Wall clock time and date at job start Mon Mar 30 2020 07:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47400 * 2 1 4 4 N 1.46904 * 109.47025 * 239.99671 * 2 1 3 5 5 C 1.46892 * 111.00099 * 298.34276 * 4 2 1 6 6 C 1.50700 * 109.47355 * 291.74880 * 5 4 2 7 7 H 1.07995 * 119.99874 * 4.45709 * 6 5 4 8 8 C 1.37879 * 119.99760 * 184.45874 * 6 5 4 9 9 N 1.31504 * 120.00439 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99477 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47139 * 90.00287 * 10 8 6 12 12 H 1.48500 * 109.46977 * 209.99751 * 10 8 6 13 13 H 1.48502 * 109.47151 * 330.00036 * 10 8 6 14 14 C 1.39490 * 110.99622 * 62.29864 * 4 2 1 15 15 C 1.38932 * 119.94558 * 292.86619 * 14 4 2 16 16 C 1.37797 * 120.15973 * 180.02562 * 15 14 4 17 17 C 1.39765 * 120.03923 * 359.97438 * 16 15 14 18 18 C 1.43205 * 120.05308 * 180.02562 * 17 16 15 19 19 N 7.39213 * 78.50453 * 290.22640 * 2 1 3 20 20 C 1.39811 * 119.89637 * 0.02562 * 17 16 15 21 21 C 1.38234 * 119.84029 * 359.72149 * 20 17 16 22 22 N 1.40027 * 120.02253 * 180.29177 * 21 20 17 23 23 H 1.08996 * 109.47002 * 51.36551 * 1 2 3 24 24 H 1.09000 * 109.47510 * 291.36770 * 1 2 3 25 25 H 1.08999 * 109.47588 * 171.36397 * 1 2 3 26 26 H 1.09002 * 109.46658 * 120.00327 * 2 1 3 27 27 H 1.09005 * 109.47099 * 62.94126 * 3 2 1 28 28 H 1.09001 * 109.47322 * 182.94326 * 3 2 1 29 29 H 1.09000 * 109.47501 * 302.94696 * 3 2 1 30 30 H 1.08999 * 109.47434 * 51.74876 * 5 4 2 31 31 H 1.09007 * 109.47363 * 171.75041 * 5 4 2 32 32 H 0.97001 * 120.00189 * 179.97438 * 9 8 6 33 33 H 1.08006 * 119.92681 * 0.02634 * 15 14 4 34 34 H 1.07997 * 119.98663 * 180.02562 * 16 15 14 35 35 H 1.07996 * 120.08162 * 179.97438 * 20 17 16 36 36 H 0.97006 * 120.00168 * 180.23160 * 22 21 20 37 37 H 0.97005 * 120.00555 * 0.23413 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 1.5813 -2.0945 -1.2136 6 6 2.2782 -2.8500 -0.1115 7 1 2.9213 -2.3255 0.5797 8 6 2.0947 -4.2107 0.0144 9 7 1.3112 -4.8492 -0.8269 10 14 2.9591 -5.1472 1.3802 11 1 2.0957 -5.1698 2.5882 12 1 3.2241 -6.5389 0.9352 13 1 4.2446 -4.4773 1.7030 14 6 1.6155 -0.0306 -2.3588 15 6 0.2696 0.0097 -2.7010 16 6 -0.1346 0.6619 -3.8456 17 6 0.8097 1.2858 -4.6658 18 6 0.3900 1.9642 -5.8551 19 7 0.0568 2.5044 -6.7971 20 6 2.1646 1.2464 -4.3233 21 6 2.5643 0.5953 -3.1713 22 7 3.9197 0.5588 -2.8215 23 1 -0.3633 0.6416 -0.8027 24 1 -0.3634 0.3744 0.9570 25 1 -0.3634 -1.0160 -0.1543 26 1 1.8932 -0.5139 0.8900 27 1 1.7204 1.9408 0.9152 28 1 3.1288 1.4428 -0.0528 29 1 1.6343 1.9713 -0.8624 30 1 0.5032 -2.1397 -1.0597 31 1 1.8301 -2.5433 -2.1754 32 1 1.1824 -5.8066 -0.7386 33 1 -0.4619 -0.4713 -2.0684 34 1 -1.1816 0.6919 -4.1087 35 1 2.8968 1.7271 -4.9551 36 1 4.2002 0.0989 -2.0148 37 1 4.5782 0.9934 -3.3858 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042528869.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:09 Heat of formation + Delta-G solvation = 68.167957 kcal Electronic energy + Delta-G solvation = -19344.605342 eV Core-core repulsion = 16508.229407 eV Total energy + Delta-G solvation = -2836.375936 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.09243 -37.38494 -36.01579 -34.10683 -32.85946 -31.33579 -29.77978 -28.43306 -27.07676 -26.15571 -23.11070 -22.39289 -21.75645 -19.50104 -18.62769 -16.71156 -16.19453 -15.63484 -15.51138 -15.04539 -14.49112 -14.12281 -13.80233 -13.76504 -13.59982 -13.21027 -13.06620 -12.49977 -12.26611 -12.19233 -12.01121 -11.68288 -11.45020 -11.21562 -11.06621 -10.81013 -10.62368 -10.52366 -10.30824 -10.00976 -9.98311 -9.30606 -8.52822 -8.39094 -7.52993 -7.13971 -6.09217 -4.11059 1.05911 1.83647 2.79110 3.19419 3.27028 3.34401 3.37021 4.00239 4.18104 4.32283 4.39469 4.68008 5.18441 5.26757 5.36320 5.48225 5.64013 5.68838 5.73601 5.99567 6.00865 6.08605 6.13950 6.24393 6.28811 6.44787 6.55427 6.66367 6.72673 6.82549 6.94251 7.26178 7.32254 7.61025 7.69117 7.82824 8.02228 8.10606 8.21912 8.53512 8.95088 9.53145 11.01123 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.025500 B = 0.005618 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.779601 B = 4982.602042 C = 5171.314232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.089 3.911 3 C -0.143 4.143 4 N -0.500 5.500 5 C 0.195 3.805 6 C -0.509 4.509 7 H 0.063 0.937 8 C 0.058 3.942 9 N -0.895 5.895 10 Si 0.896 3.104 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.077 3.923 15 C -0.116 4.116 16 C -0.121 4.121 17 C -0.009 4.009 18 C 0.269 3.731 19 N -0.443 5.443 20 C -0.158 4.158 21 C 0.232 3.768 22 N -0.864 5.864 23 H 0.060 0.940 24 H 0.049 0.951 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.004 0.996 31 H 0.034 0.966 32 H 0.262 0.738 33 H 0.140 0.860 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.413 0.587 37 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.346 10.826 -0.809 10.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.018 4.018 3 C -0.200 4.200 4 N -0.221 5.221 5 C 0.072 3.928 6 C -0.547 4.547 7 H 0.081 0.919 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.724 3.276 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.023 4.023 15 C -0.137 4.137 16 C -0.145 4.145 17 C -0.013 4.013 18 C -0.045 4.045 19 N -0.118 5.118 20 C -0.185 4.185 21 C 0.125 3.875 22 N -0.403 5.403 23 H 0.078 0.922 24 H 0.068 0.932 25 H 0.091 0.909 26 H 0.111 0.889 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.021 0.979 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.158 0.842 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.244 0.756 37 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 1.278 11.454 -2.263 11.745 hybrid contribution 0.002 -0.981 1.077 1.456 sum 1.280 10.473 -1.187 10.618 Atomic orbital electron populations 1.22847 0.98538 1.02846 1.01300 1.21566 0.92344 0.93568 0.94275 1.21876 1.01290 0.96145 1.00729 1.59888 1.59548 1.04515 0.98170 1.19886 0.94592 0.79992 0.98317 1.21096 1.28162 0.92304 1.13176 0.91882 1.24950 0.95444 0.97637 0.96320 1.69943 1.37652 1.09209 1.36655 0.86536 0.79978 0.79142 0.81969 1.20766 1.21319 1.19819 1.18748 0.90403 0.98444 0.94655 1.21933 0.96752 0.98560 0.96410 1.20748 0.98412 1.00233 0.95095 1.15664 0.93591 1.01567 0.90517 1.25891 0.92925 0.92854 0.92848 1.81189 1.08604 1.10569 1.11482 1.20282 0.94142 1.05941 0.98089 1.17405 0.85329 0.93103 0.91705 1.42461 1.03547 1.63244 1.31020 0.92161 0.93179 0.90944 0.88879 0.93114 0.92464 0.93227 0.97870 0.94819 0.92846 0.84250 0.86068 0.85789 0.75575 0.78263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.08 7.48 37.16 0.28 -2.80 16 2 C 0.09 1.48 2.82 -67.71 -0.19 1.29 16 3 C -0.14 -1.96 8.93 37.15 0.33 -1.63 16 4 N -0.50 -9.17 3.66 -164.73 -0.60 -9.77 16 5 C 0.20 4.54 4.07 -4.98 -0.02 4.52 16 6 C -0.51 -13.00 8.60 -34.44 -0.30 -13.30 16 7 H 0.06 1.59 7.10 -52.49 -0.37 1.21 16 8 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 9 N -0.90 -25.22 13.29 55.43 0.74 -24.48 16 10 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 14 C 0.08 1.27 3.23 -83.56 -0.27 1.00 16 15 C -0.12 -1.79 6.95 -39.49 -0.27 -2.07 16 16 C -0.12 -1.67 9.74 -39.17 -0.38 -2.05 16 17 C -0.01 -0.13 5.74 -106.81 -0.61 -0.74 16 18 C 0.27 3.82 15.32 -22.47 -0.34 3.48 16 19 N -0.44 -6.98 18.54 41.84 0.78 -6.21 16 20 C -0.16 -2.06 9.59 -38.99 -0.37 -2.43 16 21 C 0.23 3.33 6.68 -83.56 -0.56 2.78 16 22 N -0.86 -10.72 9.09 32.51 0.30 -10.43 16 23 H 0.06 0.87 5.37 -51.93 -0.28 0.59 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 1.30 5.51 -51.93 -0.29 1.02 16 26 H 0.09 1.72 6.88 -51.93 -0.36 1.36 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.68 7.22 -51.93 -0.38 0.31 16 30 H 0.00 0.09 5.22 -51.93 -0.27 -0.18 16 31 H 0.03 0.88 8.03 -51.93 -0.42 0.47 16 32 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.14 2.21 4.92 -52.48 -0.26 1.95 16 34 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.41 5.65 8.10 -40.82 -0.33 5.32 16 37 H 0.39 3.69 8.84 -40.82 -0.36 3.33 16 LS Contribution 306.09 15.07 4.61 4.61 Total: -1.00 -27.83 306.09 -6.57 -34.40 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -4.56 Total: 6.89 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -2.81 Total: -10.50 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: 1.20 Total: -50.89 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.83 -6.57 -34.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042528869.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.569 kcal (2) G-P(sol) polarization free energy of solvation -27.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds