Wall clock time and date at job start Mon Mar 30 2020 06:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47225 * 2 1 4 4 C 1.52995 * 109.47361 * 120.00426 * 2 1 3 5 5 N 1.46903 * 109.47181 * 65.40816 * 4 2 1 6 6 C 1.46900 * 111.00100 * 75.78470 * 5 4 2 7 7 C 1.50696 * 109.47061 * 64.40728 * 6 5 4 8 8 H 1.08003 * 120.00282 * 356.84896 * 7 6 5 9 9 C 1.37879 * 120.00034 * 176.85603 * 7 6 5 10 10 N 1.31511 * 120.00012 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00022 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47204 * 0.02562 * 11 9 7 13 13 H 1.48507 * 109.46728 * 119.99984 * 11 9 7 14 14 H 1.48494 * 109.47509 * 239.99813 * 11 9 7 15 15 C 1.38396 * 110.99952 * 199.74312 * 5 4 2 16 16 N 1.32384 * 119.82626 * 336.55363 * 15 5 4 17 17 C 1.31890 * 121.78175 * 179.97438 * 16 15 5 18 18 C 1.38331 * 121.22125 * 0.02562 * 17 16 15 19 19 C 1.38373 * 119.50416 * 359.97438 * 18 17 16 20 20 C 1.39972 * 118.36626 * 359.73001 * 19 18 17 21 21 C 1.43202 * 120.60948 * 180.28487 * 20 19 18 22 22 N 5.39095 * 67.21790 * 169.79825 * 2 1 3 23 23 H 1.08996 * 109.47405 * 59.99134 * 1 2 3 24 24 H 1.09000 * 109.47220 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46714 * 299.99266 * 1 2 3 26 26 H 1.08999 * 109.46932 * 240.00508 * 2 1 3 27 27 H 1.09004 * 109.47168 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47636 * 300.00725 * 3 2 1 29 29 H 1.08999 * 109.46751 * 60.00398 * 3 2 1 30 30 H 1.08993 * 109.47268 * 305.40530 * 4 2 1 31 31 H 1.08997 * 109.47110 * 185.40494 * 4 2 1 32 32 H 1.08995 * 109.47132 * 304.40305 * 6 5 4 33 33 H 1.09003 * 109.46681 * 184.40646 * 6 5 4 34 34 H 0.97000 * 120.00234 * 180.02562 * 10 9 7 35 35 H 1.08000 * 119.38916 * 179.97438 * 17 16 15 36 36 H 1.08001 * 120.24826 * 179.97438 * 18 17 16 37 37 H 1.08000 * 120.81752 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.6599 -2.1389 1.1856 6 6 2.5134 -2.8710 0.2403 7 6 3.9349 -2.8674 0.7406 8 1 4.1892 -2.3281 1.6411 9 6 4.9110 -3.5525 0.0486 10 7 4.6014 -4.2096 -1.0478 11 14 6.6732 -3.5475 0.6683 12 1 6.7582 -2.7412 1.9123 13 1 7.1022 -4.9408 0.9517 14 1 7.5601 -2.9573 -0.3662 15 6 1.6986 -2.7195 2.4412 16 7 2.4579 -2.1908 3.3880 17 6 2.5235 -2.7120 4.5978 18 6 1.7978 -3.8411 4.9324 19 6 0.9870 -4.4364 3.9821 20 6 0.9269 -3.8639 2.7063 21 6 0.0987 -4.4369 1.6882 22 7 -0.5575 -4.8918 0.8803 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8900 27 1 3.1301 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.5999 -0.2665 2.1365 31 1 3.1257 -0.6382 1.2988 32 1 2.4707 -2.3889 -0.7363 33 1 2.1612 -3.8989 0.1539 34 1 5.2880 -4.6919 -1.5344 35 1 3.1560 -2.2491 5.3408 36 1 1.8636 -4.2550 5.9277 37 1 0.4110 -5.3184 4.2205 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044289803.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:21 Heat of formation + Delta-G solvation = 46.979173 kcal Electronic energy + Delta-G solvation = -19551.413621 eV Core-core repulsion = 16714.118871 eV Total energy + Delta-G solvation = -2837.294750 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.57715 -38.69860 -37.51258 -35.70058 -34.52586 -33.42340 -31.28520 -28.99716 -27.91128 -26.67935 -25.51330 -24.64506 -22.54963 -20.67582 -19.81921 -18.66384 -18.03468 -17.38215 -16.82032 -16.02354 -15.98377 -15.46108 -14.91287 -14.86153 -14.60957 -14.43291 -13.96484 -13.89855 -13.74396 -13.54582 -13.37917 -13.04118 -12.95783 -12.85644 -12.60517 -12.45582 -12.13461 -11.93293 -11.80194 -11.56663 -11.36053 -10.76863 -10.65297 -10.39439 -10.16112 -9.06968 -8.20237 -6.36625 -0.19095 0.41893 1.34964 1.36842 1.49307 1.72105 2.09849 2.36201 2.80612 3.00430 3.08164 3.16119 3.77414 4.02149 4.05418 4.16759 4.20396 4.35928 4.43955 4.65692 4.77065 4.80943 4.86824 4.92577 5.02988 5.11428 5.15816 5.19847 5.22005 5.28119 5.32968 5.49616 5.53278 5.67264 5.73273 5.85808 6.07058 6.45659 6.58573 6.81288 7.14486 7.34467 8.85323 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.011995 B = 0.010027 C = 0.007572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.796703 B = 2791.739195 C = 3696.910039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.096 4.096 3 C -0.133 4.133 4 C 0.086 3.914 5 N -0.498 5.498 6 C 0.218 3.782 7 C -0.550 4.550 8 H 0.077 0.923 9 C 0.013 3.987 10 N -0.929 5.929 11 Si 0.957 3.043 12 H -0.261 1.261 13 H -0.281 1.281 14 H -0.280 1.280 15 C 0.371 3.629 16 N -0.533 5.533 17 C 0.140 3.860 18 C -0.187 4.187 19 C -0.009 4.009 20 C -0.121 4.121 21 C 0.292 3.708 22 N -0.470 5.470 23 H 0.058 0.942 24 H 0.035 0.965 25 H 0.061 0.939 26 H 0.042 0.958 27 H 0.047 0.953 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.041 0.959 32 H 0.015 0.985 33 H 0.000 1.000 34 H 0.264 0.736 35 H 0.191 0.809 36 H 0.188 0.812 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.459 5.824 13.590 15.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.115 4.115 3 C -0.191 4.191 4 C -0.041 4.041 5 N -0.216 5.216 6 C 0.095 3.905 7 C -0.588 4.588 8 H 0.095 0.905 9 C -0.187 4.187 10 N -0.568 5.568 11 Si 0.783 3.217 12 H -0.185 1.185 13 H -0.207 1.207 14 H -0.206 1.206 15 C 0.138 3.862 16 N -0.246 5.246 17 C -0.020 4.020 18 C -0.206 4.206 19 C -0.037 4.037 20 C -0.129 4.129 21 C -0.023 4.023 22 N -0.147 5.147 23 H 0.077 0.923 24 H 0.054 0.946 25 H 0.080 0.920 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.059 0.941 32 H 0.033 0.967 33 H 0.019 0.981 34 H 0.073 0.927 35 H 0.208 0.792 36 H 0.205 0.795 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -5.413 5.760 11.752 14.163 hybrid contribution 1.495 -0.899 0.089 1.747 sum -3.918 4.861 11.841 13.386 Atomic orbital electron populations 1.21620 0.94332 1.00806 1.01602 1.21126 0.96712 0.96598 0.97086 1.21693 1.00616 0.94199 1.02561 1.21901 0.99173 0.85248 0.97815 1.59763 1.51749 1.05129 1.04988 1.19400 0.89459 0.91612 0.90069 1.22085 0.94114 1.31771 1.10863 0.90512 1.25805 1.03329 0.94685 0.94856 1.70096 1.35123 1.33576 1.18045 0.85503 0.79601 0.77898 0.78746 1.18466 1.20666 1.20571 1.19841 0.87112 0.88681 0.90541 1.68017 1.17823 1.35431 1.03365 1.23547 0.94245 0.92331 0.91834 1.22325 0.98639 0.97430 1.02254 1.21883 0.95161 0.97912 0.88777 1.16846 1.02840 1.00013 0.93244 1.25538 0.92194 0.92020 0.92532 1.81096 1.12964 1.11053 1.09569 0.92256 0.94577 0.92023 0.93942 0.93397 0.91534 0.91374 0.90801 0.94097 0.96681 0.98141 0.92732 0.79178 0.79477 0.81160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.93 9.08 71.98 0.65 -3.28 16 2 C -0.10 -3.35 2.98 -10.80 -0.03 -3.38 16 3 C -0.13 -3.67 9.19 71.98 0.66 -3.01 16 4 C 0.09 3.32 3.47 86.30 0.30 3.62 16 5 N -0.50 -21.64 3.57 -705.38 -2.52 -24.16 16 6 C 0.22 11.56 4.82 85.56 0.41 11.97 16 7 C -0.55 -29.97 7.55 25.60 0.19 -29.77 16 8 H 0.08 4.11 5.90 -2.91 -0.02 4.09 16 9 C 0.01 0.70 5.46 84.66 0.46 1.16 16 10 N -0.93 -55.75 13.29 21.45 0.28 -55.47 16 11 Si 0.96 43.77 29.54 68.60 2.03 45.79 16 12 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 13 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 14 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 15 C 0.37 14.56 4.93 133.62 0.66 15.22 16 16 N -0.53 -18.60 7.99 -192.43 -1.54 -20.14 16 17 C 0.14 3.40 11.16 84.71 0.95 4.34 16 18 C -0.19 -3.56 10.09 22.32 0.23 -3.34 16 19 C -0.01 -0.23 9.90 22.72 0.22 0.00 16 20 C -0.12 -4.28 5.71 -21.05 -0.12 -4.40 16 21 C 0.29 11.72 13.71 88.33 1.21 12.94 16 22 N -0.47 -20.52 18.54 19.00 0.35 -20.17 16 23 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.04 1.29 7.76 -2.39 -0.02 1.28 16 25 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 26 H 0.04 1.75 6.71 -2.39 -0.02 1.73 16 27 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 28 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.07 2.61 7.61 -2.39 -0.02 2.60 16 31 H 0.04 1.78 6.40 -2.39 -0.02 1.76 16 32 H 0.02 0.87 6.68 -2.39 -0.02 0.86 16 33 H 0.00 0.03 7.08 -2.39 -0.02 0.01 16 34 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 35 H 0.19 3.07 8.06 -2.91 -0.02 3.04 16 36 H 0.19 1.73 8.06 -2.91 -0.02 1.71 16 37 H 0.17 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -70.01 313.62 5.47 -64.55 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: 1.06 Total: 7.52 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 5.80 Total: 2.07 kcal Atomic # 7 Polarization: -116.52 SS G_CDS: -3.42 Total: -119.94 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -70.01 5.47 -64.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044289803.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.526 kcal (2) G-P(sol) polarization free energy of solvation -70.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds