Wall clock time and date at job start Mon Mar 30 2020 07:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47400 * 2 1 4 4 N 1.46904 * 109.47025 * 239.99671 * 2 1 3 5 5 C 1.46892 * 111.00099 * 298.34276 * 4 2 1 6 6 C 1.50700 * 109.47355 * 291.74880 * 5 4 2 7 7 H 1.07995 * 119.99874 * 4.45709 * 6 5 4 8 8 C 1.37879 * 119.99760 * 184.45874 * 6 5 4 9 9 N 1.31504 * 120.00439 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99477 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47139 * 90.00287 * 10 8 6 12 12 H 1.48500 * 109.46977 * 209.99751 * 10 8 6 13 13 H 1.48502 * 109.47151 * 330.00036 * 10 8 6 14 14 C 1.39490 * 110.99622 * 62.29864 * 4 2 1 15 15 C 1.38932 * 119.94558 * 292.86619 * 14 4 2 16 16 C 1.37797 * 120.15973 * 180.02562 * 15 14 4 17 17 C 1.39765 * 120.03923 * 359.97438 * 16 15 14 18 18 C 1.43205 * 120.05308 * 180.02562 * 17 16 15 19 19 N 7.39213 * 78.50453 * 290.22640 * 2 1 3 20 20 C 1.39811 * 119.89637 * 0.02562 * 17 16 15 21 21 C 1.38234 * 119.84029 * 359.72149 * 20 17 16 22 22 N 1.40027 * 120.02253 * 180.29177 * 21 20 17 23 23 H 1.08996 * 109.47002 * 51.36551 * 1 2 3 24 24 H 1.09000 * 109.47510 * 291.36770 * 1 2 3 25 25 H 1.08999 * 109.47588 * 171.36397 * 1 2 3 26 26 H 1.09002 * 109.46658 * 120.00327 * 2 1 3 27 27 H 1.09005 * 109.47099 * 62.94126 * 3 2 1 28 28 H 1.09001 * 109.47322 * 182.94326 * 3 2 1 29 29 H 1.09000 * 109.47501 * 302.94696 * 3 2 1 30 30 H 1.08999 * 109.47434 * 51.74876 * 5 4 2 31 31 H 1.09007 * 109.47363 * 171.75041 * 5 4 2 32 32 H 0.97001 * 120.00189 * 179.97438 * 9 8 6 33 33 H 1.08006 * 119.92681 * 0.02634 * 15 14 4 34 34 H 1.07997 * 119.98663 * 180.02562 * 16 15 14 35 35 H 1.07996 * 120.08162 * 179.97438 * 20 17 16 36 36 H 0.97006 * 120.00168 * 180.23160 * 22 21 20 37 37 H 0.97005 * 120.00555 * 0.23413 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 1.5813 -2.0945 -1.2136 6 6 2.2782 -2.8500 -0.1115 7 1 2.9213 -2.3255 0.5797 8 6 2.0947 -4.2107 0.0144 9 7 1.3112 -4.8492 -0.8269 10 14 2.9591 -5.1472 1.3802 11 1 2.0957 -5.1698 2.5882 12 1 3.2241 -6.5389 0.9352 13 1 4.2446 -4.4773 1.7030 14 6 1.6155 -0.0306 -2.3588 15 6 0.2696 0.0097 -2.7010 16 6 -0.1346 0.6619 -3.8456 17 6 0.8097 1.2858 -4.6658 18 6 0.3900 1.9642 -5.8551 19 7 0.0568 2.5044 -6.7971 20 6 2.1646 1.2464 -4.3233 21 6 2.5643 0.5953 -3.1713 22 7 3.9197 0.5588 -2.8215 23 1 -0.3633 0.6416 -0.8027 24 1 -0.3634 0.3744 0.9570 25 1 -0.3634 -1.0160 -0.1543 26 1 1.8932 -0.5139 0.8900 27 1 1.7204 1.9408 0.9152 28 1 3.1288 1.4428 -0.0528 29 1 1.6343 1.9713 -0.8624 30 1 0.5032 -2.1397 -1.0597 31 1 1.8301 -2.5433 -2.1754 32 1 1.1824 -5.8066 -0.7386 33 1 -0.4619 -0.4713 -2.0684 34 1 -1.1816 0.6919 -4.1087 35 1 2.8968 1.7271 -4.9551 36 1 4.2002 0.0989 -2.0148 37 1 4.5782 0.9934 -3.3858 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042528869.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:08 Heat of formation + Delta-G solvation = 51.499652 kcal Electronic energy + Delta-G solvation = -19345.328134 eV Core-core repulsion = 16508.229407 eV Total energy + Delta-G solvation = -2837.098727 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.34003 -38.65706 -37.23163 -35.20290 -34.80852 -32.65555 -31.15605 -29.70949 -28.36570 -27.73022 -24.60634 -23.81704 -23.02303 -20.86057 -19.75537 -18.29304 -17.66115 -17.06341 -16.89954 -16.32056 -16.03081 -15.42864 -15.06175 -14.95402 -14.80364 -14.58742 -14.40983 -13.93144 -13.69776 -13.42353 -13.29000 -13.04965 -12.78518 -12.64796 -12.64573 -12.34773 -12.30862 -11.93848 -11.68556 -11.50086 -11.34098 -11.08140 -10.53847 -9.59791 -9.03811 -8.25733 -8.11023 -6.20917 -0.10345 0.70811 1.45393 1.46562 1.56809 1.64703 2.03116 2.45235 2.86111 3.03886 3.17634 3.24846 3.39751 4.06076 4.20116 4.31654 4.41023 4.51501 4.55679 4.74358 4.85921 4.93370 4.99987 5.06183 5.08816 5.13776 5.30839 5.35231 5.42898 5.51491 5.57133 5.66153 5.78889 5.85145 6.17497 6.40072 6.47312 6.66488 6.94715 7.01701 7.25970 7.47948 8.97541 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.025500 B = 0.005618 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.779601 B = 4982.602042 C = 5171.314232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.085 3.915 3 C -0.129 4.129 4 N -0.494 5.494 5 C 0.214 3.786 6 C -0.514 4.514 7 H 0.065 0.935 8 C 0.005 3.995 9 N -0.934 5.934 10 Si 0.960 3.040 11 H -0.276 1.276 12 H -0.289 1.289 13 H -0.264 1.264 14 C 0.048 3.952 15 C -0.123 4.123 16 C -0.119 4.119 17 C -0.003 4.003 18 C 0.289 3.711 19 N -0.467 5.467 20 C -0.146 4.146 21 C 0.231 3.769 22 N -0.856 5.856 23 H 0.073 0.927 24 H 0.066 0.934 25 H 0.041 0.959 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.052 0.948 30 H -0.014 1.014 31 H -0.004 1.004 32 H 0.261 0.739 33 H 0.129 0.871 34 H 0.139 0.861 35 H 0.152 0.848 36 H 0.408 0.592 37 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.244 12.422 -0.662 12.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.022 4.022 3 C -0.187 4.187 4 N -0.215 5.215 5 C 0.089 3.911 6 C -0.552 4.552 7 H 0.083 0.917 8 C -0.193 4.193 9 N -0.575 5.575 10 Si 0.786 3.214 11 H -0.202 1.202 12 H -0.215 1.215 13 H -0.188 1.188 14 C -0.052 4.052 15 C -0.144 4.144 16 C -0.142 4.142 17 C -0.007 4.007 18 C -0.026 4.026 19 N -0.143 5.143 20 C -0.172 4.172 21 C 0.122 3.878 22 N -0.395 5.395 23 H 0.092 0.908 24 H 0.085 0.915 25 H 0.060 0.940 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.003 0.997 31 H 0.014 0.986 32 H 0.070 0.930 33 H 0.146 0.854 34 H 0.157 0.843 35 H 0.169 0.831 36 H 0.238 0.762 37 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 2.202 13.090 -2.121 13.442 hybrid contribution -0.284 -1.416 0.981 1.745 sum 1.918 11.674 -1.140 11.885 Atomic orbital electron populations 1.22742 0.97934 1.01272 1.02724 1.21628 0.92922 0.95019 0.92634 1.21743 1.01327 0.93783 1.01799 1.59699 1.59528 1.02437 0.99849 1.19432 0.93228 0.82918 0.95486 1.21449 1.27615 0.92686 1.13452 0.91674 1.25773 0.96189 0.98774 0.98534 1.70076 1.39413 1.09353 1.38617 0.85521 0.79210 0.77528 0.79167 1.20199 1.21494 1.18782 1.18850 0.91418 1.00155 0.94783 1.21847 0.96305 0.99095 0.97159 1.20855 0.99492 0.99581 0.94312 1.15677 0.93862 1.01134 0.90065 1.25789 0.92173 0.92172 0.92425 1.81224 1.09396 1.11426 1.12252 1.20513 0.94449 1.04769 0.97495 1.17440 0.85700 0.92965 0.91670 1.42431 1.03214 1.62869 1.30979 0.90794 0.91531 0.94047 0.91149 0.91221 0.92198 0.92939 0.99686 0.98570 0.92988 0.85351 0.84308 0.83058 0.76214 0.76394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.89 7.48 71.98 0.54 -5.35 16 2 C 0.08 2.79 2.82 44.91 0.13 2.92 16 3 C -0.13 -3.30 8.93 71.98 0.64 -2.65 16 4 N -0.49 -18.31 3.66 -675.07 -2.47 -20.78 16 5 C 0.21 10.34 4.07 85.56 0.35 10.69 16 6 C -0.51 -26.82 8.60 25.60 0.22 -26.60 16 7 H 0.07 3.30 7.10 -2.91 -0.02 3.28 16 8 C 0.01 0.28 5.46 84.66 0.46 0.75 16 9 N -0.93 -54.13 13.29 21.45 0.28 -53.84 16 10 Si 0.96 42.41 29.54 68.60 2.03 44.44 16 11 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 12 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 13 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 14 C 0.05 1.55 3.23 38.45 0.12 1.67 16 15 C -0.12 -3.79 6.95 22.33 0.16 -3.63 16 16 C -0.12 -3.09 9.74 22.53 0.22 -2.87 16 17 C 0.00 -0.08 5.74 -21.28 -0.12 -0.20 16 18 C 0.29 7.51 15.32 88.33 1.35 8.86 16 19 N -0.47 -13.81 18.54 19.00 0.35 -13.46 16 20 C -0.15 -3.40 9.59 22.65 0.22 -3.18 16 21 C 0.23 6.22 6.68 38.19 0.26 6.48 16 22 N -0.86 -19.60 9.09 -51.06 -0.46 -20.06 16 23 H 0.07 2.08 5.37 -2.39 -0.01 2.07 16 24 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.04 1.54 5.51 -2.39 -0.01 1.53 16 26 H 0.07 2.62 6.88 -2.39 -0.02 2.60 16 27 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 28 H 0.06 1.49 8.14 -2.39 -0.02 1.48 16 29 H 0.05 1.32 7.22 -2.39 -0.02 1.30 16 30 H -0.01 -0.74 5.22 -2.39 -0.01 -0.75 16 31 H 0.00 -0.21 8.03 -2.38 -0.02 -0.23 16 32 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 33 H 0.13 4.18 4.92 -2.91 -0.01 4.17 16 34 H 0.14 3.06 8.06 -2.91 -0.02 3.03 16 35 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 36 H 0.41 10.62 8.10 -92.70 -0.75 9.87 16 37 H 0.41 6.60 8.84 -92.70 -0.82 5.78 16 Total: -1.00 -60.55 306.09 3.82 -56.73 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -0.45 Total: 20.10 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: 4.54 Total: -13.12 kcal Atomic # 7 Polarization: -105.84 SS G_CDS: -2.30 Total: -108.14 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -60.55 3.82 -56.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042528869.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.229 kcal (2) G-P(sol) polarization free energy of solvation -60.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds