Wall clock time and date at job start Mon Mar 30 2020 06:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21314 * 119.99816 * 2 1 4 4 C 1.46648 * 120.00174 * 180.02562 * 2 1 3 5 5 C 1.40063 * 120.24224 * 0.26994 * 4 2 1 6 6 C 1.37624 * 119.89873 * 180.27817 * 5 4 2 7 7 C 1.38697 * 120.39690 * 359.74603 * 6 5 4 8 8 C 1.37943 * 120.48878 * 359.97438 * 7 6 5 9 9 C 1.38958 * 120.08887 * 359.97438 * 8 7 6 10 10 N 1.38696 * 120.19383 * 180.02562 * 9 8 7 11 11 C 1.46902 * 111.00106 * 63.95734 * 10 9 8 12 12 C 1.50698 * 109.46979 * 68.49032 * 11 10 9 13 13 H 1.08002 * 120.00210 * 5.05773 * 12 11 10 14 14 C 1.37874 * 119.99964 * 185.04738 * 12 11 10 15 15 N 1.31516 * 120.00072 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 120.00122 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46886 * 90.00349 * 16 14 12 18 18 H 1.48501 * 109.47223 * 210.00301 * 16 14 12 19 19 H 1.48499 * 109.47088 * 330.00562 * 16 14 12 20 20 C 1.46904 * 111.00044 * 300.00339 * 10 9 8 21 21 C 1.53002 * 117.49738 * 187.38043 * 20 10 9 22 22 C 1.52994 * 117.49667 * 118.75926 * 20 10 9 23 23 H 1.08992 * 109.46995 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46703 * 299.99506 * 1 2 3 25 25 H 1.08996 * 109.47052 * 59.99485 * 1 2 3 26 26 H 1.07998 * 120.04884 * 0.02562 * 5 4 2 27 27 H 1.08001 * 119.79816 * 179.75919 * 6 5 4 28 28 H 1.07994 * 119.75578 * 179.97438 * 7 6 5 29 29 H 1.08000 * 119.95109 * 180.02562 * 8 7 6 30 30 H 1.08995 * 109.46889 * 188.49329 * 11 10 9 31 31 H 1.08998 * 109.46968 * 308.49599 * 11 10 9 32 32 H 0.97005 * 120.00188 * 179.97438 * 15 14 12 33 33 H 1.08996 * 115.56057 * 333.06821 * 20 10 9 34 34 H 1.09000 * 117.49618 * 145.02171 * 21 20 10 35 35 H 1.08998 * 117.49634 * 0.02562 * 21 20 10 36 36 H 1.08998 * 117.50357 * 359.97438 * 22 20 10 37 37 H 1.09005 * 117.49460 * 214.97706 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2403 -1.2700 -0.0006 5 6 1.5452 -2.4859 -0.0068 6 6 2.2404 -3.6736 -0.0015 7 6 3.6274 -3.6749 0.0047 8 6 4.3284 -2.4869 0.0051 9 6 3.6469 -1.2759 -0.0013 10 7 4.3495 -0.0801 -0.0014 11 6 5.1408 0.0655 -1.2305 12 6 4.2151 0.2540 -2.4045 13 1 3.1511 0.3465 -2.2439 14 6 4.7264 0.3085 -3.6838 15 7 6.0220 0.1956 -3.8795 16 14 3.5790 0.5429 -5.1391 17 1 3.4134 1.9935 -5.4103 18 1 4.1550 -0.1217 -6.3357 19 1 2.2564 -0.0567 -4.8283 20 6 5.2022 0.0297 1.1898 21 6 5.9121 1.3636 1.4299 22 6 6.7119 0.1432 0.9697 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 0.4652 -2.4914 -0.0117 27 1 1.7028 -4.6103 -0.0024 28 1 4.1625 -4.6129 0.0092 29 1 5.4083 -2.4980 0.0095 30 1 5.7951 0.9326 -1.1407 31 1 5.7432 -0.8301 -1.3829 32 1 6.3818 0.2336 -4.7795 33 1 4.8613 -0.5236 2.0648 34 1 6.0383 1.6878 2.4629 35 1 5.7461 2.1598 0.7043 36 1 7.0727 0.1360 -0.0588 37 1 7.3644 -0.3355 1.7001 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042531406.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:21 Heat of formation + Delta-G solvation = 21.700609 kcal Electronic energy + Delta-G solvation = -19817.813565 eV Core-core repulsion = 16947.129903 eV Total energy + Delta-G solvation = -2870.683662 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.31908 -39.47241 -38.41946 -35.43269 -34.30638 -32.82560 -30.49165 -29.98241 -28.44621 -24.95889 -24.47914 -23.22135 -23.16036 -20.79419 -20.48281 -18.94912 -17.88152 -17.09934 -16.82075 -16.55401 -16.10430 -15.78554 -15.51826 -15.20258 -14.92897 -14.68488 -14.32009 -13.63631 -13.58756 -13.15745 -12.91236 -12.84100 -12.77869 -12.71150 -12.61750 -12.41643 -12.14671 -11.96330 -11.88400 -11.24850 -11.20358 -10.64725 -10.36879 -9.78926 -9.44803 -8.81838 -8.22920 -6.30860 -0.06399 0.51226 1.32093 1.34901 1.45020 1.78425 2.35170 2.83764 2.96230 3.09661 3.20108 3.43014 3.95819 3.97955 4.03057 4.13747 4.23522 4.30350 4.45365 4.55718 4.61113 4.72352 4.74282 4.78217 4.88281 5.05815 5.07163 5.14359 5.17731 5.26615 5.27806 5.42647 5.58951 5.61874 5.72482 5.99471 6.03239 6.43819 6.71903 6.87839 7.05084 7.37066 8.87456 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.013397 B = 0.009995 C = 0.008114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.560106 B = 2800.867314 C = 3449.788088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.369 3.631 3 O -0.463 6.463 4 C -0.184 4.184 5 C -0.069 4.069 6 C -0.141 4.141 7 C -0.083 4.083 8 C -0.183 4.183 9 C 0.158 3.842 10 N -0.476 5.476 11 C 0.227 3.773 12 C -0.512 4.512 13 H 0.052 0.948 14 C 0.004 3.996 15 N -0.932 5.932 16 Si 0.959 3.041 17 H -0.276 1.276 18 H -0.276 1.276 19 H -0.266 1.266 20 C 0.018 3.982 21 C -0.162 4.162 22 C -0.212 4.212 23 H 0.109 0.891 24 H 0.103 0.897 25 H 0.088 0.912 26 H 0.171 0.829 27 H 0.166 0.834 28 H 0.147 0.853 29 H 0.105 0.895 30 H 0.004 0.996 31 H -0.024 1.024 32 H 0.264 0.736 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.515 -8.505 10.488 16.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.247 3.753 3 O -0.338 6.338 4 C -0.186 4.186 5 C -0.087 4.087 6 C -0.159 4.159 7 C -0.101 4.101 8 C -0.203 4.203 9 C 0.063 3.937 10 N -0.195 5.195 11 C 0.103 3.897 12 C -0.551 4.551 13 H 0.070 0.930 14 C -0.194 4.194 15 N -0.573 5.573 16 Si 0.784 3.216 17 H -0.202 1.202 18 H -0.201 1.201 19 H -0.190 1.190 20 C -0.090 4.090 21 C -0.200 4.200 22 C -0.251 4.251 23 H 0.128 0.872 24 H 0.122 0.878 25 H 0.107 0.893 26 H 0.188 0.812 27 H 0.184 0.816 28 H 0.165 0.835 29 H 0.123 0.877 30 H 0.022 0.978 31 H -0.006 1.006 32 H 0.072 0.928 33 H 0.140 0.860 34 H 0.143 0.857 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.414 -7.536 10.348 15.891 hybrid contribution 0.929 -0.077 -1.180 1.504 sum -8.485 -7.613 9.168 14.629 Atomic orbital electron populations 1.22236 0.91050 1.06311 1.05012 1.22918 0.92912 0.87615 0.71843 1.90626 1.72899 1.35012 1.35233 1.20909 0.92783 0.96735 1.08133 1.21830 1.01528 0.90205 0.95096 1.21464 0.93610 0.99276 1.01520 1.21534 0.95489 0.97395 0.95725 1.21821 0.99988 0.94034 1.04502 1.19180 0.93035 0.88690 0.92816 1.59135 1.26937 1.31336 1.02052 1.19383 0.91307 0.93606 0.85413 1.21370 0.93995 1.48348 0.91362 0.92975 1.25807 0.96709 0.95188 1.01686 1.70068 1.12906 1.51842 1.22449 0.85530 0.79167 0.78405 0.78503 1.20192 1.20075 1.18986 1.22686 0.90043 1.01822 0.94474 1.22994 1.03188 0.91375 1.02471 1.23503 0.95509 1.03846 1.02286 0.87207 0.87829 0.89345 0.81194 0.81607 0.83497 0.87728 0.97804 1.00615 0.92751 0.86030 0.85734 0.91418 0.90940 0.86406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.48 10.19 71.24 0.73 -3.75 16 2 C 0.37 13.79 6.87 27.88 0.19 13.98 16 3 O -0.46 -22.11 15.21 -3.14 -0.05 -22.16 16 4 C -0.18 -6.75 5.88 -20.05 -0.12 -6.87 16 5 C -0.07 -1.78 9.44 22.57 0.21 -1.56 16 6 C -0.14 -3.31 10.02 22.23 0.22 -3.09 16 7 C -0.08 -2.35 10.03 22.31 0.22 -2.13 16 8 C -0.18 -6.94 8.55 22.37 0.19 -6.74 16 9 C 0.16 6.72 3.99 38.82 0.15 6.88 16 10 N -0.48 -22.81 2.60 -674.87 -1.76 -24.56 16 11 C 0.23 12.82 3.26 85.56 0.28 13.10 16 12 C -0.51 -31.10 8.73 25.60 0.22 -30.88 16 13 H 0.05 3.22 6.84 -2.91 -0.02 3.20 16 14 C 0.00 0.23 5.46 84.65 0.46 0.69 16 15 N -0.93 -57.96 13.29 21.45 0.28 -57.67 16 16 Si 0.96 46.71 29.54 68.60 2.03 48.74 16 17 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 18 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 19 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 20 C 0.02 0.72 5.51 44.91 0.25 0.97 16 21 C -0.16 -6.07 9.98 30.59 0.31 -5.77 16 22 C -0.21 -8.03 9.51 30.59 0.29 -7.74 16 23 H 0.11 1.76 5.60 -2.39 -0.01 1.75 16 24 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.17 2.82 5.92 -2.91 -0.02 2.81 16 27 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 28 H 0.15 3.20 8.06 -2.91 -0.02 3.17 16 29 H 0.10 4.16 7.58 -2.91 -0.02 4.14 16 30 H 0.00 0.25 6.06 -2.39 -0.01 0.23 16 31 H -0.02 -1.43 6.82 -2.39 -0.02 -1.45 16 32 H 0.26 15.40 8.31 -92.70 -0.77 14.63 16 33 H 0.12 4.31 8.00 -2.39 -0.02 4.29 16 34 H 0.12 3.65 8.14 -2.39 -0.02 3.63 16 35 H 0.07 2.95 7.75 -2.39 -0.02 2.93 16 36 H 0.07 3.30 5.90 -2.39 -0.01 3.28 16 37 H 0.12 3.56 8.14 -2.38 -0.02 3.55 16 Total: -1.00 -77.42 306.83 5.19 -72.22 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 1.07 Total: 16.34 kcal Atomic # 6 Polarization: -36.53 SS G_CDS: 3.61 Total: -32.91 kcal Atomic # 7 Polarization: -80.76 SS G_CDS: -1.47 Total: -82.23 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -0.05 Total: -22.16 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -77.42 5.19 -72.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042531406.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.924 kcal (2) G-P(sol) polarization free energy of solvation -77.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds