Wall clock time and date at job start Mon Mar 30 2020 06:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21314 * 119.99816 * 2 1 4 4 C 1.46648 * 120.00174 * 180.02562 * 2 1 3 5 5 C 1.40063 * 120.24224 * 0.26994 * 4 2 1 6 6 C 1.37624 * 119.89873 * 180.27817 * 5 4 2 7 7 C 1.38697 * 120.39690 * 359.74603 * 6 5 4 8 8 C 1.37943 * 120.48878 * 359.97438 * 7 6 5 9 9 C 1.38958 * 120.08887 * 359.97438 * 8 7 6 10 10 N 1.38696 * 120.19383 * 180.02562 * 9 8 7 11 11 C 1.46902 * 111.00106 * 63.95734 * 10 9 8 12 12 C 1.50698 * 109.46979 * 68.49032 * 11 10 9 13 13 H 1.08002 * 120.00210 * 5.05773 * 12 11 10 14 14 C 1.37874 * 119.99964 * 185.04738 * 12 11 10 15 15 N 1.31516 * 120.00072 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 120.00122 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46886 * 90.00349 * 16 14 12 18 18 H 1.48501 * 109.47223 * 210.00301 * 16 14 12 19 19 H 1.48499 * 109.47088 * 330.00562 * 16 14 12 20 20 C 1.46904 * 111.00044 * 300.00339 * 10 9 8 21 21 C 1.53002 * 117.49738 * 187.38043 * 20 10 9 22 22 C 1.52994 * 117.49667 * 118.75926 * 20 10 9 23 23 H 1.08992 * 109.46995 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46703 * 299.99506 * 1 2 3 25 25 H 1.08996 * 109.47052 * 59.99485 * 1 2 3 26 26 H 1.07998 * 120.04884 * 0.02562 * 5 4 2 27 27 H 1.08001 * 119.79816 * 179.75919 * 6 5 4 28 28 H 1.07994 * 119.75578 * 179.97438 * 7 6 5 29 29 H 1.08000 * 119.95109 * 180.02562 * 8 7 6 30 30 H 1.08995 * 109.46889 * 188.49329 * 11 10 9 31 31 H 1.08998 * 109.46968 * 308.49599 * 11 10 9 32 32 H 0.97005 * 120.00188 * 179.97438 * 15 14 12 33 33 H 1.08996 * 115.56057 * 333.06821 * 20 10 9 34 34 H 1.09000 * 117.49618 * 145.02171 * 21 20 10 35 35 H 1.08998 * 117.49634 * 0.02562 * 21 20 10 36 36 H 1.08998 * 117.50357 * 359.97438 * 22 20 10 37 37 H 1.09005 * 117.49460 * 214.97706 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2403 -1.2700 -0.0006 5 6 1.5452 -2.4859 -0.0068 6 6 2.2404 -3.6736 -0.0015 7 6 3.6274 -3.6749 0.0047 8 6 4.3284 -2.4869 0.0051 9 6 3.6469 -1.2759 -0.0013 10 7 4.3495 -0.0801 -0.0014 11 6 5.1408 0.0655 -1.2305 12 6 4.2151 0.2540 -2.4045 13 1 3.1511 0.3465 -2.2439 14 6 4.7264 0.3085 -3.6838 15 7 6.0220 0.1956 -3.8795 16 14 3.5790 0.5429 -5.1391 17 1 3.4134 1.9935 -5.4103 18 1 4.1550 -0.1217 -6.3357 19 1 2.2564 -0.0567 -4.8283 20 6 5.2022 0.0297 1.1898 21 6 5.9121 1.3636 1.4299 22 6 6.7119 0.1432 0.9697 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 0.4652 -2.4914 -0.0117 27 1 1.7028 -4.6103 -0.0024 28 1 4.1625 -4.6129 0.0092 29 1 5.4083 -2.4980 0.0095 30 1 5.7951 0.9326 -1.1407 31 1 5.7432 -0.8301 -1.3829 32 1 6.3818 0.2336 -4.7795 33 1 4.8613 -0.5236 2.0648 34 1 6.0383 1.6878 2.4629 35 1 5.7461 2.1598 0.7043 36 1 7.0727 0.1360 -0.0588 37 1 7.3644 -0.3355 1.7001 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042531406.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:22 Heat of formation + Delta-G solvation = 41.003605 kcal Electronic energy + Delta-G solvation = -19816.976524 eV Core-core repulsion = 16947.129903 eV Total energy + Delta-G solvation = -2869.846621 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.87841 -37.94782 -37.03317 -33.66267 -32.35933 -31.51819 -28.95152 -28.70434 -26.57677 -23.21143 -22.94093 -21.81285 -21.65657 -19.29454 -19.07745 -17.14376 -16.22233 -15.54569 -15.14907 -14.96313 -14.49421 -14.25152 -14.09997 -13.95205 -13.50272 -13.22109 -12.39431 -12.16369 -11.80418 -11.75487 -11.54753 -11.50581 -11.39555 -10.95605 -10.86230 -10.78540 -10.62124 -10.27865 -9.94714 -9.71814 -9.12302 -8.94749 -8.50667 -8.39773 -8.08628 -7.14565 -6.00566 -3.99732 1.26774 1.80773 3.12110 3.33732 3.39022 3.43150 4.26705 4.34186 4.47404 4.67218 4.73348 5.14852 5.33194 5.35639 5.39542 5.47859 5.54549 5.58512 5.70112 5.73808 5.81912 5.90110 5.95979 6.18013 6.20757 6.30588 6.43812 6.58834 6.66114 6.78747 6.82225 6.96476 7.16511 7.26531 7.36041 7.81182 8.08938 8.31418 8.38844 8.53600 9.08344 9.63472 11.10283 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.013397 B = 0.009995 C = 0.008114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.560106 B = 2800.867314 C = 3449.788088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.378 3.622 3 O -0.402 6.402 4 C -0.154 4.154 5 C -0.081 4.081 6 C -0.153 4.153 7 C -0.087 4.087 8 C -0.160 4.160 9 C 0.200 3.800 10 N -0.466 5.466 11 C 0.200 3.800 12 C -0.498 4.498 13 H 0.063 0.937 14 C 0.056 3.944 15 N -0.900 5.900 16 Si 0.894 3.106 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.031 3.969 21 C -0.168 4.168 22 C -0.222 4.222 23 H 0.075 0.925 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.127 0.873 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.122 0.878 30 H 0.037 0.963 31 H 0.004 0.996 32 H 0.260 0.740 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.763 -6.245 9.899 13.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.252 3.748 3 O -0.272 6.272 4 C -0.156 4.156 5 C -0.099 4.099 6 C -0.171 4.171 7 C -0.106 4.106 8 C -0.180 4.180 9 C 0.105 3.895 10 N -0.185 5.185 11 C 0.078 3.922 12 C -0.537 4.537 13 H 0.081 0.919 14 C -0.145 4.145 15 N -0.540 5.540 16 Si 0.722 3.278 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.077 4.077 21 C -0.206 4.206 22 C -0.262 4.262 23 H 0.094 0.906 24 H 0.102 0.898 25 H 0.104 0.896 26 H 0.145 0.855 27 H 0.137 0.863 28 H 0.135 0.865 29 H 0.140 0.860 30 H 0.055 0.945 31 H 0.021 0.979 32 H 0.070 0.930 33 H 0.120 0.880 34 H 0.105 0.895 35 H 0.117 0.883 36 H 0.128 0.872 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.643 -5.251 9.740 12.907 hybrid contribution 0.085 -0.680 -1.064 1.266 sum -6.558 -5.931 8.676 12.388 Atomic orbital electron populations 1.22251 0.95683 1.03742 1.04044 1.21999 0.90317 0.88391 0.74122 1.90651 1.71178 1.33271 1.32145 1.20547 0.93314 0.94852 1.06870 1.21335 0.99435 0.91615 0.97543 1.20900 0.94235 0.97643 1.04342 1.21126 0.94294 0.97627 0.97567 1.21836 1.00510 0.93070 1.02566 1.18892 0.91830 0.88984 0.89843 1.59339 1.27145 1.29134 1.02878 1.19934 0.92148 0.96508 0.83636 1.21140 0.94249 1.48285 0.90020 0.91855 1.24931 0.95092 0.95616 0.98846 1.69944 1.11230 1.51160 1.21693 0.86543 0.80968 0.78313 0.81940 1.20598 1.21301 1.19920 1.22488 0.89725 1.00759 0.94754 1.22962 1.03758 0.92552 1.01328 1.23626 0.95624 1.03462 1.03445 0.90613 0.89777 0.89556 0.85503 0.86330 0.86517 0.86004 0.94503 0.97854 0.93004 0.88033 0.89505 0.88264 0.87247 0.89870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.65 10.19 36.01 0.37 -2.28 16 2 C 0.38 7.12 6.87 -30.91 -0.21 6.91 16 3 O -0.40 -9.23 15.21 5.53 0.08 -9.15 16 4 C -0.15 -2.89 5.88 -104.91 -0.62 -3.51 16 5 C -0.08 -1.21 9.44 -39.12 -0.37 -1.58 16 6 C -0.15 -2.15 10.02 -39.64 -0.40 -2.55 16 7 C -0.09 -1.35 10.03 -39.52 -0.40 -1.74 16 8 C -0.16 -2.98 8.55 -39.42 -0.34 -3.31 16 9 C 0.20 4.16 3.99 -83.58 -0.33 3.83 16 10 N -0.47 -10.55 2.60 -164.66 -0.43 -10.98 16 11 C 0.20 5.26 3.26 -4.98 -0.02 5.24 16 12 C -0.50 -14.43 8.73 -34.44 -0.30 -14.73 16 13 H 0.06 1.88 6.84 -52.49 -0.36 1.52 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 16 Si 0.89 22.43 29.54 -169.99 -5.02 17.41 16 17 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 20 C 0.03 0.60 5.51 -67.71 -0.37 0.23 16 21 C -0.17 -3.02 9.98 -26.73 -0.27 -3.28 16 22 C -0.22 -4.00 9.51 -26.73 -0.25 -4.26 16 23 H 0.08 0.80 5.60 -51.93 -0.29 0.51 16 24 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 25 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.13 1.45 5.92 -52.49 -0.31 1.14 16 27 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 28 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 29 H 0.12 2.28 7.58 -52.49 -0.40 1.88 16 30 H 0.04 1.03 6.06 -51.93 -0.31 0.72 16 31 H 0.00 0.10 6.82 -51.93 -0.35 -0.25 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.10 1.77 8.00 -51.93 -0.42 1.36 16 34 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.10 2.00 7.75 -51.93 -0.40 1.59 16 36 H 0.11 2.27 5.90 -51.93 -0.31 1.96 16 37 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 306.83 15.07 4.62 4.62 Total: -1.00 -32.62 306.83 -8.43 -41.05 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -4.82 Total: 2.77 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: -3.60 Total: -19.52 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.31 Total: -37.19 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.08 Total: -9.15 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.62 -8.43 -41.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042531406.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.055 kcal (2) G-P(sol) polarization free energy of solvation -32.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds