Wall clock time and date at job start Mon Mar 30 2020 07:17:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86797 * 119.99975 * 2 1
4 4 H 1.48495 * 109.47303 * 264.70462 * 3 2 1
5 5 H 1.48502 * 109.47173 * 24.70613 * 3 2 1
6 6 H 1.48500 * 109.47264 * 144.70843 * 3 2 1
7 7 C 1.37878 * 120.00080 * 180.02562 * 2 1 3
8 8 H 1.07999 * 120.00099 * 4.94392 * 7 2 1
9 9 C 1.50697 * 120.00197 * 184.95236 * 7 2 1
10 10 H 1.09005 * 109.47215 * 25.02248 * 9 7 2
11 11 N 1.46904 * 109.47422 * 145.01708 * 9 7 2
12 12 C 1.46893 * 111.00386 * 275.00348 * 11 9 7
13 13 C 1.52997 * 109.47340 * 204.99830 * 12 11 9
14 14 C 1.52996 * 109.47386 * 179.97438 * 13 12 11
15 15 C 1.52999 * 109.47152 * 60.00109 * 14 13 12
16 16 C 1.53000 * 109.47236 * 300.00246 * 15 14 13
17 17 C 1.52999 * 109.47089 * 59.99468 * 16 15 14
18 18 C 1.50698 * 109.46921 * 265.02198 * 9 7 2
19 19 C 1.38237 * 120.00006 * 284.93959 * 18 9 7
20 20 C 1.38231 * 119.99820 * 179.81308 * 19 18 9
21 21 C 1.38233 * 120.00448 * 0.39695 * 20 19 18
22 22 C 1.38245 * 119.99591 * 359.85685 * 21 20 19
23 23 C 1.38234 * 119.99905 * 105.21658 * 18 9 7
24 24 H 0.96999 * 120.00071 * 359.97438 * 1 2 3
25 25 H 1.00902 * 110.99901 * 151.04691 * 11 9 7
26 26 H 1.09005 * 109.47047 * 324.99935 * 12 11 9
27 27 H 1.09007 * 109.47288 * 59.99593 * 13 12 11
28 28 H 1.09005 * 109.47137 * 300.00050 * 13 12 11
29 29 H 1.08999 * 109.47656 * 299.99986 * 14 13 12
30 30 H 1.09007 * 109.47087 * 179.97438 * 14 13 12
31 31 H 1.09005 * 109.46833 * 59.99893 * 15 14 13
32 32 H 1.08995 * 109.47324 * 179.97438 * 15 14 13
33 33 H 1.08997 * 109.47638 * 180.02562 * 16 15 14
34 34 H 1.09009 * 109.46656 * 300.00010 * 16 15 14
35 35 H 1.09007 * 109.46925 * 180.02562 * 17 16 15
36 36 H 1.08999 * 109.47454 * 60.00583 * 17 16 15
37 37 H 1.08007 * 119.99584 * 359.97438 * 19 18 9
38 38 H 1.08007 * 119.99815 * 180.22981 * 20 19 18
39 39 H 1.07995 * 120.00416 * 179.83362 * 21 20 19
40 40 H 1.08001 * 119.99499 * 179.97438 * 22 21 20
41 41 H 1.07999 * 120.00402 * 359.97438 * 23 18 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.6085 1.9818 -1.3940
5 1 1.3951 2.6824 0.5852
6 1 3.4863 1.4750 0.8089
7 6 2.0045 -1.1940 -0.0005
8 1 1.4676 -2.1276 -0.0816
9 6 3.5073 -1.1966 0.1121
10 1 3.8356 -0.2858 0.6130
11 7 3.9381 -2.3657 0.8903
12 6 3.8935 -2.0845 2.3314
13 6 4.8799 -2.9990 3.0603
14 6 4.8339 -2.7057 4.5612
15 6 3.4197 -2.9588 5.0872
16 6 2.4331 -2.0443 4.3583
17 6 2.4792 -2.3376 2.8574
18 6 4.1142 -1.2588 -1.2658
19 6 4.1043 -2.4470 -1.9724
20 6 4.6576 -2.5031 -3.2379
21 6 5.2280 -1.3733 -3.7937
22 6 5.2425 -0.1864 -3.0850
23 6 4.6858 -0.1293 -1.8210
24 1 -0.4850 0.8400 0.0004
25 1 4.8588 -2.6679 0.6092
26 1 4.1652 -1.0436 2.5071
27 1 5.8876 -2.8185 2.6859
28 1 4.6082 -4.0400 2.8847
29 1 5.1059 -1.6649 4.7366
30 1 5.5364 -3.3577 5.0805
31 1 3.1477 -3.9997 4.9119
32 1 3.3870 -2.7503 6.1565
33 1 1.4256 -2.2242 4.7333
34 1 2.7052 -1.0034 4.5336
35 1 1.7767 -1.6857 2.3381
36 1 2.2072 -3.3784 2.6820
37 1 3.6621 -3.3307 -1.5365
38 1 4.6466 -3.4305 -3.7914
39 1 5.6626 -1.4178 -4.7813
40 1 5.6885 0.6963 -3.5191
41 1 4.6971 0.7980 -1.2674
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000055014841.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:17:10
Heat of formation + Delta-G solvation = -10.687070 kcal
Electronic energy + Delta-G solvation = -19840.696107 eV
Core-core repulsion = 17104.441104 eV
Total energy + Delta-G solvation = -2736.255003 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 259.163 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-40.38752 -39.35803 -36.45355 -34.31566 -32.42021 -31.65559 -31.54373 -29.45191
-28.12056 -24.32174 -23.44103 -23.40510 -22.33708 -21.38075 -20.54952 -18.99047
-17.67435 -16.79981 -16.38378 -16.14193 -15.73988 -15.65913 -15.01293 -14.95358
-14.81184 -14.52138 -14.25744 -14.01931 -13.62237 -13.13265 -13.01576 -12.93071
-12.84256 -12.49478 -12.37249 -12.01625 -11.92588 -11.81272 -11.61308 -11.51585
-11.31109 -11.15142 -10.88995 -10.57961 -9.69044 -9.41033 -9.03569 -8.28913
-6.25264 0.60382 0.66581 1.23734 1.26357 1.32053 2.27898 2.94336
3.14963 3.43731 3.92442 3.94553 4.10965 4.20867 4.23736 4.33155
4.39524 4.41603 4.46051 4.59328 4.65639 4.69686 4.76661 4.83260
4.86181 4.94647 5.00618 5.20558 5.21200 5.22794 5.31343 5.34462
5.36269 5.44787 5.55658 5.60263 5.68604 5.72460 5.77211 5.93790
6.12496 6.27610 6.54348 6.76835 6.95871 7.35109 8.87412
Molecular weight = 259.16amu
Principal moments of inertia in cm(-1)
A = 0.017051 B = 0.007997 C = 0.006252
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1641.695000 B = 3500.313681 C = 4477.263349
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.942 5.942
2 C 0.020 3.980
3 Si 0.914 3.086
4 H -0.261 1.261
5 H -0.291 1.291
6 H -0.252 1.252
7 C -0.459 4.459
8 H 0.038 0.962
9 C 0.218 3.782
10 H 0.008 0.992
11 N -0.676 5.676
12 C 0.101 3.899
13 C -0.112 4.112
14 C -0.111 4.111
15 C -0.112 4.112
16 C -0.118 4.118
17 C -0.104 4.104
18 C -0.075 4.075
19 C -0.114 4.114
20 C -0.122 4.122
21 C -0.136 4.136
22 C -0.124 4.124
23 C -0.158 4.158
24 H 0.263 0.737
25 H 0.330 0.670
26 H 0.012 0.988
27 H 0.066 0.934
28 H 0.070 0.930
29 H 0.056 0.944
30 H 0.085 0.915
31 H 0.064 0.936
32 H 0.076 0.924
33 H 0.058 0.942
34 H 0.049 0.951
35 H 0.043 0.957
36 H 0.049 0.951
37 H 0.116 0.884
38 H 0.143 0.857
39 H 0.150 0.850
40 H 0.139 0.861
41 H 0.098 0.902
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.306 -3.900 2.788 14.144
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.583 5.583
2 C -0.178 4.178
3 Si 0.740 3.260
4 H -0.186 1.186
5 H -0.217 1.217
6 H -0.176 1.176
7 C -0.498 4.498
8 H 0.056 0.944
9 C 0.109 3.891
10 H 0.025 0.975
11 N -0.306 5.306
12 C -0.008 4.008
13 C -0.150 4.150
14 C -0.149 4.149
15 C -0.149 4.149
16 C -0.156 4.156
17 C -0.142 4.142
18 C -0.076 4.076
19 C -0.132 4.132
20 C -0.139 4.139
21 C -0.154 4.154
22 C -0.142 4.142
23 C -0.177 4.177
24 H 0.072 0.928
25 H 0.148 0.852
26 H 0.030 0.970
27 H 0.085 0.915
28 H 0.089 0.911
29 H 0.075 0.925
30 H 0.103 0.897
31 H 0.083 0.917
32 H 0.094 0.906
33 H 0.077 0.923
34 H 0.068 0.932
35 H 0.062 0.938
36 H 0.068 0.932
37 H 0.134 0.866
38 H 0.161 0.839
39 H 0.168 0.832
40 H 0.157 0.843
41 H 0.116 0.884
Dipole moment (debyes) X Y Z Total
from point charges 12.534 -4.085 2.781 13.473
hybrid contribution 0.109 1.710 -0.025 1.713
sum 12.643 -2.375 2.756 13.156
Atomic orbital electron populations
1.70022 1.07648 1.27475 1.53116 1.25633 0.95263 1.01826 0.95093
0.86312 0.79394 0.80658 0.79636 1.18638 1.21742 1.17642 1.20852
0.89841 0.92543 1.46530 0.94387 1.18637 0.93794 0.88994 0.87636
0.97472 1.60516 1.30512 1.36149 1.03443 1.21408 0.95898 0.96097
0.87442 1.21691 0.97766 0.99702 0.95872 1.21491 0.97238 1.01761
0.94447 1.21510 0.94407 0.99429 0.99549 1.21551 0.99721 0.99561
0.94790 1.21486 0.96900 1.00813 0.94989 1.20596 0.94330 0.94071
0.98622 1.21017 0.99435 0.97549 0.95215 1.21450 0.97998 0.99671
0.94830 1.21362 1.00879 0.92417 1.00772 1.21315 0.99741 0.99248
0.93855 1.21115 1.01377 0.97515 0.97688 0.92793 0.85153 0.96953
0.91544 0.91143 0.92491 0.89687 0.91725 0.90555 0.92314 0.93225
0.93840 0.93215 0.86607 0.83873 0.83234 0.84272 0.88385
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -59.04 13.96 21.45 0.30 -58.74 16
2 C 0.02 1.14 5.47 84.66 0.46 1.60 16
3 Si 0.91 44.95 25.06 68.60 1.72 46.67 16
4 H -0.26 -12.40 7.11 99.48 0.71 -11.69 16
5 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16
6 H -0.25 -11.68 6.06 99.48 0.60 -11.07 16
7 C -0.46 -25.94 6.85 25.60 0.18 -25.77 16
8 H 0.04 2.45 8.06 -2.91 -0.02 2.42 16
9 C 0.22 10.23 1.87 43.42 0.08 10.31 16
10 H 0.01 0.38 4.23 -2.38 -0.01 0.37 16
11 N -0.68 -27.48 5.68 -477.19 -2.71 -30.19 16
12 C 0.10 3.77 2.49 44.92 0.11 3.88 16
13 C -0.11 -3.10 5.19 30.59 0.16 -2.94 16
14 C -0.11 -2.58 5.92 30.59 0.18 -2.40 16
15 C -0.11 -2.72 5.92 30.59 0.18 -2.54 16
16 C -0.12 -3.78 5.92 30.59 0.18 -3.60 16
17 C -0.10 -4.16 5.18 30.59 0.16 -4.00 16
18 C -0.08 -3.20 4.58 -19.87 -0.09 -3.29 16
19 C -0.11 -4.37 9.07 22.27 0.20 -4.17 16
20 C -0.12 -3.78 10.05 22.27 0.22 -3.56 16
21 C -0.14 -3.90 10.05 22.27 0.22 -3.68 16
22 C -0.12 -3.96 10.05 22.27 0.22 -3.74 16
23 C -0.16 -6.25 8.83 22.27 0.20 -6.05 16
24 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16
25 H 0.33 11.86 7.74 -89.69 -0.69 11.17 16
26 H 0.01 0.51 7.43 -2.38 -0.02 0.49 16
27 H 0.07 1.66 8.12 -2.38 -0.02 1.64 16
28 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16
29 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16
30 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16
31 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16
32 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16
33 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16
34 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16
35 H 0.04 2.19 6.19 -2.38 -0.01 2.18 16
36 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16
37 H 0.12 4.58 7.87 -2.91 -0.02 4.56 16
38 H 0.14 3.50 8.06 -2.91 -0.02 3.47 16
39 H 0.15 3.11 8.06 -2.91 -0.02 3.08 16
40 H 0.14 3.57 8.06 -2.91 -0.02 3.54 16
41 H 0.10 3.92 6.30 -2.91 -0.02 3.91 16
Total: -1.00 -65.84 316.00 2.18 -63.66
By element:
Atomic # 1 Polarization: 28.35 SS G_CDS: 0.20 Total: 28.55 kcal
Atomic # 6 Polarization: -52.62 SS G_CDS: 2.67 Total: -49.95 kcal
Atomic # 7 Polarization: -86.52 SS G_CDS: -2.41 Total: -88.93 kcal
Atomic # 14 Polarization: 44.95 SS G_CDS: 1.72 Total: 46.67 kcal
Total: -65.84 2.18 -63.66 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000055014841.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 52.971 kcal
(2) G-P(sol) polarization free energy of solvation -65.838 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.866 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.179 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.659 kcal
(6) G-S(sol) free energy of system = (1) + (5) -10.687 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds