Wall clock time and date at job start Mon Mar 30 2020 07:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 120.00113 * 2 1 4 4 H 1.48505 * 109.47148 * 265.77278 * 3 2 1 5 5 H 1.48497 * 109.46796 * 25.77020 * 3 2 1 6 6 H 1.48501 * 109.47231 * 145.77190 * 3 2 1 7 7 C 1.37877 * 119.99961 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00380 * 353.89101 * 7 2 1 9 9 C 1.50703 * 120.00144 * 173.89896 * 7 2 1 10 10 H 1.09008 * 109.47019 * 355.27219 * 9 7 2 11 11 N 1.46898 * 109.47146 * 235.27529 * 9 7 2 12 12 C 1.46899 * 111.00124 * 84.99364 * 11 9 7 13 13 C 1.53006 * 109.46788 * 85.00696 * 12 11 9 14 14 C 1.53002 * 109.46876 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.46785 * 299.99539 * 14 13 12 16 16 C 1.52998 * 109.47276 * 60.00162 * 15 14 13 17 17 C 1.52998 * 109.47052 * 300.00021 * 16 15 14 18 18 C 1.50697 * 109.47667 * 115.26978 * 9 7 2 19 19 C 1.38237 * 119.99812 * 73.72447 * 18 9 7 20 20 C 1.38230 * 120.00125 * 179.79244 * 19 18 9 21 21 C 1.38235 * 119.99800 * 0.43615 * 20 19 18 22 22 C 1.38229 * 120.00021 * 359.82188 * 21 20 19 23 23 C 1.38231 * 120.00275 * 253.99993 * 18 9 7 24 24 H 0.96998 * 119.99722 * 0.02562 * 1 2 3 25 25 H 1.00892 * 111.00305 * 208.95149 * 11 9 7 26 26 H 1.08993 * 109.47574 * 324.99972 * 12 11 9 27 27 H 1.08992 * 109.47748 * 59.99872 * 13 12 11 28 28 H 1.08999 * 109.46671 * 299.99012 * 13 12 11 29 29 H 1.08994 * 109.47038 * 180.02562 * 14 13 12 30 30 H 1.08993 * 109.47736 * 59.99123 * 14 13 12 31 31 H 1.09001 * 109.47240 * 180.02562 * 15 14 13 32 32 H 1.09006 * 109.46981 * 299.99721 * 15 14 13 33 33 H 1.09002 * 109.46940 * 60.00347 * 16 15 14 34 34 H 1.08999 * 109.46712 * 179.97438 * 16 15 14 35 35 H 1.09006 * 109.47081 * 179.97438 * 17 16 15 36 36 H 1.09001 * 109.47020 * 299.99787 * 17 16 15 37 37 H 1.08004 * 119.99935 * 0.02562 * 19 18 9 38 38 H 1.08005 * 120.00306 * 180.27793 * 20 19 18 39 39 H 1.08004 * 119.99910 * 179.83104 * 21 20 19 40 40 H 1.08007 * 120.00082 * 179.97438 * 22 21 20 41 41 H 1.08000 * 120.00063 * 359.97438 * 23 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.5861 1.9949 -1.3963 5 1 1.4047 2.6768 0.6087 6 1 3.4992 1.4677 0.7875 7 6 2.0045 -1.1941 -0.0005 8 1 1.4691 -2.1268 0.0986 9 6 3.5051 -1.1977 -0.1392 10 1 3.8566 -0.1803 -0.3109 11 7 3.8898 -2.0467 -1.2746 12 6 3.8380 -1.2949 -2.5356 13 6 5.1558 -0.5435 -2.7357 14 6 5.1016 0.2401 -4.0487 15 6 4.8855 -0.7293 -5.2126 16 6 3.5678 -1.4807 -5.0124 17 6 3.6220 -2.2642 -3.6994 18 6 4.1252 -1.7369 1.1240 19 6 4.0613 -3.0894 1.4026 20 6 4.6338 -3.5847 2.5592 21 6 5.2623 -2.7261 3.4417 22 6 5.3214 -1.3729 3.1658 23 6 4.7527 -0.8783 2.0070 24 1 -0.4849 0.8401 -0.0004 25 1 4.8035 -2.4500 -1.1314 26 1 3.0148 -0.5815 -2.4997 27 1 5.9791 -1.2568 -2.7716 28 1 5.3095 0.1475 -1.9068 29 1 6.0405 0.7750 -4.1915 30 1 4.2784 0.9535 -4.0125 31 1 4.8473 -0.1711 -6.1480 32 1 5.7088 -1.4427 -5.2489 33 1 2.7446 -0.7672 -4.9762 34 1 3.4137 -2.1710 -5.8418 35 1 2.6830 -2.7993 -3.5566 36 1 4.4452 -2.9777 -3.7357 37 1 3.5675 -3.7597 0.7146 38 1 4.5879 -4.6420 2.7746 39 1 5.7072 -3.1127 4.3468 40 1 5.8121 -0.7021 3.8555 41 1 4.7991 0.1790 1.7914 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055014843.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:12 Heat of formation + Delta-G solvation = -14.325726 kcal Electronic energy + Delta-G solvation = -19821.743727 eV Core-core repulsion = 17085.330940 eV Total energy + Delta-G solvation = -2736.412787 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.40119 -39.40367 -36.46754 -34.30940 -32.41681 -31.64529 -31.59790 -29.52592 -27.99141 -24.46448 -23.46177 -23.34272 -22.35291 -21.46682 -20.64402 -19.02641 -17.73287 -16.79884 -16.50031 -16.18314 -15.77618 -15.33842 -15.03815 -14.98935 -14.67600 -14.47094 -14.25021 -14.01831 -13.63962 -13.49311 -13.11414 -13.03718 -12.83611 -12.64512 -12.21022 -12.03899 -11.90715 -11.77301 -11.73712 -11.51595 -11.39584 -11.09678 -11.05219 -10.72996 -9.67543 -9.41066 -8.93009 -8.32925 -6.32806 0.62782 0.67462 1.22833 1.24650 1.33259 2.25531 2.91300 3.14397 3.50898 3.83503 3.91524 4.10706 4.16285 4.25634 4.32625 4.36581 4.40602 4.44139 4.57013 4.60261 4.63879 4.72506 4.79397 4.84166 4.91300 4.94132 5.13009 5.18422 5.23592 5.25848 5.28973 5.32831 5.37031 5.52299 5.54451 5.58163 5.71100 5.74608 5.95307 6.13711 6.29091 6.54005 6.70172 6.98377 7.30789 8.84246 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015717 B = 0.008129 C = 0.006549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.132219 B = 3443.769387 C = 4274.433710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.017 3.983 3 Si 0.923 3.077 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.245 1.245 7 C -0.475 4.475 8 H 0.032 0.968 9 C 0.226 3.774 10 H 0.010 0.990 11 N -0.677 5.677 12 C 0.092 3.908 13 C -0.143 4.143 14 C -0.117 4.117 15 C -0.109 4.109 16 C -0.118 4.118 17 C -0.096 4.096 18 C -0.074 4.074 19 C -0.117 4.117 20 C -0.124 4.124 21 C -0.136 4.136 22 C -0.122 4.122 23 C -0.152 4.152 24 H 0.265 0.735 25 H 0.328 0.672 26 H 0.037 0.963 27 H 0.078 0.922 28 H 0.038 0.962 29 H 0.077 0.923 30 H 0.042 0.958 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.043 0.957 34 H 0.079 0.921 35 H 0.044 0.956 36 H 0.072 0.928 37 H 0.112 0.888 38 H 0.142 0.858 39 H 0.150 0.850 40 H 0.142 0.858 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.741 -2.201 -3.491 15.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.180 4.180 3 Si 0.748 3.252 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.169 1.169 7 C -0.514 4.514 8 H 0.050 0.950 9 C 0.118 3.882 10 H 0.028 0.972 11 N -0.307 5.307 12 C -0.018 4.018 13 C -0.182 4.182 14 C -0.155 4.155 15 C -0.147 4.147 16 C -0.156 4.156 17 C -0.134 4.134 18 C -0.075 4.075 19 C -0.135 4.135 20 C -0.141 4.141 21 C -0.154 4.154 22 C -0.140 4.140 23 C -0.171 4.171 24 H 0.074 0.926 25 H 0.146 0.854 26 H 0.056 0.944 27 H 0.097 0.903 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.098 0.902 35 H 0.063 0.937 36 H 0.091 0.909 37 H 0.130 0.870 38 H 0.159 0.841 39 H 0.167 0.833 40 H 0.159 0.841 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 13.944 -2.366 -3.558 14.584 hybrid contribution 0.022 1.566 0.238 1.585 sum 13.966 -0.799 -3.320 14.377 Atomic orbital electron populations 1.70040 1.07926 1.27743 1.52633 1.25811 0.95379 1.02234 0.94623 0.86123 0.79750 0.79915 0.79368 1.19321 1.21329 1.16905 1.20968 0.90594 0.92659 1.47193 0.95005 1.18406 0.93187 0.90726 0.85888 0.97243 1.60779 1.32115 1.36146 1.01664 1.21446 0.95775 0.94470 0.90081 1.22237 0.98481 0.99601 0.97865 1.21505 1.01586 0.97946 0.94445 1.21495 0.97389 0.98147 0.97636 1.21547 0.97946 0.99140 0.97007 1.21396 1.01409 0.97462 0.93165 1.20469 0.94578 0.94506 0.97921 1.21019 0.99582 0.94835 0.98089 1.21426 0.97966 1.00824 0.93928 1.21370 1.00589 0.93150 1.00284 1.21324 0.99734 0.96560 0.96378 1.21197 1.00467 0.99039 0.96358 0.92638 0.85438 0.94442 0.90306 0.94332 0.90423 0.93959 0.90622 0.90624 0.93828 0.90206 0.93705 0.90929 0.86991 0.84057 0.83269 0.84069 0.87720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.82 13.96 21.45 0.30 -59.52 16 2 C 0.02 1.02 5.47 84.66 0.46 1.49 16 3 Si 0.92 44.96 26.94 68.60 1.85 46.81 16 4 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.25 -11.03 5.63 99.48 0.56 -10.47 16 7 C -0.48 -27.52 8.74 25.60 0.22 -27.30 16 8 H 0.03 2.09 8.06 -2.91 -0.02 2.07 16 9 C 0.23 10.62 1.95 43.42 0.08 10.70 16 10 H 0.01 0.47 3.60 -2.38 -0.01 0.47 16 11 N -0.68 -27.94 5.60 -477.17 -2.67 -30.62 16 12 C 0.09 3.51 2.27 44.92 0.10 3.61 16 13 C -0.14 -4.44 5.16 30.60 0.16 -4.28 16 14 C -0.12 -3.09 5.92 30.60 0.18 -2.91 16 15 C -0.11 -2.45 5.92 30.60 0.18 -2.27 16 16 C -0.12 -3.16 5.92 30.59 0.18 -2.98 16 17 C -0.10 -3.09 5.53 30.59 0.17 -2.93 16 18 C -0.07 -3.14 4.64 -19.87 -0.09 -3.23 16 19 C -0.12 -4.52 9.08 22.27 0.20 -4.32 16 20 C -0.12 -3.84 10.05 22.27 0.22 -3.62 16 21 C -0.14 -3.82 10.05 22.27 0.22 -3.60 16 22 C -0.12 -3.78 10.05 22.27 0.22 -3.56 16 23 C -0.15 -5.87 9.67 22.27 0.22 -5.65 16 24 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 25 H 0.33 11.94 7.90 -89.70 -0.71 11.24 16 26 H 0.04 1.75 7.64 -2.39 -0.02 1.73 16 27 H 0.08 2.12 8.13 -2.39 -0.02 2.10 16 28 H 0.04 1.31 7.43 -2.39 -0.02 1.29 16 29 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.08 1.43 8.14 -2.39 -0.02 1.42 16 32 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 36 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.11 4.52 7.91 -2.91 -0.02 4.50 16 38 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 39 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 40 H 0.14 3.44 8.06 -2.91 -0.02 3.41 16 41 H 0.10 4.08 6.82 -2.91 -0.02 4.06 16 Total: -1.00 -67.17 321.87 2.36 -64.82 By element: Atomic # 1 Polarization: 29.21 SS G_CDS: 0.14 Total: 29.35 kcal Atomic # 6 Polarization: -53.59 SS G_CDS: 2.74 Total: -50.85 kcal Atomic # 7 Polarization: -87.76 SS G_CDS: -2.37 Total: -90.13 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.85 Total: 46.81 kcal Total: -67.17 2.36 -64.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055014843.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.494 kcal (2) G-P(sol) polarization free energy of solvation -67.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds