Wall clock time and date at job start Mon Mar 30 2020 06:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47286 * 2 1 4 4 H 1.09005 * 109.46921 * 57.30274 * 3 2 1 5 5 C 1.47203 * 109.47285 * 177.30208 * 3 2 1 6 6 N 3.43558 * 155.07183 * 4.58564 * 2 1 3 7 7 N 1.46899 * 109.47379 * 297.30557 * 3 2 1 8 8 C 1.46898 * 111.00298 * 165.61125 * 7 3 2 9 9 C 1.50703 * 109.46682 * 293.95186 * 8 7 3 10 10 H 1.08000 * 120.00365 * 0.02562 * 9 8 7 11 11 C 1.37880 * 120.00068 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00229 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 119.99802 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47161 * 89.99578 * 13 11 9 15 15 H 1.48500 * 109.46897 * 209.99726 * 13 11 9 16 16 H 1.48501 * 109.46875 * 329.99396 * 13 11 9 17 17 C 1.46907 * 110.99586 * 289.56063 * 7 3 2 18 18 C 1.50699 * 109.46829 * 166.54140 * 17 7 3 19 19 C 1.38676 * 120.41931 * 96.41964 * 18 17 7 20 20 C 1.38621 * 118.42106 * 179.97438 * 19 18 17 21 21 C 1.38227 * 119.16463 * 0.24993 * 20 19 18 22 22 N 1.31856 * 120.75886 * 359.50140 * 21 20 19 23 23 C 1.31885 * 121.73031 * 0.49056 * 22 21 20 24 24 H 1.09006 * 109.47291 * 59.99805 * 1 2 3 25 25 H 1.09002 * 109.47131 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47150 * 299.99680 * 1 2 3 27 27 H 1.09006 * 109.47150 * 240.00320 * 2 1 3 28 28 H 1.09003 * 109.47723 * 120.00471 * 2 1 3 29 29 H 1.09000 * 109.47358 * 53.94639 * 8 7 3 30 30 H 1.08997 * 109.47181 * 173.95108 * 8 7 3 31 31 H 0.97001 * 120.00240 * 180.02562 * 12 11 9 32 32 H 1.09000 * 109.47004 * 46.54230 * 17 7 3 33 33 H 1.08997 * 109.47115 * 286.54208 * 17 7 3 34 34 H 1.07998 * 120.78637 * 359.97438 * 19 18 17 35 35 H 1.07999 * 120.42225 * 179.97438 * 20 19 18 36 36 H 1.07999 * 119.62033 * 179.74894 * 21 20 19 37 37 H 1.07994 * 119.62365 * 179.75308 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6377 1.9701 0.8649 5 6 3.5105 1.4430 0.0653 6 7 4.6454 1.4434 0.1158 7 7 1.6042 2.1160 -1.2306 8 6 1.7716 3.5713 -1.1219 9 6 0.8357 4.1072 -0.0693 10 1 0.1822 3.4340 0.4657 11 6 0.8143 5.4569 0.2116 12 7 -0.0028 5.9247 1.1298 13 14 1.9450 6.6214 -0.7132 14 1 1.2559 7.1168 -1.9318 15 1 2.2935 7.7707 0.1603 16 1 3.1844 5.9023 -1.1030 17 6 2.3202 1.5897 -2.4005 18 6 1.6319 2.0501 -3.6596 19 6 2.0858 3.1710 -4.3382 20 6 1.4221 3.5573 -5.4923 21 6 0.3344 2.8206 -5.9224 22 7 -0.0665 1.7570 -5.2541 23 6 0.5409 1.3602 -4.1528 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 2.8004 3.7990 -0.8431 30 1 1.5438 4.0359 -2.0812 31 1 -0.0181 6.8743 1.3271 32 1 2.3226 0.5003 -2.3652 33 1 3.3469 1.9557 -2.3930 34 1 2.9361 3.7298 -3.9762 35 1 1.7478 4.4254 -6.0460 36 1 -0.1907 3.1173 -6.8183 37 1 0.1813 0.4862 -3.6301 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043556151.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:07 Heat of formation + Delta-G solvation = 46.974677 kcal Electronic energy + Delta-G solvation = -19373.018531 eV Core-core repulsion = 16535.723586 eV Total energy + Delta-G solvation = -2837.294945 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.21146 -39.75153 -36.89175 -34.90216 -34.50041 -33.05220 -32.46950 -29.85773 -28.23834 -26.04382 -24.49619 -23.46359 -22.84237 -21.88492 -19.32542 -18.14545 -17.86851 -17.48393 -17.11549 -16.41470 -16.07228 -15.60797 -15.03611 -14.71633 -14.69836 -14.39401 -14.37992 -14.06986 -13.98096 -13.84113 -13.74660 -13.24572 -12.87834 -12.65507 -12.54557 -12.36265 -12.16688 -11.96177 -11.70609 -11.55453 -11.29127 -10.79335 -10.65620 -10.36588 -9.86568 -9.40197 -8.27458 -6.28292 0.23228 0.38804 1.28915 1.32164 1.38387 1.63944 1.71638 2.31292 2.79430 2.95208 3.07250 3.24449 3.62168 3.85987 3.92489 4.09360 4.13256 4.17201 4.30608 4.41746 4.49757 4.68404 4.76482 4.77651 4.85486 4.94326 5.00881 5.09824 5.22295 5.29962 5.36849 5.43459 5.52544 5.77847 5.84014 5.88969 6.11514 6.46804 6.49809 6.79742 7.09948 7.34436 8.87777 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.012320 B = 0.009678 C = 0.006898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.171997 B = 2892.561710 C = 4058.094918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.097 4.097 3 C 0.175 3.825 4 H 0.120 0.880 5 C 0.206 3.794 6 N -0.482 5.482 7 N -0.492 5.492 8 C 0.167 3.833 9 C -0.506 4.506 10 H 0.063 0.937 11 C 0.020 3.980 12 N -0.938 5.938 13 Si 0.920 3.080 14 H -0.264 1.264 15 H -0.286 1.286 16 H -0.261 1.261 17 C 0.088 3.912 18 C -0.128 4.128 19 C -0.087 4.087 20 C -0.174 4.174 21 C 0.087 3.913 22 N -0.508 5.508 23 C 0.115 3.885 24 H 0.058 0.942 25 H 0.074 0.926 26 H 0.043 0.957 27 H 0.083 0.917 28 H 0.086 0.914 29 H -0.022 1.022 30 H 0.034 0.966 31 H 0.265 0.735 32 H 0.114 0.886 33 H 0.028 0.972 34 H 0.126 0.874 35 H 0.157 0.843 36 H 0.181 0.819 37 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.064 -10.017 -10.653 14.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.136 4.136 3 C 0.063 3.937 4 H 0.138 0.862 5 C -0.113 4.113 6 N -0.160 5.160 7 N -0.214 5.214 8 C 0.040 3.960 9 C -0.545 4.545 10 H 0.081 0.919 11 C -0.179 4.179 12 N -0.579 5.579 13 Si 0.746 3.254 14 H -0.189 1.189 15 H -0.212 1.212 16 H -0.185 1.185 17 C -0.039 4.039 18 C -0.131 4.131 19 C -0.113 4.113 20 C -0.194 4.194 21 C -0.070 4.070 22 N -0.217 5.217 23 C -0.042 4.042 24 H 0.078 0.922 25 H 0.093 0.907 26 H 0.062 0.938 27 H 0.102 0.898 28 H 0.104 0.896 29 H -0.004 1.004 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.132 0.868 33 H 0.046 0.954 34 H 0.144 0.856 35 H 0.175 0.825 36 H 0.198 0.802 37 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 2.478 -10.419 -10.873 15.262 hybrid contribution 1.661 2.031 0.506 2.672 sum 4.140 -8.388 -10.367 13.963 Atomic orbital electron populations 1.21586 0.93508 1.01920 1.02433 1.21557 0.97873 0.90328 1.03850 1.20071 0.77694 0.99662 0.96261 0.86215 1.31196 0.96843 0.91365 0.91867 1.81072 1.14636 1.10514 1.09801 1.62327 1.53665 1.05065 1.00341 1.20057 0.93745 0.85291 0.96912 1.21207 1.20941 0.92988 1.19315 0.91932 1.25575 0.96629 0.99880 0.95793 1.69994 1.39382 1.14532 1.33971 0.86111 0.80449 0.79372 0.79504 1.18897 1.21173 1.18500 1.21164 0.93660 1.01634 0.87461 1.20725 0.98419 0.97015 0.96902 1.21747 0.99533 0.95159 0.94909 1.22372 0.97542 1.02104 0.97369 1.23210 0.93981 0.90408 0.99367 1.67729 1.30175 1.15693 1.08089 1.22837 0.90617 0.99260 0.91471 0.92248 0.90742 0.93826 0.89804 0.89562 1.00430 0.94789 0.92589 0.86792 0.95368 0.85625 0.82542 0.80249 0.81081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 9.78 71.98 0.70 -2.40 16 2 C -0.10 -2.15 5.34 30.59 0.16 -1.99 16 3 C 0.18 5.48 2.05 43.11 0.09 5.57 16 4 H 0.12 4.34 6.60 -2.38 -0.02 4.33 16 5 C 0.21 7.02 12.33 89.44 1.10 8.12 16 6 N -0.48 -18.07 18.54 20.01 0.37 -17.70 16 7 N -0.49 -16.83 3.73 -890.76 -3.32 -20.15 16 8 C 0.17 7.24 3.53 85.56 0.30 7.54 16 9 C -0.51 -26.47 8.86 25.60 0.23 -26.24 16 10 H 0.06 3.51 7.48 -2.91 -0.02 3.49 16 11 C 0.02 1.08 5.47 84.66 0.46 1.55 16 12 N -0.94 -55.81 13.96 21.45 0.30 -55.51 16 13 Si 0.92 42.79 27.47 68.60 1.88 44.68 16 14 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 15 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 16 H -0.26 -11.65 6.54 99.48 0.65 -11.00 16 17 C 0.09 2.53 4.20 85.56 0.36 2.89 16 18 C -0.13 -3.68 4.84 -19.77 -0.10 -3.78 16 19 C -0.09 -2.46 8.45 22.47 0.19 -2.27 16 20 C -0.17 -4.21 10.11 22.36 0.23 -3.98 16 21 C 0.09 2.11 11.18 84.69 0.95 3.06 16 22 N -0.51 -14.37 10.36 -195.84 -2.03 -16.40 16 23 C 0.12 3.15 10.89 84.67 0.92 4.07 16 24 H 0.06 1.53 7.68 -2.38 -0.02 1.52 16 25 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 27 H 0.08 1.55 6.40 -2.38 -0.02 1.53 16 28 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 29 H -0.02 -1.01 6.50 -2.39 -0.02 -1.03 16 30 H 0.03 1.50 5.52 -2.39 -0.01 1.48 16 31 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 32 H 0.11 2.58 6.19 -2.39 -0.01 2.56 16 33 H 0.03 0.88 7.31 -2.39 -0.02 0.86 16 34 H 0.13 3.51 8.06 -2.91 -0.02 3.49 16 35 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 36 H 0.18 3.11 8.06 -2.91 -0.02 3.09 16 37 H 0.17 3.91 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -65.25 310.47 3.81 -61.44 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: 1.01 Total: 11.51 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: 5.60 Total: -7.87 kcal Atomic # 7 Polarization: -105.07 SS G_CDS: -4.68 Total: -109.76 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 1.88 Total: 44.68 kcal Total: -65.25 3.81 -61.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043556151.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.414 kcal (2) G-P(sol) polarization free energy of solvation -65.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds