Wall clock time and date at job start Mon Mar 30 2020 06:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47566 * 2 1 4 4 C 1.53001 * 109.47142 * 119.99822 * 2 1 3 5 5 N 1.46504 * 109.47543 * 174.99975 * 4 2 1 6 6 C 1.46499 * 119.99715 * 270.00636 * 5 4 2 7 7 C 1.50704 * 109.46861 * 269.99213 * 6 5 4 8 8 H 1.08006 * 120.00029 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00031 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00195 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99971 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47065 * 90.00225 * 11 9 7 13 13 H 1.48501 * 109.47093 * 209.99912 * 11 9 7 14 14 H 1.48500 * 109.47333 * 330.00154 * 11 9 7 15 15 C 1.39030 * 119.99968 * 89.99655 * 5 4 2 16 16 C 1.39021 * 119.63812 * 184.99876 * 15 5 4 17 17 C 1.39615 * 118.91993 * 179.75109 * 16 15 5 18 18 C 1.43203 * 120.89379 * 180.28002 * 17 16 15 19 19 N 7.79430 * 163.65502 * 59.13525 * 2 1 3 20 20 C 1.40136 * 118.22314 * 0.25466 * 17 16 15 21 21 C 1.37871 * 119.16099 * 0.02562 * 20 17 16 22 22 N 1.31960 * 121.00672 * 0.02562 * 21 20 17 23 23 H 1.09000 * 109.47443 * 300.00230 * 1 2 3 24 24 H 1.08999 * 109.47250 * 60.00099 * 1 2 3 25 25 H 1.08993 * 109.47295 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47443 * 239.99770 * 2 1 3 27 27 H 1.09004 * 109.46589 * 59.99806 * 3 2 1 28 28 H 1.08995 * 109.47383 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.46755 * 300.00203 * 3 2 1 30 30 H 1.09007 * 109.46925 * 54.99935 * 4 2 1 31 31 H 1.09003 * 109.47535 * 295.00405 * 4 2 1 32 32 H 1.08996 * 109.47435 * 29.99517 * 6 5 4 33 33 H 1.08999 * 109.47138 * 150.00239 * 6 5 4 34 34 H 0.97001 * 120.00674 * 179.97438 * 10 9 7 35 35 H 1.08002 * 120.54385 * 0.03440 * 16 15 5 36 36 H 1.07996 * 120.41989 * 179.97438 * 20 17 16 37 37 H 1.08004 * 119.49227 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1257 -1.9920 0.5613 7 6 4.3420 -3.0660 1.5961 8 1 4.0429 -2.8973 2.6201 9 6 4.9217 -4.2639 1.2356 10 7 5.2865 -4.4691 -0.0111 11 14 5.1892 -5.5954 2.5182 12 1 3.9944 -6.4755 2.5745 13 1 6.3813 -6.4021 2.1531 14 1 5.4044 -4.9673 3.8465 15 6 4.2918 0.1800 1.7322 16 6 5.6726 0.1247 1.5811 17 6 6.4529 1.1460 2.1264 18 6 7.8784 1.1345 1.9906 19 7 9.0092 1.1253 1.8828 20 6 5.8038 2.1831 2.8097 21 6 4.4296 2.1586 2.9192 22 7 3.7231 1.1766 2.3921 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6053 -1.7198 1.2952 31 1 1.7516 -0.1583 2.1371 32 1 3.4756 -2.3722 -0.2266 33 1 5.0851 -1.7022 0.1326 34 1 5.6947 -5.3117 -0.2647 35 1 6.1340 -0.6925 1.0465 36 1 6.3728 2.9908 3.2458 37 1 3.9239 2.9549 3.4451 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044420297.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:26 Heat of formation + Delta-G solvation = 62.932716 kcal Electronic energy + Delta-G solvation = -19098.375098 eV Core-core repulsion = 16261.772145 eV Total energy + Delta-G solvation = -2836.602953 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.99939 -37.21731 -36.22847 -34.30534 -32.68057 -32.13700 -29.77410 -27.66173 -26.80171 -25.41866 -23.78278 -23.41001 -21.26865 -19.75488 -18.28638 -16.57957 -16.30675 -15.75549 -15.32875 -14.72942 -14.58732 -14.22652 -13.85311 -13.74973 -13.68296 -12.80340 -12.74885 -12.66241 -12.46913 -12.31419 -11.91395 -11.58474 -11.42665 -11.35623 -11.02236 -10.86438 -10.63760 -10.61325 -10.33921 -10.12547 -9.90254 -9.40775 -9.14108 -9.02556 -8.58726 -6.88763 -6.17118 -4.27866 1.10410 1.76046 2.82385 3.21728 3.29388 3.32282 3.35740 3.69645 4.09402 4.31155 4.39142 4.92031 5.13479 5.25373 5.29659 5.38618 5.39910 5.55116 5.61207 5.86354 5.94164 6.03240 6.05308 6.15873 6.18967 6.27311 6.34491 6.40221 6.48333 6.64621 6.69410 6.82725 7.00803 7.15500 7.61160 7.64489 7.81188 8.02621 8.20505 8.58460 8.83272 9.40015 10.85987 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.011726 B = 0.008885 C = 0.005641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.316157 B = 3150.585178 C = 4962.872519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C -0.132 4.132 4 C 0.133 3.867 5 N -0.578 5.578 6 C 0.249 3.751 7 C -0.537 4.537 8 H 0.062 0.938 9 C 0.065 3.935 10 N -0.892 5.892 11 Si 0.896 3.104 12 H -0.279 1.279 13 H -0.285 1.285 14 H -0.273 1.273 15 C 0.425 3.575 16 C -0.179 4.179 17 C 0.048 3.952 18 C 0.267 3.733 19 N -0.422 5.422 20 C -0.220 4.220 21 C 0.150 3.850 22 N -0.537 5.537 23 H 0.053 0.947 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.050 0.950 29 H 0.038 0.962 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.039 0.961 33 H 0.037 0.963 34 H 0.266 0.734 35 H 0.150 0.850 36 H 0.129 0.871 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.459 11.142 2.096 13.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.133 4.133 3 C -0.189 4.189 4 C 0.009 3.991 5 N -0.285 5.285 6 C 0.129 3.871 7 C -0.576 4.576 8 H 0.080 0.920 9 C -0.138 4.138 10 N -0.530 5.530 11 Si 0.724 3.276 12 H -0.205 1.205 13 H -0.211 1.211 14 H -0.198 1.198 15 C 0.187 3.813 16 C -0.208 4.208 17 C 0.038 3.962 18 C -0.049 4.049 19 N -0.098 5.098 20 C -0.247 4.247 21 C -0.009 4.009 22 N -0.256 5.256 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.167 0.833 36 H 0.147 0.853 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.655 10.765 1.776 12.289 hybrid contribution 0.749 -0.948 0.575 1.338 sum -4.906 9.818 2.351 11.224 Atomic orbital electron populations 1.21739 0.95340 1.01494 1.01301 1.21544 0.95166 0.97017 0.99606 1.21735 1.01069 0.95554 1.00550 1.21378 0.80065 1.00332 0.97282 1.47187 1.04479 1.19045 1.57778 1.19436 0.93862 0.80661 0.93130 1.21524 1.40991 0.99203 0.95871 0.92017 1.24938 0.95076 0.98341 0.95478 1.69912 1.41104 1.25439 1.16541 0.86517 0.77836 0.81557 0.81733 1.20481 1.21063 1.19758 1.18188 0.87416 0.87323 0.88369 1.21691 0.93285 1.00517 1.05268 1.15922 0.84244 0.96415 0.99653 1.25671 0.92651 0.93154 0.93435 1.81184 1.12104 1.08181 1.08347 1.21547 0.96057 1.00409 1.06661 1.22169 0.90060 0.94640 0.94037 1.67188 1.40606 1.03793 1.14002 0.92781 0.93104 0.92773 0.91402 0.92266 0.93060 0.94289 0.90848 0.90390 0.94284 0.94531 0.92480 0.83273 0.85319 0.82880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.19 37.15 0.34 -1.33 16 2 C -0.11 -1.64 3.13 -90.62 -0.28 -1.92 16 3 C -0.13 -1.83 7.97 37.16 0.30 -1.54 16 4 C 0.13 2.22 5.01 -4.04 -0.02 2.20 16 5 N -0.58 -11.17 2.44 -175.24 -0.43 -11.59 16 6 C 0.25 5.70 5.00 -5.19 -0.03 5.67 16 7 C -0.54 -13.77 9.39 -34.44 -0.32 -14.09 16 8 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -24.54 13.29 55.43 0.74 -23.80 16 11 Si 0.90 20.71 29.54 -169.99 -5.02 15.68 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 14 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 15 C 0.42 7.70 5.77 -155.07 -0.89 6.80 16 16 C -0.18 -3.24 9.02 -38.78 -0.35 -3.59 16 17 C 0.05 0.76 5.75 -106.74 -0.61 0.15 16 18 C 0.27 4.39 15.40 -22.47 -0.35 4.05 16 19 N -0.42 -7.57 18.54 41.83 0.78 -6.80 16 20 C -0.22 -2.85 9.85 -39.00 -0.38 -3.23 16 21 C 0.15 1.93 11.16 -17.63 -0.20 1.73 16 22 N -0.54 -8.52 7.54 -12.51 -0.09 -8.61 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 27 H 0.06 0.80 7.97 -51.93 -0.41 0.39 16 28 H 0.05 0.81 6.14 -51.93 -0.32 0.49 16 29 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 31 H 0.08 1.27 7.29 -51.93 -0.38 0.89 16 32 H 0.04 0.94 8.07 -51.93 -0.42 0.53 16 33 H 0.04 0.88 5.97 -51.93 -0.31 0.57 16 34 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.15 2.98 6.02 -52.49 -0.32 2.66 16 36 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.15 1.42 8.06 -52.48 -0.42 0.99 16 LS Contribution 317.26 15.07 4.78 4.78 Total: -1.00 -27.30 317.26 -7.23 -34.52 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -5.08 Total: -0.69 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -2.90 Total: -3.49 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: 0.99 Total: -50.81 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.30 -7.23 -34.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044420297.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.457 kcal (2) G-P(sol) polarization free energy of solvation -27.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds