Wall clock time and date at job start Mon Mar 30 2020 07:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 120.00113 * 2 1 4 4 H 1.48505 * 109.47148 * 265.77278 * 3 2 1 5 5 H 1.48497 * 109.46796 * 25.77020 * 3 2 1 6 6 H 1.48501 * 109.47231 * 145.77190 * 3 2 1 7 7 C 1.37877 * 119.99961 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00380 * 353.89101 * 7 2 1 9 9 C 1.50703 * 120.00144 * 173.89896 * 7 2 1 10 10 H 1.09008 * 109.47019 * 355.27219 * 9 7 2 11 11 N 1.46898 * 109.47146 * 235.27529 * 9 7 2 12 12 C 1.46899 * 111.00124 * 84.99364 * 11 9 7 13 13 C 1.53006 * 109.46788 * 85.00696 * 12 11 9 14 14 C 1.53002 * 109.46876 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.46785 * 299.99539 * 14 13 12 16 16 C 1.52998 * 109.47276 * 60.00162 * 15 14 13 17 17 C 1.52998 * 109.47052 * 300.00021 * 16 15 14 18 18 C 1.50697 * 109.47667 * 115.26978 * 9 7 2 19 19 C 1.38237 * 119.99812 * 73.72447 * 18 9 7 20 20 C 1.38230 * 120.00125 * 179.79244 * 19 18 9 21 21 C 1.38235 * 119.99800 * 0.43615 * 20 19 18 22 22 C 1.38229 * 120.00021 * 359.82188 * 21 20 19 23 23 C 1.38231 * 120.00275 * 253.99993 * 18 9 7 24 24 H 0.96998 * 119.99722 * 0.02562 * 1 2 3 25 25 H 1.00892 * 111.00305 * 208.95149 * 11 9 7 26 26 H 1.08993 * 109.47574 * 324.99972 * 12 11 9 27 27 H 1.08992 * 109.47748 * 59.99872 * 13 12 11 28 28 H 1.08999 * 109.46671 * 299.99012 * 13 12 11 29 29 H 1.08994 * 109.47038 * 180.02562 * 14 13 12 30 30 H 1.08993 * 109.47736 * 59.99123 * 14 13 12 31 31 H 1.09001 * 109.47240 * 180.02562 * 15 14 13 32 32 H 1.09006 * 109.46981 * 299.99721 * 15 14 13 33 33 H 1.09002 * 109.46940 * 60.00347 * 16 15 14 34 34 H 1.08999 * 109.46712 * 179.97438 * 16 15 14 35 35 H 1.09006 * 109.47081 * 179.97438 * 17 16 15 36 36 H 1.09001 * 109.47020 * 299.99787 * 17 16 15 37 37 H 1.08004 * 119.99935 * 0.02562 * 19 18 9 38 38 H 1.08005 * 120.00306 * 180.27793 * 20 19 18 39 39 H 1.08004 * 119.99910 * 179.83104 * 21 20 19 40 40 H 1.08007 * 120.00082 * 179.97438 * 22 21 20 41 41 H 1.08000 * 120.00063 * 359.97438 * 23 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.5861 1.9949 -1.3963 5 1 1.4047 2.6768 0.6087 6 1 3.4992 1.4677 0.7875 7 6 2.0045 -1.1941 -0.0005 8 1 1.4691 -2.1268 0.0986 9 6 3.5051 -1.1977 -0.1392 10 1 3.8566 -0.1803 -0.3109 11 7 3.8898 -2.0467 -1.2746 12 6 3.8380 -1.2949 -2.5356 13 6 5.1558 -0.5435 -2.7357 14 6 5.1016 0.2401 -4.0487 15 6 4.8855 -0.7293 -5.2126 16 6 3.5678 -1.4807 -5.0124 17 6 3.6220 -2.2642 -3.6994 18 6 4.1252 -1.7369 1.1240 19 6 4.0613 -3.0894 1.4026 20 6 4.6338 -3.5847 2.5592 21 6 5.2623 -2.7261 3.4417 22 6 5.3214 -1.3729 3.1658 23 6 4.7527 -0.8783 2.0070 24 1 -0.4849 0.8401 -0.0004 25 1 4.8035 -2.4500 -1.1314 26 1 3.0148 -0.5815 -2.4997 27 1 5.9791 -1.2568 -2.7716 28 1 5.3095 0.1475 -1.9068 29 1 6.0405 0.7750 -4.1915 30 1 4.2784 0.9535 -4.0125 31 1 4.8473 -0.1711 -6.1480 32 1 5.7088 -1.4427 -5.2489 33 1 2.7446 -0.7672 -4.9762 34 1 3.4137 -2.1710 -5.8418 35 1 2.6830 -2.7993 -3.5566 36 1 4.4452 -2.9777 -3.7357 37 1 3.5675 -3.7597 0.7146 38 1 4.5879 -4.6420 2.7746 39 1 5.7072 -3.1127 4.3468 40 1 5.8121 -0.7021 3.8555 41 1 4.7991 0.1790 1.7914 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055014843.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:13 Heat of formation + Delta-G solvation = 1.919702 kcal Electronic energy + Delta-G solvation = -19821.039272 eV Core-core repulsion = 17085.330940 eV Total energy + Delta-G solvation = -2735.708332 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.92259 -38.07423 -34.89797 -32.29397 -30.93653 -30.38436 -30.21590 -28.03456 -26.16146 -22.82175 -22.18276 -21.95022 -21.04232 -19.77512 -19.35284 -16.93992 -16.29015 -15.41330 -14.72826 -14.64175 -14.23317 -14.08870 -13.79378 -13.41888 -13.14679 -12.79314 -12.77781 -12.52773 -12.12539 -12.08705 -11.81772 -11.60591 -11.06968 -10.98436 -10.80840 -10.65678 -10.49348 -10.35250 -10.08829 -9.86187 -9.80003 -9.72534 -9.49727 -8.64315 -8.25520 -7.91144 -7.27829 -6.14724 -4.10939 2.06350 2.10633 3.19349 3.26733 3.29352 4.31949 4.48069 4.87705 5.03728 5.11080 5.18105 5.36896 5.50048 5.55944 5.56882 5.66929 5.70518 5.81446 5.87042 5.91409 5.96380 5.99732 6.12207 6.25016 6.26229 6.28531 6.39951 6.44381 6.48849 6.51310 6.59206 6.70188 6.76463 6.89783 6.92991 7.11291 7.16884 7.45469 7.52375 7.73547 8.02184 8.33775 8.66514 8.99271 9.48047 10.98073 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015717 B = 0.008129 C = 0.006549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.132219 B = 3443.769387 C = 4274.433710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.073 3.927 3 Si 0.865 3.135 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.478 4.478 8 H 0.081 0.919 9 C 0.215 3.785 10 H 0.017 0.983 11 N -0.672 5.672 12 C 0.094 3.906 13 C -0.149 4.149 14 C -0.116 4.116 15 C -0.116 4.116 16 C -0.120 4.120 17 C -0.101 4.101 18 C -0.044 4.044 19 C -0.101 4.101 20 C -0.127 4.127 21 C -0.147 4.147 22 C -0.125 4.125 23 C -0.133 4.133 24 H 0.265 0.735 25 H 0.313 0.687 26 H 0.083 0.917 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.126 0.874 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.205 -1.983 -3.836 12.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.130 4.130 3 Si 0.693 3.307 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.516 4.516 8 H 0.099 0.901 9 C 0.108 3.892 10 H 0.035 0.965 11 N -0.300 5.300 12 C -0.016 4.016 13 C -0.189 4.189 14 C -0.154 4.154 15 C -0.153 4.153 16 C -0.158 4.158 17 C -0.140 4.140 18 C -0.045 4.045 19 C -0.119 4.119 20 C -0.145 4.145 21 C -0.166 4.166 22 C -0.143 4.143 23 C -0.152 4.152 24 H 0.075 0.925 25 H 0.130 0.870 26 H 0.101 0.899 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.143 0.857 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 10.376 -2.133 -3.896 11.286 hybrid contribution 1.095 1.670 0.287 2.017 sum 11.470 -0.464 -3.609 12.034 Atomic orbital electron populations 1.69886 1.06115 1.26934 1.49821 1.25065 0.94721 0.98592 0.94590 0.87081 0.80394 0.84437 0.78814 1.20046 1.21374 1.18981 1.20827 0.87878 0.94706 1.48228 0.90110 1.18707 0.96146 0.90422 0.83919 0.96509 1.61015 1.31099 1.36119 1.01788 1.21436 0.95697 0.94560 0.89919 1.22329 0.99791 0.99591 0.97144 1.21478 1.01067 0.97952 0.94949 1.21516 0.98053 0.98204 0.97557 1.21548 0.97355 0.99158 0.97748 1.21452 1.02032 0.97591 0.92880 1.20591 0.92298 0.93319 0.98323 1.21012 0.98623 0.95565 0.96742 1.21076 0.99325 0.98942 0.95197 1.20880 1.02326 0.93782 0.99574 1.20946 1.00834 0.95334 0.97212 1.21098 0.99422 0.99447 0.95230 0.92538 0.87000 0.89907 0.92406 0.92731 0.92790 0.92098 0.92702 0.92386 0.92000 0.92469 0.91140 0.92893 0.85652 0.87114 0.87363 0.87300 0.87083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.63 13.96 55.43 0.77 -25.86 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.86 21.00 26.94 -169.99 -4.58 16.42 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.26 -6.12 5.63 56.52 0.32 -5.80 16 7 C -0.48 -13.01 8.74 -34.44 -0.30 -13.31 16 8 H 0.08 2.46 8.06 -52.49 -0.42 2.03 16 9 C 0.22 4.88 1.95 -70.02 -0.14 4.74 16 10 H 0.02 0.40 3.60 -51.92 -0.19 0.21 16 11 N -0.67 -13.42 5.60 -102.17 -0.57 -13.99 16 12 C 0.09 1.75 2.27 -67.71 -0.15 1.59 16 13 C -0.15 -2.40 5.16 -26.73 -0.14 -2.54 16 14 C -0.12 -1.65 5.92 -26.73 -0.16 -1.81 16 15 C -0.12 -1.47 5.92 -26.73 -0.16 -1.63 16 16 C -0.12 -1.67 5.92 -26.73 -0.16 -1.83 16 17 C -0.10 -1.63 5.53 -26.73 -0.15 -1.78 16 18 C -0.04 -0.93 4.64 -104.63 -0.49 -1.42 16 19 C -0.10 -1.97 9.08 -39.58 -0.36 -2.32 16 20 C -0.13 -2.15 10.05 -39.59 -0.40 -2.55 16 21 C -0.15 -2.38 10.05 -39.59 -0.40 -2.78 16 22 C -0.13 -2.15 10.05 -39.59 -0.40 -2.55 16 23 C -0.13 -2.66 9.67 -39.59 -0.38 -3.04 16 24 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.31 5.69 7.90 -39.30 -0.31 5.38 16 26 H 0.08 1.83 7.64 -51.93 -0.40 1.43 16 27 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 28 H 0.05 0.94 7.43 -51.93 -0.39 0.56 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.13 2.45 7.91 -52.48 -0.42 2.03 16 38 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 39 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 40 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 41 H 0.11 2.22 6.82 -52.49 -0.36 1.86 16 LS Contribution 321.87 15.07 4.85 4.85 Total: -1.00 -28.65 321.87 -10.17 -38.81 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -6.77 Total: 9.03 kcal Atomic # 6 Polarization: -25.39 SS G_CDS: -3.87 Total: -29.26 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.20 Total: -39.85 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.58 Total: 16.42 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.65 -10.17 -38.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055014843.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.731 kcal (2) G-P(sol) polarization free energy of solvation -28.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds