Wall clock time and date at job start Mon Mar 30 2020 06:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00058 * 2 1 4 4 H 1.48506 * 109.47122 * 270.00661 * 3 2 1 5 5 H 1.48500 * 109.47151 * 30.00468 * 3 2 1 6 6 H 1.48502 * 109.47161 * 150.00426 * 3 2 1 7 7 C 1.37878 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00276 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99547 * 179.97438 * 7 2 1 10 10 N 1.46905 * 109.46668 * 174.08201 * 9 7 2 11 11 C 1.46906 * 110.99724 * 159.74538 * 10 9 7 12 12 C 1.52998 * 109.46842 * 189.99798 * 11 10 9 13 13 C 1.53003 * 109.46748 * 180.02562 * 12 11 10 14 14 C 1.53005 * 109.46862 * 180.02562 * 13 12 11 15 15 C 1.53003 * 109.46862 * 179.97438 * 14 13 12 16 16 C 1.53006 * 109.46974 * 179.97438 * 15 14 13 17 17 Cl 1.80298 * 109.46829 * 179.97438 * 16 15 14 18 18 C 1.46895 * 110.99917 * 283.69501 * 10 9 7 19 19 C 1.53001 * 117.49620 * 138.91732 * 18 10 9 20 20 C 1.53006 * 117.49879 * 70.26072 * 18 10 9 21 21 H 0.97001 * 119.99919 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.47465 * 54.08261 * 9 7 2 23 23 H 1.09003 * 109.47380 * 294.07862 * 9 7 2 24 24 H 1.09002 * 109.46899 * 69.99838 * 11 10 9 25 25 H 1.08996 * 109.47263 * 310.00065 * 11 10 9 26 26 H 1.09003 * 109.47304 * 299.99766 * 12 11 10 27 27 H 1.09002 * 109.47342 * 60.00311 * 12 11 10 28 28 H 1.09005 * 109.47203 * 299.99472 * 13 12 11 29 29 H 1.08992 * 109.47687 * 59.99881 * 13 12 11 30 30 H 1.09003 * 109.46869 * 299.99267 * 14 13 12 31 31 H 1.08993 * 109.47846 * 59.99620 * 14 13 12 32 32 H 1.09003 * 109.46780 * 299.99322 * 15 14 13 33 33 H 1.09001 * 109.47680 * 59.99648 * 15 14 13 34 34 H 1.08996 * 109.47228 * 299.99901 * 16 15 14 35 35 H 1.09001 * 109.46895 * 59.99547 * 16 15 14 36 36 H 1.09000 * 115.55517 * 284.58787 * 18 10 9 37 37 H 1.08999 * 117.50031 * 0.02562 * 19 18 10 38 38 H 1.09003 * 117.50001 * 145.01890 * 19 18 10 39 39 H 1.08993 * 117.49791 * 214.97902 * 20 18 10 40 40 H 1.09005 * 117.49336 * 359.97304 * 20 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 4.0012 -2.5717 0.1412 11 6 5.3896 -2.6877 -0.3247 12 6 5.7816 -4.1648 -0.3968 13 6 7.2278 -4.2855 -0.8814 14 6 7.6197 -5.7628 -0.9541 15 6 9.0657 -5.8835 -1.4393 16 6 9.4578 -7.3607 -1.5115 17 17 11.1615 -7.5029 -2.0840 18 6 3.8710 -3.0360 1.5288 19 6 3.3915 -4.4717 1.7513 20 6 2.4590 -3.2970 2.0569 21 1 -0.4850 0.8401 0.0004 22 1 3.8752 -0.5914 0.8311 23 1 3.8745 -0.7745 -0.9394 24 1 6.0505 -2.1698 0.3704 25 1 5.4795 -2.2391 -1.3140 26 1 5.6917 -4.6133 0.5926 27 1 5.1207 -4.6827 -1.0919 28 1 7.3182 -3.8370 -1.8708 29 1 7.8885 -3.7678 -0.1861 30 1 7.5293 -6.2117 0.0350 31 1 6.9590 -6.2802 -1.6497 32 1 9.1556 -5.4347 -2.4286 33 1 9.7267 -5.3660 -0.7441 34 1 9.3679 -7.8092 -0.5221 35 1 8.7968 -7.8785 -2.2065 36 1 4.6044 -2.6361 2.2291 37 1 3.1730 -5.0720 0.8680 38 1 3.8090 -5.0163 2.5981 39 1 2.2634 -3.0691 3.1047 40 1 1.6266 -3.1237 1.3748 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051019460.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:50 Heat of formation + Delta-G solvation = -23.224067 kcal Electronic energy + Delta-G solvation = -17157.865148 eV Core-core repulsion = 14418.633651 eV Total energy + Delta-G solvation = -2739.231497 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.140 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.52783 -37.50451 -36.54404 -35.32411 -34.59319 -32.88833 -29.99502 -27.71567 -24.41784 -23.82744 -23.04961 -22.13595 -21.76293 -20.97192 -18.87725 -17.01363 -16.82011 -16.25793 -16.24244 -15.57724 -15.34611 -15.25876 -14.69605 -14.37613 -13.99341 -13.90019 -13.83172 -13.20109 -12.79459 -12.78246 -12.60272 -12.40851 -12.20545 -12.04905 -11.82240 -11.77049 -11.71346 -11.38136 -11.29250 -11.21239 -11.12836 -10.96626 -10.71157 -10.64494 -8.99303 -8.22512 -6.22911 1.33955 1.35219 1.42583 1.44781 2.36260 3.00869 3.09630 3.22026 3.75793 3.94521 4.11785 4.16644 4.20678 4.24247 4.29908 4.42529 4.49968 4.57683 4.67365 4.74865 4.78202 4.84899 4.89388 4.91002 4.99685 5.04362 5.08360 5.16604 5.21590 5.32301 5.38396 5.50459 5.53776 5.59147 5.63226 6.06627 6.51284 6.70973 6.84005 7.38820 8.93281 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.034548 B = 0.003162 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.267431 B = 8852.022982 C = 9408.099823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.007 3.993 3 Si 0.939 3.061 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.255 1.255 7 C -0.497 4.497 8 H 0.050 0.950 9 C 0.170 3.830 10 N -0.519 5.519 11 C 0.055 3.945 12 C -0.101 4.101 13 C -0.112 4.112 14 C -0.111 4.111 15 C -0.126 4.126 16 C -0.026 4.026 17 Cl -0.215 7.215 18 C 0.009 3.991 19 C -0.141 4.141 20 C -0.177 4.177 21 H 0.264 0.736 22 H -0.013 1.013 23 H 0.022 0.978 24 H 0.026 0.974 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.116 0.884 39 H 0.091 0.909 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.576 -13.225 0.063 23.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.190 4.190 3 Si 0.763 3.237 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.179 1.179 7 C -0.536 4.536 8 H 0.068 0.932 9 C 0.044 3.956 10 N -0.243 5.243 11 C -0.073 4.073 12 C -0.139 4.139 13 C -0.150 4.150 14 C -0.149 4.149 15 C -0.163 4.163 16 C -0.088 4.088 17 Cl -0.189 7.189 18 C -0.100 4.100 19 C -0.179 4.179 20 C -0.215 4.215 21 H 0.073 0.927 22 H 0.005 0.995 23 H 0.040 0.960 24 H 0.044 0.956 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.134 0.866 39 H 0.109 0.891 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 19.273 -13.417 -0.284 23.485 hybrid contribution 0.197 1.681 0.352 1.728 sum 19.470 -11.736 0.068 22.734 Atomic orbital electron populations 1.70040 1.07886 1.27706 1.53461 1.25758 0.95507 1.02660 0.95065 0.85844 0.79331 0.79489 0.79017 1.19279 1.21049 1.17906 1.21332 0.90775 0.93294 1.48155 0.93207 1.19960 0.94748 0.86235 0.94692 1.61663 1.20178 1.23278 1.19230 1.22205 0.87535 0.98347 0.99177 1.21469 0.96251 0.94284 1.01915 1.21493 0.95140 0.96926 1.01432 1.21486 0.94954 0.96263 1.02198 1.21864 0.97110 0.94448 1.02914 1.24557 0.81111 0.99644 1.03528 1.98722 1.29910 1.98662 1.91625 1.22189 0.97840 1.00114 0.89821 1.23042 1.02159 0.89770 1.02890 1.23004 0.94328 1.03451 1.00695 0.92714 0.99493 0.96014 0.95578 0.91880 0.91406 0.92356 0.92079 0.91818 0.90933 0.91313 0.91132 0.90934 0.87673 0.87870 0.90395 0.89176 0.86552 0.89093 0.90373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.33 13.96 21.45 0.30 -59.03 16 2 C 0.01 0.39 5.47 84.65 0.46 0.85 16 3 Si 0.94 44.42 27.59 68.60 1.89 46.31 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 6 H -0.25 -11.39 6.38 99.48 0.63 -10.76 16 7 C -0.50 -28.39 8.42 25.60 0.22 -28.18 16 8 H 0.05 3.15 6.04 -2.91 -0.02 3.13 16 9 C 0.17 8.20 3.87 85.56 0.33 8.53 16 10 N -0.52 -21.09 4.56 -875.49 -4.00 -25.09 16 11 C 0.06 1.75 4.94 86.30 0.43 2.17 16 12 C -0.10 -2.45 5.02 30.59 0.15 -2.30 16 13 C -0.11 -2.01 5.21 30.60 0.16 -1.85 16 14 C -0.11 -1.49 5.22 30.60 0.16 -1.33 16 15 C -0.13 -1.52 5.34 30.60 0.16 -1.36 16 16 C -0.03 -0.28 6.66 71.98 0.48 0.20 16 17 Cl -0.22 -3.42 29.15 -2.72 -0.08 -3.50 16 18 C 0.01 0.34 4.19 44.92 0.19 0.53 16 19 C -0.14 -4.28 9.22 30.62 0.28 -4.00 16 20 C -0.18 -6.93 9.48 30.62 0.29 -6.64 16 21 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 22 H -0.01 -0.62 6.63 -2.39 -0.02 -0.63 16 23 H 0.02 1.04 7.44 -2.39 -0.02 1.02 16 24 H 0.03 0.80 8.12 -2.39 -0.02 0.78 16 25 H 0.06 2.02 7.82 -2.39 -0.02 2.00 16 26 H 0.07 1.59 6.56 -2.39 -0.02 1.58 16 27 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 29 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 34 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.10 0.90 8.14 -2.39 -0.02 0.89 16 36 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 37 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 38 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 39 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 40 H 0.08 3.80 5.52 -2.38 -0.01 3.78 16 Total: -1.00 -65.10 331.17 2.33 -62.76 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 0.91 Total: 11.92 kcal Atomic # 6 Polarization: -36.69 SS G_CDS: 3.31 Total: -33.37 kcal Atomic # 7 Polarization: -80.42 SS G_CDS: -3.70 Total: -84.12 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.89 Total: 46.31 kcal Atomic # 17 Polarization: -3.42 SS G_CDS: -0.08 Total: -3.50 kcal Total: -65.10 2.33 -62.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051019460.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.540 kcal (2) G-P(sol) polarization free energy of solvation -65.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds