Wall clock time and date at job start Mon Mar 30 2020 06:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47286 * 2 1 4 4 H 1.09005 * 109.46921 * 57.30274 * 3 2 1 5 5 C 1.47203 * 109.47285 * 177.30208 * 3 2 1 6 6 N 3.43558 * 155.07183 * 4.58564 * 2 1 3 7 7 N 1.46899 * 109.47379 * 297.30557 * 3 2 1 8 8 C 1.46898 * 111.00298 * 165.61125 * 7 3 2 9 9 C 1.50703 * 109.46682 * 293.95186 * 8 7 3 10 10 H 1.08000 * 120.00365 * 0.02562 * 9 8 7 11 11 C 1.37880 * 120.00068 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00229 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 119.99802 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47161 * 89.99578 * 13 11 9 15 15 H 1.48500 * 109.46897 * 209.99726 * 13 11 9 16 16 H 1.48501 * 109.46875 * 329.99396 * 13 11 9 17 17 C 1.46907 * 110.99586 * 289.56063 * 7 3 2 18 18 C 1.50699 * 109.46829 * 166.54140 * 17 7 3 19 19 C 1.38676 * 120.41931 * 96.41964 * 18 17 7 20 20 C 1.38621 * 118.42106 * 179.97438 * 19 18 17 21 21 C 1.38227 * 119.16463 * 0.24993 * 20 19 18 22 22 N 1.31856 * 120.75886 * 359.50140 * 21 20 19 23 23 C 1.31885 * 121.73031 * 0.49056 * 22 21 20 24 24 H 1.09006 * 109.47291 * 59.99805 * 1 2 3 25 25 H 1.09002 * 109.47131 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47150 * 299.99680 * 1 2 3 27 27 H 1.09006 * 109.47150 * 240.00320 * 2 1 3 28 28 H 1.09003 * 109.47723 * 120.00471 * 2 1 3 29 29 H 1.09000 * 109.47358 * 53.94639 * 8 7 3 30 30 H 1.08997 * 109.47181 * 173.95108 * 8 7 3 31 31 H 0.97001 * 120.00240 * 180.02562 * 12 11 9 32 32 H 1.09000 * 109.47004 * 46.54230 * 17 7 3 33 33 H 1.08997 * 109.47115 * 286.54208 * 17 7 3 34 34 H 1.07998 * 120.78637 * 359.97438 * 19 18 17 35 35 H 1.07999 * 120.42225 * 179.97438 * 20 19 18 36 36 H 1.07999 * 119.62033 * 179.74894 * 21 20 19 37 37 H 1.07994 * 119.62365 * 179.75308 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6377 1.9701 0.8649 5 6 3.5105 1.4430 0.0653 6 7 4.6454 1.4434 0.1158 7 7 1.6042 2.1160 -1.2306 8 6 1.7716 3.5713 -1.1219 9 6 0.8357 4.1072 -0.0693 10 1 0.1822 3.4340 0.4657 11 6 0.8143 5.4569 0.2116 12 7 -0.0028 5.9247 1.1298 13 14 1.9450 6.6214 -0.7132 14 1 1.2559 7.1168 -1.9318 15 1 2.2935 7.7707 0.1603 16 1 3.1844 5.9023 -1.1030 17 6 2.3202 1.5897 -2.4005 18 6 1.6319 2.0501 -3.6596 19 6 2.0858 3.1710 -4.3382 20 6 1.4221 3.5573 -5.4923 21 6 0.3344 2.8206 -5.9224 22 7 -0.0665 1.7570 -5.2541 23 6 0.5409 1.3602 -4.1528 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 2.8004 3.7990 -0.8431 30 1 1.5438 4.0359 -2.0812 31 1 -0.0181 6.8743 1.3271 32 1 2.3226 0.5003 -2.3652 33 1 3.3469 1.9557 -2.3930 34 1 2.9361 3.7298 -3.9762 35 1 1.7478 4.4254 -6.0460 36 1 -0.1907 3.1173 -6.8183 37 1 0.1813 0.4862 -3.6301 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043556151.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:08 Heat of formation + Delta-G solvation = 65.850568 kcal Electronic energy + Delta-G solvation = -19372.200011 eV Core-core repulsion = 16535.723586 eV Total energy + Delta-G solvation = -2836.476425 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.08373 -38.42121 -35.42817 -33.46607 -32.87607 -31.86721 -31.19446 -28.18210 -27.04258 -24.58654 -23.39083 -22.02950 -21.60892 -20.55273 -17.62494 -16.89530 -16.34915 -16.23955 -15.93380 -14.95921 -14.60607 -14.15281 -13.71828 -13.54809 -13.18210 -13.10719 -12.91657 -12.84761 -12.73634 -12.38001 -12.24483 -11.76912 -11.65666 -11.25912 -11.10317 -10.86216 -10.68807 -10.57392 -10.30123 -10.03929 -9.58209 -9.42328 -9.24156 -8.77562 -8.67843 -7.92173 -6.16646 -4.15194 1.30707 1.48428 3.05859 3.12779 3.20057 3.27743 3.29379 3.95917 4.28485 4.32109 4.52567 4.66164 4.95020 5.02519 5.14662 5.18974 5.21664 5.33337 5.38457 5.48014 5.63907 5.75541 5.84866 5.96636 6.07249 6.07737 6.24230 6.28975 6.45238 6.49055 6.60277 6.70582 6.79563 6.89507 7.34680 7.53682 7.69970 7.88059 8.16540 8.46105 8.89993 9.44478 10.95693 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.012320 B = 0.009678 C = 0.006898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.171997 B = 2892.561710 C = 4058.094918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.106 4.106 3 C 0.175 3.825 4 H 0.143 0.857 5 C 0.192 3.808 6 N -0.454 5.454 7 N -0.492 5.492 8 C 0.154 3.846 9 C -0.515 4.515 10 H 0.087 0.913 11 C 0.075 3.925 12 N -0.893 5.893 13 Si 0.866 3.134 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.269 1.269 17 C 0.083 3.917 18 C -0.113 4.113 19 C -0.068 4.068 20 C -0.175 4.175 21 C 0.091 3.909 22 N -0.488 5.488 23 C 0.121 3.879 24 H 0.074 0.926 25 H 0.046 0.954 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.067 0.933 29 H -0.009 1.009 30 H 0.034 0.966 31 H 0.265 0.735 32 H 0.085 0.915 33 H 0.038 0.962 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.151 0.849 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.683 -9.009 -8.953 12.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.145 4.145 3 C 0.063 3.937 4 H 0.160 0.840 5 C -0.128 4.128 6 N -0.132 5.132 7 N -0.215 5.215 8 C 0.028 3.972 9 C -0.553 4.553 10 H 0.105 0.895 11 C -0.128 4.128 12 N -0.531 5.531 13 Si 0.693 3.307 14 H -0.200 1.200 15 H -0.210 1.210 16 H -0.194 1.194 17 C -0.045 4.045 18 C -0.115 4.115 19 C -0.094 4.094 20 C -0.195 4.195 21 C -0.066 4.066 22 N -0.197 5.197 23 C -0.036 4.036 24 H 0.093 0.907 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.009 0.991 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.104 0.896 33 H 0.057 0.943 34 H 0.145 0.855 35 H 0.148 0.852 36 H 0.168 0.832 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.090 -9.387 -9.158 13.280 hybrid contribution 1.828 1.774 -0.009 2.547 sum 3.918 -7.614 -9.167 12.544 Atomic orbital electron populations 1.21627 0.93607 1.00624 1.03992 1.21535 0.98022 0.93103 1.01882 1.19926 0.78578 0.97501 0.97712 0.84001 1.30980 0.96773 0.92297 0.92727 1.81060 1.13794 1.09414 1.08929 1.62414 1.52834 1.07425 0.98807 1.20382 0.95878 0.82394 0.98569 1.20941 1.21554 0.93420 1.19353 0.89477 1.24829 0.95115 0.97992 0.94822 1.69863 1.37160 1.14208 1.31879 0.87003 0.81883 0.81378 0.80461 1.19962 1.21019 1.19371 1.21125 0.94677 1.00138 0.88584 1.20681 0.97744 0.96364 0.96726 1.21535 0.99071 0.94885 0.93925 1.22059 0.98010 1.01476 0.97909 1.22655 0.94025 0.91149 0.98782 1.67676 1.29620 1.14737 1.07633 1.22569 0.90881 0.98772 0.91410 0.90727 0.93499 0.92215 0.91873 0.91482 0.99094 0.94800 0.92499 0.89633 0.94340 0.85451 0.85191 0.83206 0.82696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.78 37.15 0.36 -1.36 16 2 C -0.11 -1.30 5.34 -26.74 -0.14 -1.44 16 3 C 0.18 2.81 2.05 -70.50 -0.14 2.66 16 4 H 0.14 2.53 6.60 -51.93 -0.34 2.19 16 5 C 0.19 3.36 12.33 -20.76 -0.26 3.10 16 6 N -0.45 -8.72 18.54 42.15 0.78 -7.94 16 7 N -0.49 -8.63 3.73 -232.90 -0.87 -9.50 16 8 C 0.15 3.36 3.53 -4.98 -0.02 3.34 16 9 C -0.51 -13.25 8.86 -34.44 -0.31 -13.56 16 10 H 0.09 2.37 7.48 -52.49 -0.39 1.98 16 11 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 12 N -0.89 -25.97 13.96 55.43 0.77 -25.19 16 13 Si 0.87 20.75 27.47 -169.99 -4.67 16.08 16 14 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 17 C 0.08 1.26 4.20 -4.97 -0.02 1.24 16 18 C -0.11 -1.71 4.84 -104.48 -0.51 -2.22 16 19 C -0.07 -1.01 8.45 -39.28 -0.33 -1.34 16 20 C -0.17 -2.32 10.11 -39.44 -0.40 -2.72 16 21 C 0.09 1.22 11.18 -17.55 -0.20 1.02 16 22 N -0.49 -7.40 10.36 -13.25 -0.14 -7.54 16 23 C 0.12 1.77 10.89 -17.55 -0.19 1.58 16 24 H 0.07 1.02 7.68 -51.93 -0.40 0.62 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.70 6.40 -51.93 -0.33 0.36 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H -0.01 -0.20 6.50 -51.93 -0.34 -0.54 16 30 H 0.03 0.76 5.52 -51.93 -0.29 0.47 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.09 1.09 6.19 -51.93 -0.32 0.77 16 33 H 0.04 0.62 7.31 -51.93 -0.38 0.24 16 34 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 35 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 36 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 37 H 0.16 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 310.47 15.07 4.68 4.68 Total: -1.00 -30.18 310.47 -6.60 -36.78 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -4.92 Total: 0.38 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -2.24 Total: -7.75 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: 0.55 Total: -50.17 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.67 Total: 16.08 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.18 -6.60 -36.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043556151.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.632 kcal (2) G-P(sol) polarization free energy of solvation -30.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds