Wall clock time and date at job start Mon Mar 30 2020 07:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 119.99975 * 2 1 4 4 H 1.48495 * 109.47303 * 264.70462 * 3 2 1 5 5 H 1.48502 * 109.47173 * 24.70613 * 3 2 1 6 6 H 1.48500 * 109.47264 * 144.70843 * 3 2 1 7 7 C 1.37878 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00099 * 4.94392 * 7 2 1 9 9 C 1.50697 * 120.00197 * 184.95236 * 7 2 1 10 10 H 1.09005 * 109.47215 * 25.02248 * 9 7 2 11 11 N 1.46904 * 109.47422 * 145.01708 * 9 7 2 12 12 C 1.46893 * 111.00386 * 275.00348 * 11 9 7 13 13 C 1.52997 * 109.47340 * 204.99830 * 12 11 9 14 14 C 1.52996 * 109.47386 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.47152 * 60.00109 * 14 13 12 16 16 C 1.53000 * 109.47236 * 300.00246 * 15 14 13 17 17 C 1.52999 * 109.47089 * 59.99468 * 16 15 14 18 18 C 1.50698 * 109.46921 * 265.02198 * 9 7 2 19 19 C 1.38237 * 120.00006 * 284.93959 * 18 9 7 20 20 C 1.38231 * 119.99820 * 179.81308 * 19 18 9 21 21 C 1.38233 * 120.00448 * 0.39695 * 20 19 18 22 22 C 1.38245 * 119.99591 * 359.85685 * 21 20 19 23 23 C 1.38234 * 119.99905 * 105.21658 * 18 9 7 24 24 H 0.96999 * 120.00071 * 359.97438 * 1 2 3 25 25 H 1.00902 * 110.99901 * 151.04691 * 11 9 7 26 26 H 1.09005 * 109.47047 * 324.99935 * 12 11 9 27 27 H 1.09007 * 109.47288 * 59.99593 * 13 12 11 28 28 H 1.09005 * 109.47137 * 300.00050 * 13 12 11 29 29 H 1.08999 * 109.47656 * 299.99986 * 14 13 12 30 30 H 1.09007 * 109.47087 * 179.97438 * 14 13 12 31 31 H 1.09005 * 109.46833 * 59.99893 * 15 14 13 32 32 H 1.08995 * 109.47324 * 179.97438 * 15 14 13 33 33 H 1.08997 * 109.47638 * 180.02562 * 16 15 14 34 34 H 1.09009 * 109.46656 * 300.00010 * 16 15 14 35 35 H 1.09007 * 109.46925 * 180.02562 * 17 16 15 36 36 H 1.08999 * 109.47454 * 60.00583 * 17 16 15 37 37 H 1.08007 * 119.99584 * 359.97438 * 19 18 9 38 38 H 1.08007 * 119.99815 * 180.22981 * 20 19 18 39 39 H 1.07995 * 120.00416 * 179.83362 * 21 20 19 40 40 H 1.08001 * 119.99499 * 179.97438 * 22 21 20 41 41 H 1.07999 * 120.00402 * 359.97438 * 23 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6085 1.9818 -1.3940 5 1 1.3951 2.6824 0.5852 6 1 3.4863 1.4750 0.8089 7 6 2.0045 -1.1940 -0.0005 8 1 1.4676 -2.1276 -0.0816 9 6 3.5073 -1.1966 0.1121 10 1 3.8356 -0.2858 0.6130 11 7 3.9381 -2.3657 0.8903 12 6 3.8935 -2.0845 2.3314 13 6 4.8799 -2.9990 3.0603 14 6 4.8339 -2.7057 4.5612 15 6 3.4197 -2.9588 5.0872 16 6 2.4331 -2.0443 4.3583 17 6 2.4792 -2.3376 2.8574 18 6 4.1142 -1.2588 -1.2658 19 6 4.1043 -2.4470 -1.9724 20 6 4.6576 -2.5031 -3.2379 21 6 5.2280 -1.3733 -3.7937 22 6 5.2425 -0.1864 -3.0850 23 6 4.6858 -0.1293 -1.8210 24 1 -0.4850 0.8400 0.0004 25 1 4.8588 -2.6679 0.6092 26 1 4.1652 -1.0436 2.5071 27 1 5.8876 -2.8185 2.6859 28 1 4.6082 -4.0400 2.8847 29 1 5.1059 -1.6649 4.7366 30 1 5.5364 -3.3577 5.0805 31 1 3.1477 -3.9997 4.9119 32 1 3.3870 -2.7503 6.1565 33 1 1.4256 -2.2242 4.7333 34 1 2.7052 -1.0034 4.5336 35 1 1.7767 -1.6857 2.3381 36 1 2.2072 -3.3784 2.6820 37 1 3.6621 -3.3307 -1.5365 38 1 4.6466 -3.4305 -3.7914 39 1 5.6626 -1.4178 -4.7813 40 1 5.6885 0.6963 -3.5191 41 1 4.6971 0.7980 -1.2674 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055014841.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:10 Heat of formation + Delta-G solvation = 5.649064 kcal Electronic energy + Delta-G solvation = -19839.987719 eV Core-core repulsion = 17104.441104 eV Total energy + Delta-G solvation = -2735.546615 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.88231 -37.99937 -34.87855 -32.32046 -30.91345 -30.25144 -30.21659 -27.95977 -26.27904 -22.65032 -22.09430 -21.99323 -21.00538 -19.70638 -19.19645 -16.97185 -16.18169 -15.29893 -14.69123 -14.58572 -14.22186 -14.18639 -13.76113 -13.47895 -13.27030 -12.81973 -12.77595 -12.36211 -12.11634 -11.74843 -11.59925 -11.58124 -11.08688 -10.87512 -10.80255 -10.64356 -10.42011 -10.24528 -10.02831 -9.95346 -9.67401 -9.55392 -9.36526 -8.58706 -8.24814 -7.89266 -7.34274 -6.13058 -4.07473 2.05849 2.11550 3.22593 3.27504 3.31709 4.34223 4.48660 4.88933 5.13229 5.14801 5.18389 5.41806 5.50392 5.55658 5.67638 5.68925 5.80698 5.88425 5.93921 5.97754 6.00053 6.05721 6.17619 6.26348 6.27972 6.33580 6.50076 6.54728 6.57320 6.62255 6.70075 6.77923 6.84022 7.05794 7.10858 7.16232 7.42764 7.46477 7.53468 7.74218 7.98811 8.31115 8.68422 9.00758 9.49655 10.99011 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.017051 B = 0.007997 C = 0.006252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.695000 B = 3500.313681 C = 4477.263349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.074 3.926 3 Si 0.859 3.141 4 H -0.270 1.270 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.474 4.474 8 H 0.085 0.915 9 C 0.208 3.792 10 H 0.022 0.978 11 N -0.672 5.672 12 C 0.103 3.897 13 C -0.121 4.121 14 C -0.114 4.114 15 C -0.117 4.117 16 C -0.121 4.121 17 C -0.109 4.109 18 C -0.047 4.047 19 C -0.099 4.099 20 C -0.126 4.126 21 C -0.148 4.148 22 C -0.123 4.123 23 C -0.137 4.137 24 H 0.264 0.736 25 H 0.317 0.683 26 H 0.030 0.970 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.096 0.904 36 H 0.057 0.943 37 H 0.126 0.874 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.103 -3.532 3.268 11.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.129 4.129 3 Si 0.687 3.313 4 H -0.195 1.195 5 H -0.216 1.216 6 H -0.191 1.191 7 C -0.512 4.512 8 H 0.103 0.897 9 C 0.100 3.900 10 H 0.039 0.961 11 N -0.302 5.302 12 C -0.007 4.007 13 C -0.159 4.159 14 C -0.152 4.152 15 C -0.155 4.155 16 C -0.159 4.159 17 C -0.146 4.146 18 C -0.049 4.049 19 C -0.118 4.118 20 C -0.144 4.144 21 C -0.166 4.166 22 C -0.142 4.142 23 C -0.156 4.156 24 H 0.074 0.926 25 H 0.133 0.867 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.115 0.885 36 H 0.076 0.924 37 H 0.144 0.856 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 9.295 -3.701 3.259 10.523 hybrid contribution 1.076 1.727 -0.095 2.037 sum 10.371 -1.975 3.164 11.021 Atomic orbital electron populations 1.69876 1.05979 1.26878 1.50118 1.24970 0.94675 0.98500 0.94733 0.87205 0.80239 0.84697 0.79143 1.19528 1.21553 1.19052 1.20825 0.87532 0.94635 1.48227 0.89722 1.18933 0.96390 0.88685 0.85953 0.96053 1.60692 1.29595 1.37305 1.02601 1.21345 0.95412 0.95941 0.87971 1.21759 0.98480 1.00803 0.94879 1.21474 0.96885 1.01007 0.95865 1.21541 0.95210 1.00117 0.98625 1.21586 0.98346 0.98907 0.97043 1.21633 0.97409 1.02799 0.92805 1.20758 0.92004 0.92553 0.99541 1.20986 0.98534 0.98444 0.93808 1.21083 0.99528 0.97819 0.95991 1.20871 1.02688 0.93554 0.99509 1.20933 1.00772 0.97421 0.95033 1.20998 1.00189 0.98247 0.96182 0.92564 0.86653 0.95231 0.93014 0.91445 0.92476 0.92669 0.92219 0.92980 0.92441 0.92790 0.88526 0.92391 0.85595 0.87087 0.87330 0.87316 0.87687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.33 13.96 55.43 0.77 -25.56 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.86 21.05 25.06 -169.99 -4.26 16.78 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.27 -6.21 6.06 56.52 0.34 -5.87 16 7 C -0.47 -12.61 6.85 -34.44 -0.24 -12.85 16 8 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 9 C 0.21 4.72 1.87 -70.02 -0.13 4.59 16 10 H 0.02 0.52 4.23 -51.93 -0.22 0.30 16 11 N -0.67 -13.29 5.68 -102.18 -0.58 -13.87 16 12 C 0.10 1.89 2.49 -67.72 -0.17 1.72 16 13 C -0.12 -1.78 5.19 -26.73 -0.14 -1.92 16 14 C -0.11 -1.49 5.92 -26.73 -0.16 -1.65 16 15 C -0.12 -1.56 5.92 -26.73 -0.16 -1.72 16 16 C -0.12 -1.92 5.92 -26.73 -0.16 -2.08 16 17 C -0.11 -2.07 5.18 -26.73 -0.14 -2.21 16 18 C -0.05 -1.01 4.58 -104.62 -0.48 -1.49 16 19 C -0.10 -1.94 9.07 -39.58 -0.36 -2.30 16 20 C -0.13 -2.15 10.05 -39.59 -0.40 -2.55 16 21 C -0.15 -2.44 10.05 -39.58 -0.40 -2.84 16 22 C -0.12 -2.19 10.05 -39.58 -0.40 -2.58 16 23 C -0.14 -2.80 8.83 -39.58 -0.35 -3.15 16 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.32 5.69 7.74 -39.29 -0.30 5.38 16 26 H 0.03 0.59 7.43 -51.93 -0.39 0.20 16 27 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.05 0.87 8.14 -51.92 -0.42 0.44 16 35 H 0.10 2.25 6.19 -51.93 -0.32 1.93 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.13 2.45 7.87 -52.48 -0.41 2.03 16 38 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 39 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 40 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 41 H 0.11 2.15 6.30 -52.49 -0.33 1.82 16 LS Contribution 316.00 15.07 4.76 4.76 Total: -1.00 -28.17 316.00 -9.74 -37.91 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -6.66 Total: 9.02 kcal Atomic # 6 Polarization: -25.28 SS G_CDS: -3.77 Total: -29.05 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.19 Total: -39.43 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.26 Total: 16.78 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.17 -9.74 -37.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055014841.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.556 kcal (2) G-P(sol) polarization free energy of solvation -28.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds