Wall clock time and date at job start Mon Mar 30 2020 06:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47225 * 2 1 4 4 C 1.52995 * 109.47361 * 120.00426 * 2 1 3 5 5 N 1.46903 * 109.47181 * 65.40816 * 4 2 1 6 6 C 1.46900 * 111.00100 * 75.78470 * 5 4 2 7 7 C 1.50696 * 109.47061 * 64.40728 * 6 5 4 8 8 H 1.08003 * 120.00282 * 356.84896 * 7 6 5 9 9 C 1.37879 * 120.00034 * 176.85603 * 7 6 5 10 10 N 1.31511 * 120.00012 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00022 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47204 * 0.02562 * 11 9 7 13 13 H 1.48507 * 109.46728 * 119.99984 * 11 9 7 14 14 H 1.48494 * 109.47509 * 239.99813 * 11 9 7 15 15 C 1.38396 * 110.99952 * 199.74312 * 5 4 2 16 16 N 1.32384 * 119.82626 * 336.55363 * 15 5 4 17 17 C 1.31890 * 121.78175 * 179.97438 * 16 15 5 18 18 C 1.38331 * 121.22125 * 0.02562 * 17 16 15 19 19 C 1.38373 * 119.50416 * 359.97438 * 18 17 16 20 20 C 1.39972 * 118.36626 * 359.73001 * 19 18 17 21 21 C 1.43202 * 120.60948 * 180.28487 * 20 19 18 22 22 N 5.39095 * 67.21790 * 169.79825 * 2 1 3 23 23 H 1.08996 * 109.47405 * 59.99134 * 1 2 3 24 24 H 1.09000 * 109.47220 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46714 * 299.99266 * 1 2 3 26 26 H 1.08999 * 109.46932 * 240.00508 * 2 1 3 27 27 H 1.09004 * 109.47168 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47636 * 300.00725 * 3 2 1 29 29 H 1.08999 * 109.46751 * 60.00398 * 3 2 1 30 30 H 1.08993 * 109.47268 * 305.40530 * 4 2 1 31 31 H 1.08997 * 109.47110 * 185.40494 * 4 2 1 32 32 H 1.08995 * 109.47132 * 304.40305 * 6 5 4 33 33 H 1.09003 * 109.46681 * 184.40646 * 6 5 4 34 34 H 0.97000 * 120.00234 * 180.02562 * 10 9 7 35 35 H 1.08000 * 119.38916 * 179.97438 * 17 16 15 36 36 H 1.08001 * 120.24826 * 179.97438 * 18 17 16 37 37 H 1.08000 * 120.81752 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.6599 -2.1389 1.1856 6 6 2.5134 -2.8710 0.2403 7 6 3.9349 -2.8674 0.7406 8 1 4.1892 -2.3281 1.6411 9 6 4.9110 -3.5525 0.0486 10 7 4.6014 -4.2096 -1.0478 11 14 6.6732 -3.5475 0.6683 12 1 6.7582 -2.7412 1.9123 13 1 7.1022 -4.9408 0.9517 14 1 7.5601 -2.9573 -0.3662 15 6 1.6986 -2.7195 2.4412 16 7 2.4579 -2.1908 3.3880 17 6 2.5235 -2.7120 4.5978 18 6 1.7978 -3.8411 4.9324 19 6 0.9870 -4.4364 3.9821 20 6 0.9269 -3.8639 2.7063 21 6 0.0987 -4.4369 1.6882 22 7 -0.5575 -4.8918 0.8803 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8900 27 1 3.1301 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.5999 -0.2665 2.1365 31 1 3.1257 -0.6382 1.2988 32 1 2.4707 -2.3889 -0.7363 33 1 2.1612 -3.8989 0.1539 34 1 5.2880 -4.6919 -1.5344 35 1 3.1560 -2.2491 5.3408 36 1 1.8636 -4.2550 5.9277 37 1 0.4110 -5.3184 4.2205 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044289803.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:22 Heat of formation + Delta-G solvation = 64.479937 kcal Electronic energy + Delta-G solvation = -19550.654731 eV Core-core repulsion = 16714.118871 eV Total energy + Delta-G solvation = -2836.535860 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.23778 -37.25005 -35.97967 -34.22506 -32.60144 -32.12839 -29.90934 -27.13973 -26.66456 -25.16629 -24.16793 -22.98649 -21.12625 -19.19038 -18.50269 -16.85768 -16.56152 -15.92955 -15.09239 -14.73025 -14.28068 -14.08412 -13.55684 -13.42373 -13.17838 -12.77163 -12.61382 -12.44005 -12.27487 -12.05217 -11.90458 -11.77543 -11.34845 -11.10235 -11.06885 -10.66485 -10.54475 -10.36938 -10.07369 -9.95077 -9.82738 -9.53560 -9.09094 -8.72783 -8.51954 -7.51831 -6.12321 -4.20039 1.07776 1.60519 3.22930 3.24024 3.31652 3.36171 3.50828 4.18496 4.35220 4.40278 4.47443 4.95240 5.07066 5.21320 5.39257 5.41807 5.45746 5.50850 5.75405 5.78425 6.00339 6.11347 6.19504 6.22141 6.24408 6.29507 6.38611 6.51828 6.67100 6.75870 6.86725 6.93418 7.07116 7.36312 7.57851 7.83567 7.99378 8.04030 8.12931 8.43047 8.90196 9.47005 10.94616 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.011995 B = 0.010027 C = 0.007572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.796703 B = 2791.739195 C = 3696.910039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.095 4.095 3 C -0.141 4.141 4 C 0.075 3.925 5 N -0.494 5.494 6 C 0.196 3.804 7 C -0.554 4.554 8 H 0.075 0.925 9 C 0.067 3.933 10 N -0.888 5.888 11 Si 0.891 3.109 12 H -0.271 1.271 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.404 3.596 16 N -0.508 5.508 17 C 0.147 3.853 18 C -0.216 4.216 19 C -0.016 4.016 20 C -0.095 4.095 21 C 0.280 3.720 22 N -0.430 5.430 23 H 0.041 0.959 24 H 0.061 0.939 25 H 0.043 0.957 26 H 0.076 0.924 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.036 0.964 34 H 0.263 0.737 35 H 0.154 0.846 36 H 0.135 0.865 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.018 5.174 10.203 12.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.114 4.114 3 C -0.199 4.199 4 C -0.052 4.052 5 N -0.212 5.212 6 C 0.074 3.926 7 C -0.592 4.592 8 H 0.093 0.907 9 C -0.136 4.136 10 N -0.526 5.526 11 Si 0.719 3.281 12 H -0.195 1.195 13 H -0.210 1.210 14 H -0.209 1.209 15 C 0.170 3.830 16 N -0.220 5.220 17 C -0.013 4.013 18 C -0.237 4.237 19 C -0.044 4.044 20 C -0.103 4.103 21 C -0.035 4.035 22 N -0.105 5.105 23 H 0.061 0.939 24 H 0.080 0.920 25 H 0.062 0.938 26 H 0.094 0.906 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.171 0.829 36 H 0.153 0.847 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.958 5.099 8.328 11.439 hybrid contribution 1.689 -0.691 0.967 2.065 sum -4.269 4.408 9.294 11.137 Atomic orbital electron populations 1.21723 0.95642 1.02006 0.99947 1.21122 0.95612 0.95263 0.99404 1.21757 1.01135 0.96139 1.00832 1.21970 1.00890 0.85862 0.96479 1.59903 1.52354 1.04705 1.04218 1.19950 0.89170 0.93466 0.90024 1.21879 0.93472 1.32681 1.11214 0.90651 1.24941 0.99073 0.94887 0.94689 1.69959 1.33810 1.32302 1.16572 0.86538 0.84707 0.77832 0.79045 1.19505 1.21010 1.20889 1.19826 0.85204 0.87214 0.90714 1.68080 1.17511 1.34490 1.01949 1.22767 0.94089 0.91799 0.92691 1.21763 1.01800 0.99367 1.00763 1.21388 0.95176 0.97310 0.90536 1.16533 1.02303 0.99675 0.91819 1.25080 0.92774 0.92865 0.92775 1.81117 1.11279 1.09511 1.08641 0.93941 0.91964 0.93770 0.90574 0.92619 0.93171 0.93257 0.92161 0.91369 0.93711 0.94574 0.92726 0.82923 0.84666 0.84540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.08 37.16 0.34 -1.77 16 2 C -0.10 -1.61 2.98 -90.62 -0.27 -1.88 16 3 C -0.14 -2.00 9.19 37.16 0.34 -1.66 16 4 C 0.08 1.42 3.47 -3.82 -0.01 1.41 16 5 N -0.49 -10.30 3.57 -174.31 -0.62 -10.92 16 6 C 0.20 4.88 4.82 -4.98 -0.02 4.86 16 7 C -0.55 -14.66 7.55 -34.44 -0.26 -14.92 16 8 H 0.08 1.99 5.90 -52.48 -0.31 1.68 16 9 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 10 N -0.89 -25.73 13.29 55.43 0.74 -24.99 16 11 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 12 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 C 0.40 7.91 4.93 -155.09 -0.76 7.15 16 16 N -0.51 -9.23 7.99 -12.17 -0.10 -9.33 16 17 C 0.15 2.07 11.16 -17.49 -0.20 1.88 16 18 C -0.22 -2.62 10.09 -39.50 -0.40 -3.01 16 19 C -0.02 -0.22 9.90 -38.88 -0.39 -0.60 16 20 C -0.09 -1.70 5.71 -106.45 -0.61 -2.31 16 21 C 0.28 5.48 13.71 -22.48 -0.31 5.17 16 22 N -0.43 -8.98 18.54 41.83 0.78 -8.21 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 1.08 7.76 -51.93 -0.40 0.68 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.08 1.46 6.71 -51.93 -0.35 1.11 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 1.07 7.61 -51.93 -0.40 0.68 16 31 H 0.07 1.44 6.40 -51.93 -0.33 1.11 16 32 H 0.04 1.19 6.68 -51.93 -0.35 0.84 16 33 H 0.04 1.00 7.08 -51.93 -0.37 0.63 16 34 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.14 1.46 8.06 -52.49 -0.42 1.03 16 LS Contribution 313.62 15.07 4.73 4.73 Total: -1.00 -30.11 313.62 -7.17 -37.28 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -5.02 Total: -0.77 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -2.64 Total: -3.94 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: 0.79 Total: -53.45 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.11 -7.17 -37.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044289803.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.758 kcal (2) G-P(sol) polarization free energy of solvation -30.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds