Wall clock time and date at job start Mon Mar 30 2020 07:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46905 * 109.47185 * 2 1 4 4 C 1.46900 * 110.99999 * 199.52508 * 3 2 1 5 5 C 1.50706 * 109.47473 * 66.04393 * 4 3 2 6 6 H 1.08002 * 119.99275 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00147 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00043 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99890 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47090 * 89.99864 * 9 7 5 11 11 H 1.48499 * 109.47030 * 210.00033 * 9 7 5 12 12 H 1.48498 * 109.47189 * 329.99941 * 9 7 5 13 13 C 1.38401 * 111.00113 * 75.56873 * 3 2 1 14 14 N 1.32383 * 119.82505 * 58.96850 * 13 3 2 15 15 C 1.31877 * 121.78331 * 179.97438 * 14 13 3 16 16 C 1.50694 * 119.39199 * 179.72206 * 15 14 13 17 17 C 1.38340 * 121.21653 * 0.02562 * 15 14 13 18 18 C 1.38373 * 119.50931 * 359.97438 * 17 15 14 19 19 C 1.50700 * 120.81891 * 179.97438 * 18 17 15 20 20 C 1.39962 * 118.35998 * 0.02562 * 18 17 15 21 21 C 1.43197 * 120.60902 * 179.97438 * 20 18 17 22 22 N 4.52651 * 69.44618 * 351.62218 * 2 1 3 23 23 H 1.09000 * 109.47075 * 184.86489 * 1 2 3 24 24 H 1.09000 * 109.47224 * 304.86518 * 1 2 3 25 25 H 1.08999 * 109.46861 * 64.86353 * 1 2 3 26 26 H 1.09001 * 109.47440 * 240.00014 * 2 1 3 27 27 H 1.08996 * 109.47268 * 119.99913 * 2 1 3 28 28 H 1.08997 * 109.47090 * 186.04841 * 4 3 2 29 29 H 1.09000 * 109.46869 * 306.04372 * 4 3 2 30 30 H 0.97000 * 120.00120 * 180.02562 * 8 7 5 31 31 H 1.08997 * 109.47636 * 90.00162 * 16 15 14 32 32 H 1.09008 * 109.47285 * 210.00283 * 16 15 14 33 33 H 1.09002 * 109.47421 * 329.99729 * 16 15 14 34 34 H 1.08000 * 120.24410 * 180.02562 * 17 15 14 35 35 H 1.09002 * 109.46852 * 270.01261 * 19 18 17 36 36 H 1.08997 * 109.47341 * 30.01578 * 19 18 17 37 37 H 1.08996 * 109.46917 * 150.02075 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4138 1.4505 -0.4584 5 6 3.4857 1.0448 -1.9080 6 1 2.5857 0.7658 -2.4358 7 6 4.7004 1.0288 -2.5600 8 7 5.7963 1.3681 -1.9171 9 14 4.7895 0.5253 -4.3566 10 1 4.6250 1.7253 -5.2158 11 1 6.1072 -0.1025 -4.6300 12 1 3.7070 -0.4474 -4.6524 13 6 1.8814 1.9600 1.2513 14 7 2.4801 1.4124 2.2973 15 6 2.3749 1.9280 3.5066 16 6 3.0742 1.2565 4.6603 17 6 1.6294 3.0704 3.7365 18 6 0.9816 3.6857 2.6799 19 6 0.1612 4.9310 2.8970 20 6 1.1062 3.1222 1.4048 21 6 0.4557 3.7190 0.2772 22 7 -0.0592 4.1931 -0.6175 23 1 -0.3633 -1.0240 0.0872 24 1 -0.3634 0.5875 0.8432 25 1 -0.3633 0.4365 -0.9303 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.7853 2.4691 -0.3473 29 1 4.0248 0.7738 0.1390 30 1 6.6509 1.3572 -2.3759 31 1 4.0777 1.6684 4.7665 32 1 2.5112 1.4304 5.5774 33 1 3.1394 0.1849 4.4717 34 1 1.5543 3.4795 4.7332 35 1 -0.8683 4.6531 3.1228 36 1 0.5756 5.4984 3.7302 37 1 0.1828 5.5422 1.9947 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042451208.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:24 Heat of formation + Delta-G solvation = 63.223850 kcal Electronic energy + Delta-G solvation = -19204.084716 eV Core-core repulsion = 16367.494388 eV Total energy + Delta-G solvation = -2836.590328 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.55195 -36.97378 -36.21935 -33.86963 -32.80609 -31.77933 -29.89479 -28.46293 -27.51499 -26.52778 -23.02589 -22.52667 -21.80794 -19.93658 -18.56646 -16.88125 -16.50066 -15.57250 -15.18213 -14.50110 -14.31750 -13.86822 -13.60779 -13.45955 -13.25498 -12.86322 -12.84355 -12.63304 -12.43034 -12.25268 -12.15008 -12.14931 -11.82900 -11.70267 -11.30054 -11.05742 -10.77574 -10.59090 -10.32601 -10.05865 -9.58202 -9.33228 -9.19330 -8.50799 -8.48814 -7.70002 -6.06336 -4.08426 0.83698 1.31213 3.16515 3.31824 3.32279 3.37885 3.41484 4.06274 4.12317 4.25799 4.45895 4.56947 4.64488 5.12441 5.17475 5.29813 5.33169 5.41686 5.46141 5.60515 5.63217 5.71888 5.80570 5.90266 6.01260 6.05726 6.07980 6.19366 6.33781 6.57629 6.66724 6.74614 7.17459 7.30720 7.73790 7.87775 7.95024 8.05551 8.20752 8.44197 8.97373 9.55312 11.04455 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.020019 B = 0.006447 C = 0.005866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.334776 B = 4341.785304 C = 4772.253004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.059 3.941 3 N -0.499 5.499 4 C 0.205 3.795 5 C -0.512 4.512 6 H 0.066 0.934 7 C 0.059 3.941 8 N -0.895 5.895 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.272 1.272 13 C 0.382 3.618 14 N -0.511 5.511 15 C 0.168 3.832 16 C -0.107 4.107 17 C -0.198 4.198 18 C 0.007 3.993 19 C -0.120 4.120 20 C -0.080 4.080 21 C 0.283 3.717 22 N -0.422 5.422 23 H 0.053 0.947 24 H 0.040 0.960 25 H 0.058 0.942 26 H 0.095 0.905 27 H 0.043 0.957 28 H 0.028 0.972 29 H 0.013 0.987 30 H 0.262 0.738 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.139 0.861 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.446 1.720 14.678 17.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.067 4.067 3 N -0.223 5.223 4 C 0.082 3.918 5 C -0.551 4.551 6 H 0.084 0.916 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.197 1.197 13 C 0.151 3.849 14 N -0.224 5.224 15 C 0.028 3.972 16 C -0.164 4.164 17 C -0.218 4.218 18 C -0.003 4.003 19 C -0.177 4.177 20 C -0.087 4.087 21 C -0.033 4.033 22 N -0.098 5.098 23 H 0.072 0.928 24 H 0.059 0.941 25 H 0.077 0.923 26 H 0.114 0.886 27 H 0.062 0.938 28 H 0.046 0.954 29 H 0.031 0.969 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.157 0.843 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.819 1.970 12.776 15.648 hybrid contribution 0.516 -0.093 -0.067 0.528 sum -8.303 1.877 12.709 15.296 Atomic orbital electron populations 1.21799 0.96462 1.00453 1.01586 1.22065 0.94059 0.87883 1.02698 1.60359 1.27056 1.19403 1.15479 1.19783 0.78727 0.97470 0.95787 1.21093 0.93555 1.45402 0.95013 0.91608 1.24958 0.95485 0.95380 0.98501 1.69964 0.98499 1.48244 1.36680 0.86464 0.77317 0.78775 0.84689 1.20601 1.21214 1.19730 1.20249 0.86397 0.88649 0.89612 1.67931 1.21300 1.33862 0.99351 1.21363 0.92007 0.91265 0.92597 1.20783 1.00280 1.01618 0.93714 1.21592 1.02247 0.98386 0.99550 1.20224 0.93983 0.95162 0.90916 1.20890 0.99403 0.93973 1.03404 1.16686 1.04220 0.98656 0.89146 1.24881 0.93076 0.92841 0.92485 1.81124 1.10223 1.09674 1.08757 0.92788 0.94072 0.92304 0.88641 0.93816 0.95428 0.96932 0.92798 0.90010 0.90696 0.90255 0.84290 0.89999 0.90253 0.90998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 10.07 37.16 0.37 -2.06 16 2 C 0.06 1.19 5.49 -3.82 -0.02 1.16 16 3 N -0.50 -11.10 3.79 -174.29 -0.66 -11.76 16 4 C 0.20 5.43 4.52 -4.97 -0.02 5.41 16 5 C -0.51 -14.46 8.24 -34.44 -0.28 -14.74 16 6 H 0.07 1.84 7.31 -52.49 -0.38 1.46 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -26.66 13.29 55.43 0.74 -25.93 16 9 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.38 7.49 4.55 -155.08 -0.71 6.79 16 14 N -0.51 -9.31 9.32 -8.41 -0.08 -9.38 16 15 C 0.17 2.34 6.78 -82.54 -0.56 1.78 16 16 C -0.11 -1.08 10.16 36.00 0.37 -0.71 16 17 C -0.20 -2.31 9.41 -39.49 -0.37 -2.69 16 18 C 0.01 0.10 5.95 -103.93 -0.62 -0.52 16 19 C -0.12 -1.17 9.68 36.01 0.35 -0.83 16 20 C -0.08 -1.38 5.77 -106.46 -0.61 -1.99 16 21 C 0.28 5.33 13.45 -22.47 -0.30 5.03 16 22 N -0.42 -8.54 18.54 41.84 0.78 -7.77 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.04 0.67 7.60 -51.93 -0.39 0.28 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.10 2.04 6.58 -51.93 -0.34 1.70 16 27 H 0.04 0.85 7.40 -51.93 -0.38 0.47 16 28 H 0.03 0.80 8.05 -51.93 -0.42 0.38 16 29 H 0.01 0.36 8.12 -51.93 -0.42 -0.06 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.53 8.07 -51.92 -0.42 0.11 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 37 H 0.07 0.79 7.19 -51.93 -0.37 0.42 16 LS Contribution 320.80 15.07 4.83 4.83 Total: -1.00 -32.08 320.80 -7.15 -39.23 By element: Atomic # 1 Polarization: 0.94 SS G_CDS: -5.23 Total: -4.29 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -2.51 Total: -1.79 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: 0.77 Total: -54.84 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.08 -7.15 -39.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042451208.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.450 kcal (2) G-P(sol) polarization free energy of solvation -32.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds