Wall clock time and date at job start Mon Mar 30 2020 07:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 119.99975 * 2 1 4 4 H 1.48495 * 109.47303 * 264.70462 * 3 2 1 5 5 H 1.48502 * 109.47173 * 24.70613 * 3 2 1 6 6 H 1.48500 * 109.47264 * 144.70843 * 3 2 1 7 7 C 1.37878 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00099 * 4.94392 * 7 2 1 9 9 C 1.50697 * 120.00197 * 184.95236 * 7 2 1 10 10 H 1.09005 * 109.47215 * 25.02248 * 9 7 2 11 11 N 1.46904 * 109.47422 * 145.01708 * 9 7 2 12 12 C 1.46893 * 111.00386 * 275.00348 * 11 9 7 13 13 C 1.52997 * 109.47340 * 204.99830 * 12 11 9 14 14 C 1.52996 * 109.47386 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.47152 * 60.00109 * 14 13 12 16 16 C 1.53000 * 109.47236 * 300.00246 * 15 14 13 17 17 C 1.52999 * 109.47089 * 59.99468 * 16 15 14 18 18 C 1.50698 * 109.46921 * 265.02198 * 9 7 2 19 19 C 1.38237 * 120.00006 * 284.93959 * 18 9 7 20 20 C 1.38231 * 119.99820 * 179.81308 * 19 18 9 21 21 C 1.38233 * 120.00448 * 0.39695 * 20 19 18 22 22 C 1.38245 * 119.99591 * 359.85685 * 21 20 19 23 23 C 1.38234 * 119.99905 * 105.21658 * 18 9 7 24 24 H 0.96999 * 120.00071 * 359.97438 * 1 2 3 25 25 H 1.00902 * 110.99901 * 151.04691 * 11 9 7 26 26 H 1.09005 * 109.47047 * 324.99935 * 12 11 9 27 27 H 1.09007 * 109.47288 * 59.99593 * 13 12 11 28 28 H 1.09005 * 109.47137 * 300.00050 * 13 12 11 29 29 H 1.08999 * 109.47656 * 299.99986 * 14 13 12 30 30 H 1.09007 * 109.47087 * 179.97438 * 14 13 12 31 31 H 1.09005 * 109.46833 * 59.99893 * 15 14 13 32 32 H 1.08995 * 109.47324 * 179.97438 * 15 14 13 33 33 H 1.08997 * 109.47638 * 180.02562 * 16 15 14 34 34 H 1.09009 * 109.46656 * 300.00010 * 16 15 14 35 35 H 1.09007 * 109.46925 * 180.02562 * 17 16 15 36 36 H 1.08999 * 109.47454 * 60.00583 * 17 16 15 37 37 H 1.08007 * 119.99584 * 359.97438 * 19 18 9 38 38 H 1.08007 * 119.99815 * 180.22981 * 20 19 18 39 39 H 1.07995 * 120.00416 * 179.83362 * 21 20 19 40 40 H 1.08001 * 119.99499 * 179.97438 * 22 21 20 41 41 H 1.07999 * 120.00402 * 359.97438 * 23 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6085 1.9818 -1.3940 5 1 1.3951 2.6824 0.5852 6 1 3.4863 1.4750 0.8089 7 6 2.0045 -1.1940 -0.0005 8 1 1.4676 -2.1276 -0.0816 9 6 3.5073 -1.1966 0.1121 10 1 3.8356 -0.2858 0.6130 11 7 3.9381 -2.3657 0.8903 12 6 3.8935 -2.0845 2.3314 13 6 4.8799 -2.9990 3.0603 14 6 4.8339 -2.7057 4.5612 15 6 3.4197 -2.9588 5.0872 16 6 2.4331 -2.0443 4.3583 17 6 2.4792 -2.3376 2.8574 18 6 4.1142 -1.2588 -1.2658 19 6 4.1043 -2.4470 -1.9724 20 6 4.6576 -2.5031 -3.2379 21 6 5.2280 -1.3733 -3.7937 22 6 5.2425 -0.1864 -3.0850 23 6 4.6858 -0.1293 -1.8210 24 1 -0.4850 0.8400 0.0004 25 1 4.8588 -2.6679 0.6092 26 1 4.1652 -1.0436 2.5071 27 1 5.8876 -2.8185 2.6859 28 1 4.6082 -4.0400 2.8847 29 1 5.1059 -1.6649 4.7366 30 1 5.5364 -3.3577 5.0805 31 1 3.1477 -3.9997 4.9119 32 1 3.3870 -2.7503 6.1565 33 1 1.4256 -2.2242 4.7333 34 1 2.7052 -1.0034 4.5336 35 1 1.7767 -1.6857 2.3381 36 1 2.2072 -3.3784 2.6820 37 1 3.6621 -3.3307 -1.5365 38 1 4.6466 -3.4305 -3.7914 39 1 5.6626 -1.4178 -4.7813 40 1 5.6885 0.6963 -3.5191 41 1 4.6971 0.7980 -1.2674 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055014841.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:10 Heat of formation + Delta-G solvation = -10.687070 kcal Electronic energy + Delta-G solvation = -19840.696107 eV Core-core repulsion = 17104.441104 eV Total energy + Delta-G solvation = -2736.255003 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.38752 -39.35803 -36.45355 -34.31566 -32.42021 -31.65559 -31.54373 -29.45191 -28.12056 -24.32174 -23.44103 -23.40510 -22.33708 -21.38075 -20.54952 -18.99047 -17.67435 -16.79981 -16.38378 -16.14193 -15.73988 -15.65913 -15.01293 -14.95358 -14.81184 -14.52138 -14.25744 -14.01931 -13.62237 -13.13265 -13.01576 -12.93071 -12.84256 -12.49478 -12.37249 -12.01625 -11.92588 -11.81272 -11.61308 -11.51585 -11.31109 -11.15142 -10.88995 -10.57961 -9.69044 -9.41033 -9.03569 -8.28913 -6.25264 0.60382 0.66581 1.23734 1.26357 1.32053 2.27898 2.94336 3.14963 3.43731 3.92442 3.94553 4.10965 4.20867 4.23736 4.33155 4.39524 4.41603 4.46051 4.59328 4.65639 4.69686 4.76661 4.83260 4.86181 4.94647 5.00618 5.20558 5.21200 5.22794 5.31343 5.34462 5.36269 5.44787 5.55658 5.60263 5.68604 5.72460 5.77211 5.93790 6.12496 6.27610 6.54348 6.76835 6.95871 7.35109 8.87412 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.017051 B = 0.007997 C = 0.006252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.695000 B = 3500.313681 C = 4477.263349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.020 3.980 3 Si 0.914 3.086 4 H -0.261 1.261 5 H -0.291 1.291 6 H -0.252 1.252 7 C -0.459 4.459 8 H 0.038 0.962 9 C 0.218 3.782 10 H 0.008 0.992 11 N -0.676 5.676 12 C 0.101 3.899 13 C -0.112 4.112 14 C -0.111 4.111 15 C -0.112 4.112 16 C -0.118 4.118 17 C -0.104 4.104 18 C -0.075 4.075 19 C -0.114 4.114 20 C -0.122 4.122 21 C -0.136 4.136 22 C -0.124 4.124 23 C -0.158 4.158 24 H 0.263 0.737 25 H 0.330 0.670 26 H 0.012 0.988 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.043 0.957 36 H 0.049 0.951 37 H 0.116 0.884 38 H 0.143 0.857 39 H 0.150 0.850 40 H 0.139 0.861 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.306 -3.900 2.788 14.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.178 4.178 3 Si 0.740 3.260 4 H -0.186 1.186 5 H -0.217 1.217 6 H -0.176 1.176 7 C -0.498 4.498 8 H 0.056 0.944 9 C 0.109 3.891 10 H 0.025 0.975 11 N -0.306 5.306 12 C -0.008 4.008 13 C -0.150 4.150 14 C -0.149 4.149 15 C -0.149 4.149 16 C -0.156 4.156 17 C -0.142 4.142 18 C -0.076 4.076 19 C -0.132 4.132 20 C -0.139 4.139 21 C -0.154 4.154 22 C -0.142 4.142 23 C -0.177 4.177 24 H 0.072 0.928 25 H 0.148 0.852 26 H 0.030 0.970 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.134 0.866 38 H 0.161 0.839 39 H 0.168 0.832 40 H 0.157 0.843 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.534 -4.085 2.781 13.473 hybrid contribution 0.109 1.710 -0.025 1.713 sum 12.643 -2.375 2.756 13.156 Atomic orbital electron populations 1.70022 1.07648 1.27475 1.53116 1.25633 0.95263 1.01826 0.95093 0.86312 0.79394 0.80658 0.79636 1.18638 1.21742 1.17642 1.20852 0.89841 0.92543 1.46530 0.94387 1.18637 0.93794 0.88994 0.87636 0.97472 1.60516 1.30512 1.36149 1.03443 1.21408 0.95898 0.96097 0.87442 1.21691 0.97766 0.99702 0.95872 1.21491 0.97238 1.01761 0.94447 1.21510 0.94407 0.99429 0.99549 1.21551 0.99721 0.99561 0.94790 1.21486 0.96900 1.00813 0.94989 1.20596 0.94330 0.94071 0.98622 1.21017 0.99435 0.97549 0.95215 1.21450 0.97998 0.99671 0.94830 1.21362 1.00879 0.92417 1.00772 1.21315 0.99741 0.99248 0.93855 1.21115 1.01377 0.97515 0.97688 0.92793 0.85153 0.96953 0.91544 0.91143 0.92491 0.89687 0.91725 0.90555 0.92314 0.93225 0.93840 0.93215 0.86607 0.83873 0.83234 0.84272 0.88385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.04 13.96 21.45 0.30 -58.74 16 2 C 0.02 1.14 5.47 84.66 0.46 1.60 16 3 Si 0.91 44.95 25.06 68.60 1.72 46.67 16 4 H -0.26 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 6 H -0.25 -11.68 6.06 99.48 0.60 -11.07 16 7 C -0.46 -25.94 6.85 25.60 0.18 -25.77 16 8 H 0.04 2.45 8.06 -2.91 -0.02 2.42 16 9 C 0.22 10.23 1.87 43.42 0.08 10.31 16 10 H 0.01 0.38 4.23 -2.38 -0.01 0.37 16 11 N -0.68 -27.48 5.68 -477.19 -2.71 -30.19 16 12 C 0.10 3.77 2.49 44.92 0.11 3.88 16 13 C -0.11 -3.10 5.19 30.59 0.16 -2.94 16 14 C -0.11 -2.58 5.92 30.59 0.18 -2.40 16 15 C -0.11 -2.72 5.92 30.59 0.18 -2.54 16 16 C -0.12 -3.78 5.92 30.59 0.18 -3.60 16 17 C -0.10 -4.16 5.18 30.59 0.16 -4.00 16 18 C -0.08 -3.20 4.58 -19.87 -0.09 -3.29 16 19 C -0.11 -4.37 9.07 22.27 0.20 -4.17 16 20 C -0.12 -3.78 10.05 22.27 0.22 -3.56 16 21 C -0.14 -3.90 10.05 22.27 0.22 -3.68 16 22 C -0.12 -3.96 10.05 22.27 0.22 -3.74 16 23 C -0.16 -6.25 8.83 22.27 0.20 -6.05 16 24 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 25 H 0.33 11.86 7.74 -89.69 -0.69 11.17 16 26 H 0.01 0.51 7.43 -2.38 -0.02 0.49 16 27 H 0.07 1.66 8.12 -2.38 -0.02 1.64 16 28 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 29 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 35 H 0.04 2.19 6.19 -2.38 -0.01 2.18 16 36 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.12 4.58 7.87 -2.91 -0.02 4.56 16 38 H 0.14 3.50 8.06 -2.91 -0.02 3.47 16 39 H 0.15 3.11 8.06 -2.91 -0.02 3.08 16 40 H 0.14 3.57 8.06 -2.91 -0.02 3.54 16 41 H 0.10 3.92 6.30 -2.91 -0.02 3.91 16 Total: -1.00 -65.84 316.00 2.18 -63.66 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: 0.20 Total: 28.55 kcal Atomic # 6 Polarization: -52.62 SS G_CDS: 2.67 Total: -49.95 kcal Atomic # 7 Polarization: -86.52 SS G_CDS: -2.41 Total: -88.93 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.72 Total: 46.67 kcal Total: -65.84 2.18 -63.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055014841.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.971 kcal (2) G-P(sol) polarization free energy of solvation -65.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds