Wall clock time and date at job start Mon Mar 30 2020 07:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47399 * 2 1 4 4 C 1.52997 * 109.47356 * 120.00288 * 2 1 3 5 5 C 1.47203 * 109.47588 * 177.79472 * 4 2 1 6 6 N 3.43553 * 155.10531 * 123.75740 * 2 1 3 7 7 N 1.46901 * 109.46809 * 239.99782 * 2 1 3 8 8 C 1.46895 * 111.00253 * 310.40786 * 7 2 1 9 9 C 1.50695 * 109.47483 * 278.37070 * 8 7 2 10 10 H 1.08007 * 119.99613 * 355.01621 * 9 8 7 11 11 C 1.37879 * 120.00252 * 175.01817 * 9 8 7 12 12 N 1.31517 * 119.99749 * 179.97438 * 11 9 8 13 13 Si 1.86795 * 120.00029 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.47035 * 90.00202 * 13 11 9 15 15 H 1.48497 * 109.47113 * 209.99962 * 13 11 9 16 16 H 1.48501 * 109.47316 * 330.00425 * 13 11 9 17 17 C 1.46905 * 110.99811 * 74.36730 * 7 2 1 18 18 C 1.50697 * 109.47625 * 75.70821 * 17 7 2 19 19 C 1.38673 * 120.41561 * 263.51963 * 18 17 7 20 20 C 1.38633 * 118.41796 * 179.78077 * 19 18 17 21 21 C 1.38226 * 119.15801 * 0.51548 * 20 19 18 22 22 N 1.31855 * 120.76834 * 359.71806 * 21 20 19 23 23 C 1.31892 * 121.72230 * 0.02562 * 22 21 20 24 24 H 1.08991 * 109.47126 * 188.11670 * 1 2 3 25 25 H 1.09000 * 109.46802 * 308.11371 * 1 2 3 26 26 H 1.08993 * 109.47240 * 68.10852 * 1 2 3 27 27 H 1.09009 * 109.47181 * 297.79367 * 4 2 1 28 28 H 1.09001 * 109.47221 * 57.78762 * 4 2 1 29 29 H 1.09006 * 109.47064 * 38.37019 * 8 7 2 30 30 H 1.08996 * 109.47186 * 158.36622 * 8 7 2 31 31 H 0.96998 * 119.99827 * 179.97438 * 12 11 9 32 32 H 1.09001 * 109.46685 * 315.70127 * 17 7 2 33 33 H 1.09005 * 109.46522 * 195.71455 * 17 7 2 34 34 H 1.07995 * 120.79305 * 0.02562 * 19 18 17 35 35 H 1.07994 * 120.41974 * 180.21982 * 20 19 18 36 36 H 1.08006 * 119.61581 * 179.74946 * 21 20 19 37 37 H 1.07993 * 119.61296 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5111 -0.7677 1.2228 6 7 4.6463 -0.8036 1.2024 7 7 2.0196 -0.6926 -1.1994 8 6 1.3569 -1.9932 -1.3637 9 6 2.0297 -3.0146 -0.4834 10 1 2.9149 -2.7472 0.0747 11 6 1.5153 -4.2905 -0.3904 12 7 2.1029 -5.1819 0.3775 13 14 -0.0160 -4.7527 -1.3551 14 1 0.3778 -5.2762 -2.6878 15 1 -0.7700 -5.7971 -0.6162 16 1 -0.8731 -3.5525 -1.5282 17 6 1.8466 0.1415 -2.3963 18 6 2.8964 1.2225 -2.4115 19 6 2.6059 2.4900 -1.9298 20 6 3.6040 3.4517 -1.9592 21 6 4.8433 3.1206 -2.4740 22 7 5.0825 1.9060 -2.9281 23 6 4.1587 0.9649 -2.9111 24 1 -0.3633 -1.0173 0.1451 25 1 -0.3633 0.6343 0.8086 26 1 -0.3633 0.3831 -0.9535 27 1 1.7094 -0.1851 2.1388 28 1 1.6447 -1.7369 1.2692 29 1 0.3078 -1.9048 -1.0812 30 1 1.4275 -2.3080 -2.4049 31 1 1.7408 -6.0794 0.4433 32 1 0.8563 0.5967 -2.3818 33 1 1.9490 -0.4771 -3.2880 34 1 1.6268 2.7213 -1.5373 35 1 3.4141 4.4483 -1.5890 36 1 5.6250 3.8653 -2.5043 37 1 4.3915 -0.0184 -3.2921 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048246597.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:56 Heat of formation + Delta-G solvation = 52.249974 kcal Electronic energy + Delta-G solvation = -19465.640040 eV Core-core repulsion = 16628.573849 eV Total energy + Delta-G solvation = -2837.066191 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.15525 -39.56047 -37.04257 -34.74361 -34.05824 -32.94132 -31.92376 -29.72399 -28.64818 -26.27942 -24.50679 -23.90929 -22.82334 -20.54053 -18.90362 -18.29209 -17.84284 -17.37724 -16.93393 -16.43631 -15.86710 -15.76032 -14.91779 -14.86544 -14.42084 -14.34499 -14.24002 -14.17838 -13.88119 -13.43417 -13.19321 -12.97801 -12.80526 -12.64914 -12.44028 -12.38742 -12.07061 -11.86726 -11.70826 -11.39698 -11.10097 -10.67293 -10.60420 -10.33428 -9.85453 -8.81915 -8.13831 -6.14013 0.25580 0.43626 1.42954 1.44659 1.53255 2.14342 2.18268 2.44853 2.86982 3.19552 3.36089 3.53674 3.62378 3.92464 4.01785 4.16706 4.17416 4.22285 4.42636 4.55255 4.60460 4.67614 4.82411 4.87293 4.94076 4.96668 5.02221 5.16416 5.18078 5.25571 5.39469 5.43100 5.60317 5.72640 5.87895 6.12853 6.51103 6.75583 6.94102 7.02594 7.11620 7.47552 9.01789 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.022926 B = 0.006588 C = 0.006294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.038957 B = 4248.855195 C = 4447.673161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.097 3.903 3 H 0.091 0.909 4 C -0.032 4.032 5 C 0.259 3.741 6 N -0.525 5.525 7 N -0.544 5.544 8 C 0.158 3.842 9 C -0.499 4.499 10 H 0.049 0.951 11 C 0.009 3.991 12 N -0.953 5.953 13 Si 0.935 3.065 14 H -0.283 1.283 15 H -0.293 1.293 16 H -0.232 1.232 17 C 0.095 3.905 18 C -0.121 4.121 19 C -0.072 4.072 20 C -0.166 4.166 21 C 0.073 3.927 22 N -0.522 5.522 23 C 0.092 3.908 24 H 0.056 0.944 25 H 0.090 0.910 26 H 0.068 0.932 27 H 0.139 0.861 28 H 0.115 0.885 29 H 0.032 0.968 30 H 0.015 0.985 31 H 0.261 0.739 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.163 0.837 35 H 0.169 0.831 36 H 0.173 0.827 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.734 18.511 -3.394 20.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.013 4.013 3 H 0.109 0.891 4 C -0.072 4.072 5 C -0.057 4.057 6 N -0.204 5.204 7 N -0.268 5.268 8 C 0.032 3.968 9 C -0.538 4.538 10 H 0.067 0.933 11 C -0.188 4.188 12 N -0.594 5.594 13 Si 0.760 3.240 14 H -0.209 1.209 15 H -0.219 1.219 16 H -0.155 1.155 17 C -0.033 4.033 18 C -0.124 4.124 19 C -0.098 4.098 20 C -0.185 4.185 21 C -0.084 4.084 22 N -0.231 5.231 23 C -0.064 4.064 24 H 0.075 0.925 25 H 0.109 0.891 26 H 0.087 0.913 27 H 0.156 0.844 28 H 0.133 0.867 29 H 0.050 0.950 30 H 0.033 0.967 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.181 0.819 35 H 0.187 0.813 36 H 0.190 0.810 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.722 17.993 -3.648 19.230 hybrid contribution -1.875 -1.032 -0.168 2.147 sum -7.597 16.961 -3.817 18.973 Atomic orbital electron populations 1.22370 0.94641 1.03039 1.03609 1.21583 0.94456 0.96916 0.88356 0.89130 1.19981 0.80092 1.06248 1.00854 1.29532 0.95785 0.90268 0.90079 1.81033 1.15471 1.12004 1.11933 1.61964 1.59258 1.03350 1.02251 1.20242 0.94251 0.86599 0.95744 1.21460 1.11648 0.94931 1.25763 0.93314 1.25749 1.00328 0.96407 0.96293 1.70083 1.42753 1.05023 1.41581 0.85899 0.80503 0.79216 0.78336 1.20899 1.21906 1.15481 1.21026 0.95663 0.92894 0.93686 1.20901 0.96189 0.96146 0.99164 1.21874 1.01012 0.91527 0.95410 1.22469 0.93677 1.02011 1.00358 1.23235 0.97555 0.93138 0.94469 1.67628 1.35424 1.02808 1.17237 1.22564 0.89705 0.97562 0.96604 0.92530 0.89072 0.91270 0.84386 0.86691 0.95032 0.96653 0.93001 0.90931 0.90790 0.81910 0.81327 0.80975 0.84879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.71 8.25 71.98 0.59 -3.12 16 2 C 0.10 2.61 2.24 44.91 0.10 2.71 16 3 H 0.09 2.12 6.25 -2.39 -0.01 2.11 16 4 C -0.03 -1.00 4.69 28.79 0.14 -0.86 16 5 C 0.26 10.66 13.16 89.44 1.18 11.83 16 6 N -0.53 -25.05 18.54 20.01 0.37 -24.68 16 7 N -0.54 -18.50 3.81 -880.08 -3.35 -21.86 16 8 C 0.16 6.34 3.63 85.56 0.31 6.65 16 9 C -0.50 -25.70 7.34 25.60 0.19 -25.51 16 10 H 0.05 2.86 5.57 -2.91 -0.02 2.85 16 11 C 0.01 0.48 5.47 84.65 0.46 0.94 16 12 N -0.95 -57.49 13.96 21.45 0.30 -57.19 16 13 Si 0.94 40.61 27.57 68.60 1.89 42.50 16 14 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 15 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 16 H -0.23 -8.68 6.40 99.48 0.64 -8.04 16 17 C 0.10 2.59 5.05 85.56 0.43 3.03 16 18 C -0.12 -3.30 5.03 -19.78 -0.10 -3.40 16 19 C -0.07 -1.47 8.56 22.47 0.19 -1.28 16 20 C -0.17 -3.16 10.11 22.36 0.23 -2.93 16 21 C 0.07 1.78 11.18 84.69 0.95 2.72 16 22 N -0.52 -16.89 10.36 -195.84 -2.03 -18.92 16 23 C 0.09 3.02 10.88 84.67 0.92 3.94 16 24 H 0.06 1.45 6.37 -2.39 -0.02 1.43 16 25 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.07 1.26 6.50 -2.39 -0.02 1.24 16 27 H 0.14 2.94 8.14 -2.38 -0.02 2.92 16 28 H 0.12 4.42 5.63 -2.39 -0.01 4.40 16 29 H 0.03 1.18 3.93 -2.38 -0.01 1.17 16 30 H 0.02 0.64 7.16 -2.39 -0.02 0.62 16 31 H 0.26 14.95 8.31 -92.71 -0.77 14.17 16 32 H 0.07 1.54 6.28 -2.39 -0.01 1.52 16 33 H 0.07 2.12 7.53 -2.38 -0.02 2.10 16 34 H 0.16 2.20 7.98 -2.91 -0.02 2.18 16 35 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 36 H 0.17 3.12 8.06 -2.91 -0.02 3.10 16 37 H 0.13 4.66 8.06 -2.91 -0.02 4.64 16 Total: -1.00 -73.57 302.44 3.78 -69.79 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 1.01 Total: 15.64 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: 5.59 Total: -5.28 kcal Atomic # 7 Polarization: -117.93 SS G_CDS: -4.71 Total: -122.65 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 1.89 Total: 42.50 kcal Total: -73.57 3.78 -69.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048246597.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.038 kcal (2) G-P(sol) polarization free energy of solvation -73.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds