Wall clock time and date at job start Mon Mar 30 2020 06:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00058 * 2 1 4 4 H 1.48506 * 109.47122 * 270.00661 * 3 2 1 5 5 H 1.48500 * 109.47151 * 30.00468 * 3 2 1 6 6 H 1.48502 * 109.47161 * 150.00426 * 3 2 1 7 7 C 1.37878 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00276 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99547 * 179.97438 * 7 2 1 10 10 N 1.46905 * 109.46668 * 174.08201 * 9 7 2 11 11 C 1.46906 * 110.99724 * 159.74538 * 10 9 7 12 12 C 1.52998 * 109.46842 * 189.99798 * 11 10 9 13 13 C 1.53003 * 109.46748 * 180.02562 * 12 11 10 14 14 C 1.53005 * 109.46862 * 180.02562 * 13 12 11 15 15 C 1.53003 * 109.46862 * 179.97438 * 14 13 12 16 16 C 1.53006 * 109.46974 * 179.97438 * 15 14 13 17 17 Cl 1.80298 * 109.46829 * 179.97438 * 16 15 14 18 18 C 1.46895 * 110.99917 * 283.69501 * 10 9 7 19 19 C 1.53001 * 117.49620 * 138.91732 * 18 10 9 20 20 C 1.53006 * 117.49879 * 70.26072 * 18 10 9 21 21 H 0.97001 * 119.99919 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.47465 * 54.08261 * 9 7 2 23 23 H 1.09003 * 109.47380 * 294.07862 * 9 7 2 24 24 H 1.09002 * 109.46899 * 69.99838 * 11 10 9 25 25 H 1.08996 * 109.47263 * 310.00065 * 11 10 9 26 26 H 1.09003 * 109.47304 * 299.99766 * 12 11 10 27 27 H 1.09002 * 109.47342 * 60.00311 * 12 11 10 28 28 H 1.09005 * 109.47203 * 299.99472 * 13 12 11 29 29 H 1.08992 * 109.47687 * 59.99881 * 13 12 11 30 30 H 1.09003 * 109.46869 * 299.99267 * 14 13 12 31 31 H 1.08993 * 109.47846 * 59.99620 * 14 13 12 32 32 H 1.09003 * 109.46780 * 299.99322 * 15 14 13 33 33 H 1.09001 * 109.47680 * 59.99648 * 15 14 13 34 34 H 1.08996 * 109.47228 * 299.99901 * 16 15 14 35 35 H 1.09001 * 109.46895 * 59.99547 * 16 15 14 36 36 H 1.09000 * 115.55517 * 284.58787 * 18 10 9 37 37 H 1.08999 * 117.50031 * 0.02562 * 19 18 10 38 38 H 1.09003 * 117.50001 * 145.01890 * 19 18 10 39 39 H 1.08993 * 117.49791 * 214.97902 * 20 18 10 40 40 H 1.09005 * 117.49336 * 359.97304 * 20 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 4.0012 -2.5717 0.1412 11 6 5.3896 -2.6877 -0.3247 12 6 5.7816 -4.1648 -0.3968 13 6 7.2278 -4.2855 -0.8814 14 6 7.6197 -5.7628 -0.9541 15 6 9.0657 -5.8835 -1.4393 16 6 9.4578 -7.3607 -1.5115 17 17 11.1615 -7.5029 -2.0840 18 6 3.8710 -3.0360 1.5288 19 6 3.3915 -4.4717 1.7513 20 6 2.4590 -3.2970 2.0569 21 1 -0.4850 0.8401 0.0004 22 1 3.8752 -0.5914 0.8311 23 1 3.8745 -0.7745 -0.9394 24 1 6.0505 -2.1698 0.3704 25 1 5.4795 -2.2391 -1.3140 26 1 5.6917 -4.6133 0.5926 27 1 5.1207 -4.6827 -1.0919 28 1 7.3182 -3.8370 -1.8708 29 1 7.8885 -3.7678 -0.1861 30 1 7.5293 -6.2117 0.0350 31 1 6.9590 -6.2802 -1.6497 32 1 9.1556 -5.4347 -2.4286 33 1 9.7267 -5.3660 -0.7441 34 1 9.3679 -7.8092 -0.5221 35 1 8.7968 -7.8785 -2.2065 36 1 4.6044 -2.6361 2.2291 37 1 3.1730 -5.0720 0.8680 38 1 3.8090 -5.0163 2.5981 39 1 2.2634 -3.0691 3.1047 40 1 1.6266 -3.1237 1.3748 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051019460.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:50 Heat of formation + Delta-G solvation = -6.912408 kcal Electronic energy + Delta-G solvation = -17157.157821 eV Core-core repulsion = 14418.633651 eV Total energy + Delta-G solvation = -2738.524171 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.140 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.06079 -36.80262 -35.77281 -33.84590 -32.81596 -31.56635 -28.52438 -26.37153 -23.39607 -22.02098 -21.61745 -21.33290 -20.71374 -19.41458 -16.79872 -16.26190 -15.25468 -15.11519 -14.69557 -14.50754 -14.22053 -13.94768 -13.54721 -13.02654 -12.86802 -12.56258 -12.09395 -11.93146 -11.78940 -11.53320 -11.27485 -11.00559 -10.92272 -10.76382 -10.73797 -10.64463 -10.58931 -10.44151 -10.16562 -9.89243 -9.57930 -9.19218 -9.09688 -8.52317 -7.37586 -6.02211 -3.97883 1.96920 3.28738 3.36420 3.38117 4.32627 4.43625 4.47237 4.54443 4.66583 4.84881 4.94274 5.07692 5.19020 5.29050 5.34775 5.53078 5.60788 5.65221 5.67149 5.74850 5.85216 5.89150 5.96920 6.04276 6.15526 6.16801 6.18775 6.35345 6.52215 6.60039 6.73802 6.81706 6.98041 7.16950 7.67098 7.92097 8.12133 8.70024 9.07421 9.59867 11.10458 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.034548 B = 0.003162 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.267431 B = 8852.022982 C = 9408.099823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.066 3.934 3 Si 0.871 3.129 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.269 1.269 7 C -0.499 4.499 8 H 0.086 0.914 9 C 0.162 3.838 10 N -0.502 5.502 11 C 0.058 3.942 12 C -0.112 4.112 13 C -0.117 4.117 14 C -0.117 4.117 15 C -0.131 4.131 16 C -0.030 4.030 17 Cl -0.196 7.196 18 C 0.021 3.979 19 C -0.183 4.183 20 C -0.152 4.152 21 H 0.262 0.738 22 H -0.008 1.008 23 H 0.020 0.980 24 H 0.019 0.981 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.067 0.933 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.197 -12.579 -0.428 21.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.699 3.301 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.194 1.194 7 C -0.537 4.537 8 H 0.104 0.896 9 C 0.036 3.964 10 N -0.226 5.226 11 C -0.071 4.071 12 C -0.150 4.150 13 C -0.156 4.156 14 C -0.155 4.155 15 C -0.168 4.168 16 C -0.093 4.093 17 Cl -0.169 7.169 18 C -0.088 4.088 19 C -0.220 4.220 20 C -0.189 4.189 21 H 0.072 0.928 22 H 0.010 0.990 23 H 0.038 0.962 24 H 0.038 0.962 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 16.870 -12.749 -0.771 21.159 hybrid contribution 1.001 1.566 0.499 1.925 sum 17.871 -11.183 -0.272 21.083 Atomic orbital electron populations 1.69886 1.06016 1.26679 1.51594 1.24896 0.94714 0.98666 0.95172 0.86929 0.80343 0.84370 0.78493 1.20290 1.21301 1.19360 1.21108 0.88658 0.94581 1.49352 0.89627 1.20202 0.97292 0.83873 0.95023 1.61742 1.17457 1.25660 1.17780 1.22072 0.89747 0.95754 0.99515 1.21570 0.94588 0.97072 1.01796 1.21556 0.97210 0.95239 1.01550 1.21567 0.94523 0.97862 1.01582 1.21946 0.97724 0.93953 1.03226 1.24454 0.82352 0.99950 1.02529 1.98720 1.28174 1.98652 1.91384 1.22048 0.98402 0.97838 0.90489 1.23017 1.05717 0.91251 1.02058 1.23168 0.95060 0.99687 1.01031 0.92772 0.98987 0.96185 0.96248 0.91506 0.91792 0.91407 0.91973 0.92267 0.91725 0.91558 0.90705 0.90814 0.88985 0.88928 0.91567 0.88955 0.90360 0.90249 0.85921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.96 55.43 0.77 -26.55 16 2 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.87 21.44 27.59 -169.99 -4.69 16.75 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.42 6.38 56.52 0.36 -6.06 16 7 C -0.50 -13.85 8.42 -34.44 -0.29 -14.14 16 8 H 0.09 2.56 6.04 -52.49 -0.32 2.24 16 9 C 0.16 3.91 3.87 -4.97 -0.02 3.89 16 10 N -0.50 -10.36 4.56 -228.07 -1.04 -11.40 16 11 C 0.06 0.96 4.94 -3.82 -0.02 0.94 16 12 C -0.11 -1.49 5.02 -26.73 -0.13 -1.62 16 13 C -0.12 -1.21 5.21 -26.73 -0.14 -1.35 16 14 C -0.12 -0.96 5.22 -26.73 -0.14 -1.10 16 15 C -0.13 -0.96 5.34 -26.73 -0.14 -1.10 16 16 C -0.03 -0.20 6.66 37.16 0.25 0.05 16 17 Cl -0.20 -1.71 29.15 -51.86 -1.51 -3.22 16 18 C 0.02 0.41 4.19 -67.71 -0.28 0.12 16 19 C -0.18 -2.97 9.22 -26.69 -0.25 -3.22 16 20 C -0.15 -2.96 9.48 -26.69 -0.25 -3.21 16 21 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 22 H -0.01 -0.19 6.63 -51.93 -0.34 -0.53 16 23 H 0.02 0.49 7.44 -51.93 -0.39 0.10 16 24 H 0.02 0.32 8.12 -51.93 -0.42 -0.10 16 25 H 0.07 1.11 7.82 -51.93 -0.41 0.71 16 26 H 0.06 0.85 6.56 -51.93 -0.34 0.51 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 38 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.12 2.82 5.52 -51.93 -0.29 2.53 16 LS Contribution 331.17 15.07 4.99 4.99 Total: -1.00 -29.43 331.17 -10.17 -39.60 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -7.18 Total: -1.24 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: -1.52 Total: -18.94 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: -0.27 Total: -37.94 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.69 Total: 16.75 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -1.51 Total: -3.22 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.43 -10.17 -39.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051019460.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.688 kcal (2) G-P(sol) polarization free energy of solvation -29.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds