Wall clock time and date at job start Mon Mar 30 2020 07:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46905 * 109.47185 * 2 1 4 4 C 1.46900 * 110.99999 * 199.52508 * 3 2 1 5 5 C 1.50706 * 109.47473 * 66.04393 * 4 3 2 6 6 H 1.08002 * 119.99275 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00147 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00043 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99890 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47090 * 89.99864 * 9 7 5 11 11 H 1.48499 * 109.47030 * 210.00033 * 9 7 5 12 12 H 1.48498 * 109.47189 * 329.99941 * 9 7 5 13 13 C 1.38401 * 111.00113 * 75.56873 * 3 2 1 14 14 N 1.32383 * 119.82505 * 58.96850 * 13 3 2 15 15 C 1.31877 * 121.78331 * 179.97438 * 14 13 3 16 16 C 1.50694 * 119.39199 * 179.72206 * 15 14 13 17 17 C 1.38340 * 121.21653 * 0.02562 * 15 14 13 18 18 C 1.38373 * 119.50931 * 359.97438 * 17 15 14 19 19 C 1.50700 * 120.81891 * 179.97438 * 18 17 15 20 20 C 1.39962 * 118.35998 * 0.02562 * 18 17 15 21 21 C 1.43197 * 120.60902 * 179.97438 * 20 18 17 22 22 N 4.52651 * 69.44618 * 351.62218 * 2 1 3 23 23 H 1.09000 * 109.47075 * 184.86489 * 1 2 3 24 24 H 1.09000 * 109.47224 * 304.86518 * 1 2 3 25 25 H 1.08999 * 109.46861 * 64.86353 * 1 2 3 26 26 H 1.09001 * 109.47440 * 240.00014 * 2 1 3 27 27 H 1.08996 * 109.47268 * 119.99913 * 2 1 3 28 28 H 1.08997 * 109.47090 * 186.04841 * 4 3 2 29 29 H 1.09000 * 109.46869 * 306.04372 * 4 3 2 30 30 H 0.97000 * 120.00120 * 180.02562 * 8 7 5 31 31 H 1.08997 * 109.47636 * 90.00162 * 16 15 14 32 32 H 1.09008 * 109.47285 * 210.00283 * 16 15 14 33 33 H 1.09002 * 109.47421 * 329.99729 * 16 15 14 34 34 H 1.08000 * 120.24410 * 180.02562 * 17 15 14 35 35 H 1.09002 * 109.46852 * 270.01261 * 19 18 17 36 36 H 1.08997 * 109.47341 * 30.01578 * 19 18 17 37 37 H 1.08996 * 109.46917 * 150.02075 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4138 1.4505 -0.4584 5 6 3.4857 1.0448 -1.9080 6 1 2.5857 0.7658 -2.4358 7 6 4.7004 1.0288 -2.5600 8 7 5.7963 1.3681 -1.9171 9 14 4.7895 0.5253 -4.3566 10 1 4.6250 1.7253 -5.2158 11 1 6.1072 -0.1025 -4.6300 12 1 3.7070 -0.4474 -4.6524 13 6 1.8814 1.9600 1.2513 14 7 2.4801 1.4124 2.2973 15 6 2.3749 1.9280 3.5066 16 6 3.0742 1.2565 4.6603 17 6 1.6294 3.0704 3.7365 18 6 0.9816 3.6857 2.6799 19 6 0.1612 4.9310 2.8970 20 6 1.1062 3.1222 1.4048 21 6 0.4557 3.7190 0.2772 22 7 -0.0592 4.1931 -0.6175 23 1 -0.3633 -1.0240 0.0872 24 1 -0.3634 0.5875 0.8432 25 1 -0.3633 0.4365 -0.9303 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.7853 2.4691 -0.3473 29 1 4.0248 0.7738 0.1390 30 1 6.6509 1.3572 -2.3759 31 1 4.0777 1.6684 4.7665 32 1 2.5112 1.4304 5.5774 33 1 3.1394 0.1849 4.4717 34 1 1.5543 3.4795 4.7332 35 1 -0.8683 4.6531 3.1228 36 1 0.5756 5.4984 3.7302 37 1 0.1828 5.5422 1.9947 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042451208.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:24 Heat of formation + Delta-G solvation = 43.181177 kcal Electronic energy + Delta-G solvation = -19204.953832 eV Core-core repulsion = 16367.494388 eV Total energy + Delta-G solvation = -2837.459444 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.82103 -38.51379 -37.66088 -35.04978 -34.86369 -33.06424 -31.56354 -29.59940 -28.59750 -28.23742 -24.64909 -24.30474 -22.98423 -21.35822 -19.86314 -18.64840 -18.03719 -17.22837 -16.84716 -16.16952 -15.43091 -15.29486 -14.93415 -14.72898 -14.53161 -14.33696 -14.14810 -14.00777 -13.91231 -13.58206 -13.45334 -13.15480 -13.03898 -12.98785 -12.85554 -12.66354 -12.54439 -12.41444 -12.01689 -11.91490 -11.50505 -10.69765 -10.64324 -10.45766 -9.74008 -9.44567 -8.26773 -6.37520 -0.39626 0.17104 1.37173 1.39234 1.50254 1.70104 1.98443 2.34641 2.75317 2.81990 2.92334 3.06513 3.47095 3.64933 3.90192 4.14529 4.25043 4.38084 4.40556 4.55804 4.63085 4.71149 4.75232 4.86217 4.86508 4.94192 5.02299 5.06065 5.09972 5.16283 5.18163 5.25704 5.32478 5.55364 5.65297 5.96733 6.03439 6.48278 6.62420 6.75079 6.97427 7.31389 8.84777 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.020019 B = 0.006447 C = 0.005866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.334776 B = 4341.785304 C = 4772.253004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.062 3.938 3 N -0.508 5.508 4 C 0.231 3.769 5 C -0.529 4.529 6 H 0.063 0.937 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.970 3.030 10 H -0.277 1.277 11 H -0.276 1.276 12 H -0.262 1.262 13 C 0.349 3.651 14 N -0.545 5.545 15 C 0.157 3.843 16 C -0.104 4.104 17 C -0.172 4.172 18 C 0.016 3.984 19 C -0.118 4.118 20 C -0.102 4.102 21 C 0.295 3.705 22 N -0.459 5.459 23 H 0.083 0.917 24 H 0.045 0.955 25 H 0.046 0.954 26 H 0.072 0.928 27 H 0.042 0.958 28 H -0.010 1.010 29 H -0.019 1.019 30 H 0.266 0.734 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.067 0.933 34 H 0.194 0.806 35 H 0.102 0.898 36 H 0.115 0.885 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.578 2.117 16.913 19.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.065 4.065 3 N -0.231 5.231 4 C 0.107 3.893 5 C -0.567 4.567 6 H 0.081 0.919 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.794 3.206 10 H -0.202 1.202 11 H -0.202 1.202 12 H -0.187 1.187 13 C 0.118 3.882 14 N -0.259 5.259 15 C 0.017 3.983 16 C -0.161 4.161 17 C -0.191 4.191 18 C 0.006 3.994 19 C -0.174 4.174 20 C -0.110 4.110 21 C -0.020 4.020 22 N -0.136 5.136 23 H 0.102 0.898 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.090 0.910 27 H 0.060 0.940 28 H 0.008 0.992 29 H -0.001 1.001 30 H 0.075 0.925 31 H 0.106 0.894 32 H 0.135 0.865 33 H 0.086 0.914 34 H 0.211 0.789 35 H 0.121 0.879 36 H 0.133 0.867 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.976 2.367 15.035 18.198 hybrid contribution 0.882 -0.193 -0.551 1.058 sum -9.094 2.174 14.484 17.240 Atomic orbital electron populations 1.21668 0.93676 1.02304 1.01114 1.22041 0.96217 0.86873 1.01361 1.60178 1.23996 1.20587 1.18385 1.19208 0.81196 0.94084 0.94853 1.21377 0.93711 1.45568 0.96022 0.91928 1.25885 0.94975 0.95095 1.03262 1.70087 0.99120 1.49066 1.38678 0.85375 0.77883 0.78599 0.78745 1.20229 1.20157 1.18658 1.20121 0.88928 0.90060 0.89090 1.67831 1.22213 1.35195 1.00697 1.22153 0.92035 0.92137 0.91937 1.20919 1.00902 1.00544 0.93702 1.22141 0.99157 0.96489 1.01339 1.20697 0.93523 0.95845 0.89305 1.21017 1.00144 0.92228 1.04030 1.16878 1.05099 0.98538 0.90491 1.25249 0.92298 0.92038 0.92391 1.81105 1.11803 1.11083 1.09584 0.89819 0.93606 0.93435 0.90974 0.93991 0.99153 1.00070 0.92476 0.89351 0.86466 0.91413 0.78879 0.87947 0.86662 0.92665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.37 10.07 71.98 0.72 -3.64 16 2 C 0.06 2.56 5.49 86.30 0.47 3.04 16 3 N -0.51 -23.80 3.79 -705.34 -2.67 -26.48 16 4 C 0.23 13.06 4.52 85.56 0.39 13.44 16 5 C -0.53 -31.23 8.24 25.60 0.21 -31.02 16 6 H 0.06 3.65 7.31 -2.91 -0.02 3.63 16 7 C 0.01 0.39 5.46 84.65 0.46 0.85 16 8 N -0.93 -57.28 13.29 21.45 0.28 -56.99 16 9 Si 0.97 45.72 29.54 68.60 2.03 47.75 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 12 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 13 C 0.35 14.08 4.55 133.62 0.61 14.68 16 14 N -0.55 -20.08 9.32 -180.52 -1.68 -21.77 16 15 C 0.16 4.04 6.78 42.57 0.29 4.32 16 16 C -0.10 -1.78 10.16 71.23 0.72 -1.06 16 17 C -0.17 -3.30 9.41 22.33 0.21 -3.09 16 18 C 0.02 0.39 5.95 -19.41 -0.12 0.27 16 19 C -0.12 -1.87 9.68 71.24 0.69 -1.18 16 20 C -0.10 -3.55 5.77 -21.05 -0.12 -3.67 16 21 C 0.30 11.37 13.45 88.33 1.19 12.56 16 22 N -0.46 -19.10 18.54 19.00 0.35 -18.75 16 23 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 24 H 0.04 1.48 7.60 -2.39 -0.02 1.46 16 25 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 26 H 0.07 3.27 6.58 -2.39 -0.02 3.25 16 27 H 0.04 1.72 7.40 -2.39 -0.02 1.70 16 28 H -0.01 -0.60 8.05 -2.39 -0.02 -0.62 16 29 H -0.02 -1.13 8.12 -2.39 -0.02 -1.15 16 30 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 31 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.12 1.03 8.07 -2.38 -0.02 1.02 16 33 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.19 1.65 8.06 -2.91 -0.02 1.62 16 35 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.11 1.04 8.10 -2.39 -0.02 1.02 16 37 H 0.05 1.10 7.19 -2.39 -0.02 1.09 16 Total: -1.00 -75.39 320.80 5.10 -70.29 By element: Atomic # 1 Polarization: -0.60 SS G_CDS: 1.06 Total: 0.46 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: 5.73 Total: 5.50 kcal Atomic # 7 Polarization: -120.27 SS G_CDS: -3.72 Total: -123.99 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -75.39 5.10 -70.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042451208.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.467 kcal (2) G-P(sol) polarization free energy of solvation -75.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds