Wall clock time and date at job start Mon Mar 30 2020 07:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47399 * 2 1 4 4 C 1.52997 * 109.47356 * 120.00288 * 2 1 3 5 5 C 1.47203 * 109.47588 * 177.79472 * 4 2 1 6 6 N 3.43553 * 155.10531 * 123.75740 * 2 1 3 7 7 N 1.46901 * 109.46809 * 239.99782 * 2 1 3 8 8 C 1.46895 * 111.00253 * 310.40786 * 7 2 1 9 9 C 1.50695 * 109.47483 * 278.37070 * 8 7 2 10 10 H 1.08007 * 119.99613 * 355.01621 * 9 8 7 11 11 C 1.37879 * 120.00252 * 175.01817 * 9 8 7 12 12 N 1.31517 * 119.99749 * 179.97438 * 11 9 8 13 13 Si 1.86795 * 120.00029 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.47035 * 90.00202 * 13 11 9 15 15 H 1.48497 * 109.47113 * 209.99962 * 13 11 9 16 16 H 1.48501 * 109.47316 * 330.00425 * 13 11 9 17 17 C 1.46905 * 110.99811 * 74.36730 * 7 2 1 18 18 C 1.50697 * 109.47625 * 75.70821 * 17 7 2 19 19 C 1.38673 * 120.41561 * 263.51963 * 18 17 7 20 20 C 1.38633 * 118.41796 * 179.78077 * 19 18 17 21 21 C 1.38226 * 119.15801 * 0.51548 * 20 19 18 22 22 N 1.31855 * 120.76834 * 359.71806 * 21 20 19 23 23 C 1.31892 * 121.72230 * 0.02562 * 22 21 20 24 24 H 1.08991 * 109.47126 * 188.11670 * 1 2 3 25 25 H 1.09000 * 109.46802 * 308.11371 * 1 2 3 26 26 H 1.08993 * 109.47240 * 68.10852 * 1 2 3 27 27 H 1.09009 * 109.47181 * 297.79367 * 4 2 1 28 28 H 1.09001 * 109.47221 * 57.78762 * 4 2 1 29 29 H 1.09006 * 109.47064 * 38.37019 * 8 7 2 30 30 H 1.08996 * 109.47186 * 158.36622 * 8 7 2 31 31 H 0.96998 * 119.99827 * 179.97438 * 12 11 9 32 32 H 1.09001 * 109.46685 * 315.70127 * 17 7 2 33 33 H 1.09005 * 109.46522 * 195.71455 * 17 7 2 34 34 H 1.07995 * 120.79305 * 0.02562 * 19 18 17 35 35 H 1.07994 * 120.41974 * 180.21982 * 20 19 18 36 36 H 1.08006 * 119.61581 * 179.74946 * 21 20 19 37 37 H 1.07993 * 119.61296 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5111 -0.7677 1.2228 6 7 4.6463 -0.8036 1.2024 7 7 2.0196 -0.6926 -1.1994 8 6 1.3569 -1.9932 -1.3637 9 6 2.0297 -3.0146 -0.4834 10 1 2.9149 -2.7472 0.0747 11 6 1.5153 -4.2905 -0.3904 12 7 2.1029 -5.1819 0.3775 13 14 -0.0160 -4.7527 -1.3551 14 1 0.3778 -5.2762 -2.6878 15 1 -0.7700 -5.7971 -0.6162 16 1 -0.8731 -3.5525 -1.5282 17 6 1.8466 0.1415 -2.3963 18 6 2.8964 1.2225 -2.4115 19 6 2.6059 2.4900 -1.9298 20 6 3.6040 3.4517 -1.9592 21 6 4.8433 3.1206 -2.4740 22 7 5.0825 1.9060 -2.9281 23 6 4.1587 0.9649 -2.9111 24 1 -0.3633 -1.0173 0.1451 25 1 -0.3633 0.6343 0.8086 26 1 -0.3633 0.3831 -0.9535 27 1 1.7094 -0.1851 2.1388 28 1 1.6447 -1.7369 1.2692 29 1 0.3078 -1.9048 -1.0812 30 1 1.4275 -2.3080 -2.4049 31 1 1.7408 -6.0794 0.4433 32 1 0.8563 0.5967 -2.3818 33 1 1.9490 -0.4771 -3.2880 34 1 1.6268 2.7213 -1.5373 35 1 3.4141 4.4483 -1.5890 36 1 5.6250 3.8653 -2.5043 37 1 4.3915 -0.0184 -3.2921 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048246597.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:56 Heat of formation + Delta-G solvation = 73.511331 kcal Electronic energy + Delta-G solvation = -19464.718078 eV Core-core repulsion = 16628.573849 eV Total energy + Delta-G solvation = -2836.144229 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.08449 -38.26269 -35.40374 -33.15280 -32.56091 -31.87255 -30.58665 -28.14415 -27.42515 -25.02247 -23.42456 -22.36488 -21.65786 -19.20518 -17.08182 -16.90889 -16.69943 -16.18754 -15.71808 -15.08792 -14.53258 -14.23045 -13.71469 -13.47024 -13.07714 -13.02700 -12.95148 -12.81927 -12.46057 -12.06892 -11.81867 -11.53347 -11.48838 -11.25208 -11.12500 -10.81334 -10.60352 -10.43379 -10.10354 -9.89423 -9.64222 -9.32805 -9.23103 -8.78993 -8.61076 -7.49538 -6.10671 -4.08173 1.29128 1.43399 3.21817 3.28407 3.31457 3.73502 3.79629 3.95576 4.34681 4.58783 4.65812 4.88583 4.94832 5.00993 5.15423 5.17541 5.19789 5.38735 5.47738 5.57758 5.70158 5.76882 5.93475 5.97343 6.00463 6.08896 6.16178 6.23084 6.39412 6.44861 6.68447 6.79558 6.88477 6.88893 7.54802 7.74481 7.83729 8.16753 8.56174 8.60446 9.01997 9.49334 11.01192 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.022926 B = 0.006588 C = 0.006294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.038957 B = 4248.855195 C = 4447.673161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.096 3.904 3 H 0.071 0.929 4 C -0.031 4.031 5 C 0.243 3.757 6 N -0.466 5.466 7 N -0.518 5.518 8 C 0.148 3.852 9 C -0.512 4.512 10 H 0.089 0.911 11 C 0.071 3.929 12 N -0.894 5.894 13 Si 0.869 3.131 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.266 1.266 17 C 0.091 3.909 18 C -0.114 4.114 19 C -0.076 4.076 20 C -0.178 4.178 21 C 0.087 3.913 22 N -0.487 5.487 23 C 0.123 3.877 24 H 0.077 0.923 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.089 0.911 28 H 0.144 0.856 29 H 0.013 0.987 30 H 0.020 0.980 31 H 0.264 0.736 32 H 0.042 0.958 33 H 0.083 0.917 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.149 0.851 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.702 15.168 -3.174 16.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.014 4.014 3 H 0.089 0.911 4 C -0.071 4.071 5 C -0.074 4.074 6 N -0.144 5.144 7 N -0.241 5.241 8 C 0.023 3.977 9 C -0.551 4.551 10 H 0.107 0.893 11 C -0.131 4.131 12 N -0.533 5.533 13 Si 0.697 3.303 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.191 1.191 17 C -0.038 4.038 18 C -0.116 4.116 19 C -0.102 4.102 20 C -0.198 4.198 21 C -0.070 4.070 22 N -0.195 5.195 23 C -0.035 4.035 24 H 0.096 0.904 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.108 0.892 28 H 0.161 0.839 29 H 0.031 0.969 30 H 0.038 0.962 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.101 0.899 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.166 0.834 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -2.676 14.614 -3.412 15.244 hybrid contribution -2.937 -0.116 -0.276 2.952 sum -5.613 14.498 -3.688 15.978 Atomic orbital electron populations 1.22444 0.97194 1.03440 1.01354 1.21463 0.92570 0.96822 0.90589 0.91126 1.19697 0.82948 1.06894 0.97513 1.28660 0.94867 0.91971 0.91864 1.81039 1.13469 1.10090 1.09762 1.62176 1.58449 1.03510 0.99987 1.20491 0.93743 0.85994 0.97477 1.21182 1.13293 0.93873 1.26710 0.89336 1.24911 0.96811 0.96332 0.95092 1.69899 1.40221 1.04522 1.38613 0.86969 0.84080 0.78633 0.80655 1.20349 1.21307 1.19114 1.21047 0.94098 0.93214 0.95444 1.20934 0.97163 0.94998 0.98537 1.21481 0.99385 0.92733 0.96632 1.22039 0.94948 1.00459 1.02312 1.22674 0.95706 0.93753 0.94877 1.67702 1.34627 1.01443 1.15744 1.22684 0.88305 0.97867 0.94611 0.90448 0.92447 0.92811 0.89249 0.83853 0.96930 0.96156 0.92585 0.93952 0.89867 0.85320 0.85314 0.83391 0.82760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.41 8.25 37.16 0.31 -2.10 16 2 C 0.10 1.46 2.24 -67.71 -0.15 1.30 16 3 H 0.07 0.99 6.25 -51.93 -0.32 0.67 16 4 C -0.03 -0.51 4.69 -29.52 -0.14 -0.64 16 5 C 0.24 4.98 13.16 -20.76 -0.27 4.70 16 6 N -0.47 -10.77 18.54 42.15 0.78 -9.99 16 7 N -0.52 -9.23 3.81 -229.52 -0.87 -10.10 16 8 C 0.15 3.07 3.63 -4.98 -0.02 3.06 16 9 C -0.51 -12.94 7.34 -34.44 -0.25 -13.20 16 10 H 0.09 2.49 5.57 -52.48 -0.29 2.20 16 11 C 0.07 1.88 5.47 -17.82 -0.10 1.79 16 12 N -0.89 -25.88 13.96 55.43 0.77 -25.11 16 13 Si 0.87 19.71 27.57 -169.99 -4.69 15.03 16 14 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.27 -5.62 6.40 56.52 0.36 -5.26 16 17 C 0.09 1.34 5.05 -4.97 -0.03 1.32 16 18 C -0.11 -1.65 5.03 -104.49 -0.53 -2.18 16 19 C -0.08 -0.93 8.56 -39.28 -0.34 -1.27 16 20 C -0.18 -2.06 10.11 -39.44 -0.40 -2.46 16 21 C 0.09 1.15 11.18 -17.55 -0.20 0.95 16 22 N -0.49 -7.86 10.36 -13.25 -0.14 -8.00 16 23 C 0.12 1.97 10.88 -17.55 -0.19 1.78 16 24 H 0.08 1.15 6.37 -51.93 -0.33 0.82 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.65 6.50 -51.93 -0.34 0.31 16 27 H 0.09 1.12 8.14 -51.92 -0.42 0.70 16 28 H 0.14 2.77 5.63 -51.93 -0.29 2.48 16 29 H 0.01 0.26 3.93 -51.93 -0.20 0.06 16 30 H 0.02 0.43 7.16 -51.93 -0.37 0.06 16 31 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.04 0.55 6.28 -51.93 -0.33 0.22 16 33 H 0.08 1.23 7.53 -51.93 -0.39 0.84 16 34 H 0.13 1.29 7.98 -52.49 -0.42 0.87 16 35 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.15 1.52 8.06 -52.48 -0.42 1.10 16 37 H 0.16 2.48 8.06 -52.49 -0.42 2.06 16 LS Contribution 302.44 15.07 4.56 4.56 Total: -1.00 -31.40 302.44 -6.46 -37.87 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -4.58 Total: 2.70 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -2.30 Total: -6.95 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: 0.54 Total: -53.20 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -4.69 Total: 15.03 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.40 -6.46 -37.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048246597.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.379 kcal (2) G-P(sol) polarization free energy of solvation -31.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds