.071 0.929 27 H 0.103 0.897 28 H 0.058 0.942 29 H 0.097 0.903 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.150 0.850 38 H 0.165 0.835 39 H 0.157 0.843 40 H 0.144 0.856 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.676 -14.447 -1.667 16.002 hybrid contribution -0.401 1.636 0.023 1.685 sum 6.275 -12.810 -1.644 14.359 Atomic orbital electron populations 1.70040 1.07429 1.28075 1.51177 1.25783 0.95674 1.02697 0.94537 0.85504 0.78501 0.78839 0.78536 1.19559 1.20397 1.19666 1.21806 0.93177 0.92120 1.50919 0.93278 1.18660 0.87585 0.83474 0.95248 1.46933 1.47644 1.35144 1.02858 1.21541 0.97256 0.95340 0.84840 1.22191 0.98327 0.95877 0.96276 1.22489 1.01676 0.94020 0.97068 1.22508 1.00122 0.97405 0.95771 1.22322 1.00566 0.94244 0.98088 1.22137 1.01481 0.96993 0.94798 1.18156 0.92297 0.92040 0.86023 1.20833 1.01553 1.01857 0.99613 1.21151 0.98219 0.98399 0.91341 1.21064 1.00960 1.00885 0.98896 1.21056 0.96495 0.95909 0.96518 1.20832 1.05654 1.05429 0.92958 0.92434 0.97832 0.97440 0.92868 0.89696 0.94162 0.90289 0.94635 0.92155 0.90316 0.90483 0.90599 0.91976 0.91070 0.84981 0.83475 0.84270 0.85574 0.89005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.40 13.29 21.45 0.28 -55.11 16 2 C 0.01 0.69 5.46 84.65 0.46 1.16 16 3 Si 0.96 44.77 29.54 68.60 2.03 46.79 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.54 -31.01 9.39 25.60 0.24 -30.76 16 8 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 9 C 0.27 14.58 5.04 85.63 0.43 15.01 16 10 N -0.62 -27.21 2.50 -701.62 -1.75 -28.97 16 11 C 0.13 4.80 4.65 86.38 0.40 5.20 16 12 C -0.11 -3.34 3.15 -10.07 -0.03 -3.38 16 13 C -0.12 -3.25 5.58 31.70 0.18 -3.07 16 14 C -0.12 -2.60 6.91 31.91 0.22 -2.38 16 15 C -0.11 -2.21 6.83 31.67 0.22 -1.99 16 16 C -0.12 -2.80 6.46 31.32 0.20 -2.60 16 17 C 0.22 9.01 6.11 38.21 0.23 9.25 16 18 C -0.22 -7.11 7.46 22.40 0.17 -6.94 16 19 C -0.07 -2.04 10.04 22.25 0.22 -1.81 16 20 C -0.20 -5.73 10.04 22.29 0.22 -5.51 16 21 C -0.08 -2.81 10.04 22.25 0.22 -2.59 16 22 C -0.23 -9.67 9.24 22.40 0.21 -9.46 16 23 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 24 H 0.00 0.21 8.07 -2.39 -0.02 0.19 16 25 H 0.01 0.45 6.02 -2.39 -0.01 0.43 16 26 H 0.05 2.06 8.10 -2.39 -0.02 2.04 16 27 H 0.08 2.66 5.74 -2.39 -0.01 2.64 16 28 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.08 2.16 4.67 -2.39 -0.01 2.15 16 30 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.07 1.62 7.67 -2.39 -0.02 1.60 16 37 H 0.13 3.82 4.81 -2.91 -0.01 3.81 16 38 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 39 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 40 H 0.13 3.81 8.06 -2.91 -0.02 3.78 16 41 H 0.09 4.52 6.05 -2.91 -0.02 4.51 16 Total: -1.00 -63.86 321.46 5.15 -58.71 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.99 Total: 18.46 kcal Atomic # 6 Polarization: -43.48 SS G_CDS: 3.60 Total: -39.89 kcal Atomic # 7 Polarization: -82.61 SS G_CDS: -1.47 Total: -84.08 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -63.86 5.15 -58.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042011268.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.113 kcal (2) G-P(sol) polarization free energy of solvation -63.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds