Wall clock time and date at job start Mon Mar 30 2020 06:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47566 * 2 1 4 4 C 1.53001 * 109.47142 * 119.99822 * 2 1 3 5 5 N 1.46504 * 109.47543 * 174.99975 * 4 2 1 6 6 C 1.46499 * 119.99715 * 270.00636 * 5 4 2 7 7 C 1.50704 * 109.46861 * 269.99213 * 6 5 4 8 8 H 1.08006 * 120.00029 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00031 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00195 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99971 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47065 * 90.00225 * 11 9 7 13 13 H 1.48501 * 109.47093 * 209.99912 * 11 9 7 14 14 H 1.48500 * 109.47333 * 330.00154 * 11 9 7 15 15 C 1.39030 * 119.99968 * 89.99655 * 5 4 2 16 16 C 1.39021 * 119.63812 * 184.99876 * 15 5 4 17 17 C 1.39615 * 118.91993 * 179.75109 * 16 15 5 18 18 C 1.43203 * 120.89379 * 180.28002 * 17 16 15 19 19 N 7.79430 * 163.65502 * 59.13525 * 2 1 3 20 20 C 1.40136 * 118.22314 * 0.25466 * 17 16 15 21 21 C 1.37871 * 119.16099 * 0.02562 * 20 17 16 22 22 N 1.31960 * 121.00672 * 0.02562 * 21 20 17 23 23 H 1.09000 * 109.47443 * 300.00230 * 1 2 3 24 24 H 1.08999 * 109.47250 * 60.00099 * 1 2 3 25 25 H 1.08993 * 109.47295 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47443 * 239.99770 * 2 1 3 27 27 H 1.09004 * 109.46589 * 59.99806 * 3 2 1 28 28 H 1.08995 * 109.47383 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.46755 * 300.00203 * 3 2 1 30 30 H 1.09007 * 109.46925 * 54.99935 * 4 2 1 31 31 H 1.09003 * 109.47535 * 295.00405 * 4 2 1 32 32 H 1.08996 * 109.47435 * 29.99517 * 6 5 4 33 33 H 1.08999 * 109.47138 * 150.00239 * 6 5 4 34 34 H 0.97001 * 120.00674 * 179.97438 * 10 9 7 35 35 H 1.08002 * 120.54385 * 0.03440 * 16 15 5 36 36 H 1.07996 * 120.41989 * 179.97438 * 20 17 16 37 37 H 1.08004 * 119.49227 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1257 -1.9920 0.5613 7 6 4.3420 -3.0660 1.5961 8 1 4.0429 -2.8973 2.6201 9 6 4.9217 -4.2639 1.2356 10 7 5.2865 -4.4691 -0.0111 11 14 5.1892 -5.5954 2.5182 12 1 3.9944 -6.4755 2.5745 13 1 6.3813 -6.4021 2.1531 14 1 5.4044 -4.9673 3.8465 15 6 4.2918 0.1800 1.7322 16 6 5.6726 0.1247 1.5811 17 6 6.4529 1.1460 2.1264 18 6 7.8784 1.1345 1.9906 19 7 9.0092 1.1253 1.8828 20 6 5.8038 2.1831 2.8097 21 6 4.4296 2.1586 2.9192 22 7 3.7231 1.1766 2.3921 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6053 -1.7198 1.2952 31 1 1.7516 -0.1583 2.1371 32 1 3.4756 -2.3722 -0.2266 33 1 5.0851 -1.7022 0.1326 34 1 5.6947 -5.3117 -0.2647 35 1 6.1340 -0.6925 1.0465 36 1 6.3728 2.9908 3.2458 37 1 3.9239 2.9549 3.4451 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044420297.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:26 Heat of formation + Delta-G solvation = 49.978742 kcal Electronic energy + Delta-G solvation = -19098.936824 eV Core-core repulsion = 16261.772145 eV Total energy + Delta-G solvation = -2837.164679 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.28610 -38.56018 -37.57759 -35.76353 -34.42719 -33.48195 -31.11476 -29.34746 -27.86611 -26.83015 -25.13208 -25.01839 -22.66721 -20.96402 -19.64894 -18.56241 -17.61230 -17.19795 -16.68986 -16.34128 -15.96830 -15.45048 -15.18420 -15.04730 -14.99158 -14.38093 -14.08804 -14.00777 -13.94892 -13.66437 -13.21571 -13.00559 -12.83713 -12.75058 -12.56214 -12.43615 -12.25729 -12.04013 -11.74675 -11.56322 -11.44571 -10.75546 -10.64695 -10.52443 -10.28186 -8.46674 -8.03251 -6.36869 -0.18195 0.55693 1.37055 1.39056 1.47716 1.48826 2.03375 2.25438 2.42327 2.77679 3.07275 3.13290 3.77760 4.05587 4.15511 4.19112 4.25530 4.30625 4.47525 4.71149 4.81058 4.84095 4.91621 4.95577 5.04807 5.05913 5.13504 5.18420 5.21857 5.32713 5.34452 5.53902 5.57164 5.66202 5.75512 6.04630 6.21183 6.30836 6.74209 6.79490 7.27550 7.40759 8.82540 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.011726 B = 0.008885 C = 0.005641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.316157 B = 3150.585178 C = 4962.872519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.110 4.110 3 C -0.121 4.121 4 C 0.136 3.864 5 N -0.593 5.593 6 C 0.269 3.731 7 C -0.541 4.541 8 H 0.053 0.947 9 C 0.017 3.983 10 N -0.923 5.923 11 Si 0.955 3.045 12 H -0.270 1.270 13 H -0.283 1.283 14 H -0.271 1.271 15 C 0.410 3.590 16 C -0.211 4.211 17 C 0.048 3.952 18 C 0.281 3.719 19 N -0.449 5.449 20 C -0.193 4.193 21 C 0.157 3.843 22 N -0.535 5.535 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.051 0.949 26 H 0.045 0.955 27 H 0.068 0.932 28 H 0.028 0.972 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.018 0.982 33 H 0.017 0.983 34 H 0.266 0.734 35 H 0.116 0.884 36 H 0.169 0.831 37 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.510 13.387 3.922 15.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 C -0.179 4.179 4 C 0.013 3.987 5 N -0.301 5.301 6 C 0.147 3.853 7 C -0.580 4.580 8 H 0.071 0.929 9 C -0.183 4.183 10 N -0.563 5.563 11 Si 0.780 3.220 12 H -0.196 1.196 13 H -0.209 1.209 14 H -0.196 1.196 15 C 0.175 3.825 16 C -0.240 4.240 17 C 0.037 3.963 18 C -0.034 4.034 19 N -0.125 5.125 20 C -0.218 4.218 21 C -0.002 4.002 22 N -0.253 5.253 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.036 0.964 33 H 0.035 0.965 34 H 0.075 0.925 35 H 0.134 0.866 36 H 0.186 0.814 37 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -6.718 13.035 3.614 15.103 hybrid contribution 1.099 -1.476 0.070 1.842 sum -5.619 11.559 3.684 13.370 Atomic orbital electron populations 1.21685 0.92957 1.01885 1.02643 1.21493 0.97061 0.97002 0.97429 1.21632 0.99525 0.95060 1.01650 1.21446 0.78659 0.99865 0.98719 1.46923 1.05395 1.18794 1.58959 1.18875 0.92661 0.81617 0.92119 1.21762 1.40318 1.00016 0.95891 0.92887 1.25685 0.95023 1.00434 0.97147 1.70016 1.42130 1.25998 1.18138 0.85599 0.77903 0.79117 0.79373 1.19554 1.20909 1.19619 1.18168 0.87127 0.87906 0.89307 1.21446 0.93834 1.01201 1.07481 1.16013 0.83563 0.96759 1.00012 1.25780 0.92697 0.92316 0.92611 1.81194 1.12928 1.09115 1.09309 1.22035 0.96401 0.99560 1.03776 1.23057 0.90254 0.94337 0.92526 1.67250 1.41052 1.03621 1.13380 0.91431 0.91684 0.92940 0.93682 0.91317 0.95287 0.92872 0.92481 0.89525 0.96437 0.96480 0.92458 0.86585 0.81353 0.77883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 9.19 71.98 0.66 -2.30 16 2 C -0.11 -3.15 3.13 -10.79 -0.03 -3.19 16 3 C -0.12 -3.20 7.97 71.98 0.57 -2.63 16 4 C 0.14 4.60 5.01 86.38 0.43 5.03 16 5 N -0.59 -23.71 2.44 -708.33 -1.73 -25.43 16 6 C 0.27 13.11 5.00 85.63 0.43 13.54 16 7 C -0.54 -28.84 9.39 25.60 0.24 -28.60 16 8 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 9 C 0.02 0.92 5.46 84.65 0.46 1.38 16 10 N -0.92 -52.67 13.29 21.45 0.28 -52.38 16 11 Si 0.95 43.17 29.54 68.60 2.03 45.20 16 12 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 13 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 14 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 15 C 0.41 14.92 5.77 133.04 0.77 15.69 16 16 C -0.21 -7.84 9.02 22.79 0.21 -7.63 16 17 C 0.05 1.43 5.75 -21.24 -0.12 1.31 16 18 C 0.28 9.08 15.40 88.33 1.36 10.44 16 19 N -0.45 -15.95 18.54 19.00 0.35 -15.59 16 20 C -0.19 -4.19 9.85 22.64 0.22 -3.97 16 21 C 0.16 3.35 11.16 84.59 0.94 4.29 16 22 N -0.53 -15.74 7.54 -193.48 -1.46 -17.20 16 23 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.07 1.67 7.97 -2.39 -0.02 1.65 16 28 H 0.03 0.88 6.14 -2.39 -0.01 0.87 16 29 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 2.06 8.07 -2.38 -0.02 2.04 16 31 H 0.09 2.73 7.29 -2.39 -0.02 2.71 16 32 H 0.02 0.92 8.07 -2.39 -0.02 0.90 16 33 H 0.02 0.90 5.97 -2.39 -0.01 0.89 16 34 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 35 H 0.12 5.04 6.02 -2.91 -0.02 5.02 16 36 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 37 H 0.20 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -61.46 317.26 6.68 -54.77 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: 1.06 Total: 7.29 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: 6.14 Total: 3.35 kcal Atomic # 7 Polarization: -108.06 SS G_CDS: -2.55 Total: -110.61 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -61.46 6.68 -54.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044420297.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.752 kcal (2) G-P(sol) polarization free energy of solvation -61.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds