Wall clock time and date at job start Mon Mar 30 2020 07:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99995 * 2 1 4 4 H 1.48495 * 109.46844 * 95.18980 * 3 2 1 5 5 H 1.48502 * 109.47036 * 215.18647 * 3 2 1 6 6 H 1.48499 * 109.47061 * 335.18649 * 3 2 1 7 7 C 1.37877 * 119.99593 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00489 * 7.55585 * 7 2 1 9 9 C 1.50707 * 119.99609 * 187.56460 * 7 2 1 10 10 H 1.09000 * 109.47159 * 358.81627 * 9 7 2 11 11 N 1.46895 * 109.46878 * 238.81298 * 9 7 2 12 12 C 1.46902 * 110.99953 * 85.00579 * 11 9 7 13 13 C 1.53002 * 109.47261 * 179.97438 * 12 11 9 14 14 C 1.54261 * 110.03006 * 292.90312 * 13 12 11 15 15 C 1.54957 * 104.15975 * 217.13677 * 14 13 12 16 16 C 1.54891 * 102.77972 * 37.88821 * 15 14 13 17 17 C 1.53872 * 110.02981 * 175.68774 * 13 12 11 18 18 C 1.50707 * 109.47082 * 118.81552 * 9 7 2 19 19 C 1.38229 * 119.99870 * 74.05492 * 18 9 7 20 20 C 1.38238 * 119.99917 * 179.78641 * 19 18 9 21 21 C 1.38236 * 119.99750 * 0.44466 * 20 19 18 22 22 C 1.38233 * 120.00057 * 359.80993 * 21 20 19 23 23 C 1.38227 * 119.99921 * 359.97438 * 22 21 20 24 24 H 0.97005 * 120.00100 * 359.97438 * 1 2 3 25 25 H 1.00901 * 111.00298 * 321.04451 * 11 9 7 26 26 H 1.09005 * 109.46603 * 299.99906 * 12 11 9 27 27 H 1.09000 * 109.47226 * 59.99260 * 12 11 9 28 28 H 1.09003 * 110.01483 * 54.29654 * 13 12 11 29 29 H 1.09006 * 110.48725 * 335.78724 * 14 13 12 30 30 H 1.09003 * 110.48582 * 98.42761 * 14 13 12 31 31 H 1.08999 * 110.72058 * 279.57265 * 15 14 13 32 32 H 1.09002 * 110.92283 * 156.29787 * 15 14 13 33 33 H 1.08996 * 110.48727 * 203.40176 * 16 15 14 34 34 H 1.09003 * 110.59519 * 80.81444 * 16 15 14 35 35 H 1.08999 * 110.02892 * 238.56424 * 17 13 12 36 36 H 1.08998 * 110.03627 * 359.97438 * 17 13 12 37 37 H 1.08003 * 120.00259 * 0.02562 * 19 18 9 38 38 H 1.08002 * 120.00081 * 180.27339 * 20 19 18 39 39 H 1.08002 * 119.99796 * 179.82684 * 21 20 19 40 40 H 1.08001 * 119.99894 * 179.97438 * 22 21 20 41 41 H 1.08002 * 120.00335 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6063 1.9830 1.3943 5 1 3.4876 1.4743 -0.8068 6 1 1.3961 2.6818 -0.5876 7 6 2.0044 -1.1941 -0.0005 8 1 1.4715 -2.1253 -0.1239 9 6 3.5017 -1.1999 0.1713 10 1 3.8612 -0.1747 0.2597 11 7 4.1258 -1.8388 -0.9949 12 6 4.3179 -0.8726 -2.0846 13 6 4.9693 -1.5733 -3.2786 14 6 6.4089 -1.9973 -2.9215 15 6 7.2074 -1.7671 -4.2293 16 6 6.5807 -0.4658 -4.7888 17 6 5.0783 -0.6002 -4.4656 18 6 3.8614 -1.9676 1.4172 19 6 3.7746 -3.3471 1.4282 20 6 4.1088 -4.0516 2.5697 21 6 4.5209 -3.3760 3.7030 22 6 4.6026 -1.9961 3.6937 23 6 4.2727 -1.2919 2.5509 24 1 -0.4850 0.8401 0.0004 25 1 3.5846 -2.6317 -1.3057 26 1 3.3519 -0.4661 -2.3841 27 1 4.9626 -0.0629 -1.7428 28 1 4.3828 -2.4465 -3.5643 29 1 6.8026 -1.3730 -2.1193 30 1 6.4372 -3.0491 -2.6365 31 1 7.0601 -2.5956 -4.9220 32 1 8.2674 -1.6256 -4.0184 33 1 6.7349 -0.4005 -5.8658 34 1 7.0015 0.4076 -4.2904 35 1 4.5454 -1.0016 -5.3276 36 1 4.6667 0.3711 -4.1912 37 1 3.4494 -3.8748 0.5438 38 1 4.0452 -5.1298 2.5769 39 1 4.7793 -3.9262 4.5957 40 1 4.9242 -1.4682 4.5793 41 1 4.3362 -0.2138 2.5436 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055016405.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:17 Heat of formation + Delta-G solvation = 0.689454 kcal Electronic energy + Delta-G solvation = -19409.653694 eV Core-core repulsion = 16673.892014 eV Total energy + Delta-G solvation = -2735.761680 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.67136 -38.05175 -35.29470 -32.38460 -31.07877 -30.15803 -28.69868 -28.36170 -26.32115 -23.45597 -22.37086 -21.57202 -20.44933 -19.82267 -19.19936 -17.16278 -16.19647 -15.61836 -15.01433 -14.76167 -14.32443 -14.20951 -13.61154 -13.43883 -13.07219 -13.00773 -12.68757 -12.56053 -12.06061 -11.81047 -11.59698 -11.11894 -11.05015 -10.93527 -10.79539 -10.68974 -10.60276 -10.44383 -10.34018 -10.06000 -9.91111 -9.81417 -9.43189 -8.74410 -8.18575 -7.89856 -7.26689 -6.25717 -4.26791 2.14625 2.21525 3.17033 3.24830 3.26071 4.25573 4.56091 4.80604 4.90544 4.97503 5.12004 5.30510 5.56054 5.59483 5.60817 5.67076 5.73770 5.84101 5.84904 5.91731 5.97469 6.04647 6.11601 6.17464 6.27194 6.31072 6.35513 6.40841 6.48453 6.51308 6.60199 6.72728 6.78772 6.83063 6.88896 7.17509 7.27428 7.40049 7.56313 7.79845 8.00567 8.27991 8.52473 8.79884 9.36974 10.86822 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014102 B = 0.007665 C = 0.005615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.041372 B = 3652.131436 C = 4985.437261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.080 3.920 3 Si 0.868 3.132 4 H -0.274 1.274 5 H -0.260 1.260 6 H -0.287 1.287 7 C -0.535 4.535 8 H 0.077 0.923 9 C 0.206 3.794 10 H 0.048 0.952 11 N -0.685 5.685 12 C 0.072 3.928 13 C -0.089 4.089 14 C -0.103 4.103 15 C -0.129 4.129 16 C -0.123 4.123 17 C -0.121 4.121 18 C -0.014 4.014 19 C -0.103 4.103 20 C -0.126 4.126 21 C -0.151 4.151 22 C -0.123 4.123 23 C -0.133 4.133 24 H 0.266 0.734 25 H 0.332 0.668 26 H 0.033 0.967 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.114 0.886 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.643 -2.800 -3.410 12.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.125 4.125 3 Si 0.695 3.305 4 H -0.199 1.199 5 H -0.185 1.185 6 H -0.213 1.213 7 C -0.574 4.574 8 H 0.095 0.905 9 C 0.098 3.902 10 H 0.066 0.934 11 N -0.314 5.314 12 C -0.057 4.057 13 C -0.108 4.108 14 C -0.141 4.141 15 C -0.166 4.166 16 C -0.161 4.161 17 C -0.160 4.160 18 C -0.015 4.015 19 C -0.121 4.121 20 C -0.144 4.144 21 C -0.169 4.169 22 C -0.141 4.141 23 C -0.152 4.152 24 H 0.076 0.924 25 H 0.149 0.851 26 H 0.051 0.949 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.132 0.868 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 12.104 -2.595 -3.176 12.780 hybrid contribution -0.818 1.120 -0.167 1.396 sum 11.286 -1.475 -3.342 11.863 Atomic orbital electron populations 1.69920 1.06366 1.27272 1.48751 1.25105 0.94698 0.98986 0.93676 0.87017 0.80441 0.83836 0.79180 1.19926 1.18455 1.21347 1.21516 0.90148 0.95063 1.50657 0.90535 1.18601 0.93343 0.92831 0.85404 0.93371 1.61013 1.53966 1.09933 1.06510 1.21920 0.98382 0.94764 0.90671 1.21780 0.96692 0.97856 0.94464 1.22271 0.94176 1.01332 0.96292 1.22560 0.98908 0.97297 0.97855 1.22337 0.95870 0.98014 0.99859 1.22187 0.96027 0.99875 0.97877 1.20265 0.91397 0.93847 0.95976 1.20816 0.99779 0.94048 0.97450 1.21017 1.00651 0.98953 0.93758 1.20833 1.03740 0.94373 0.97996 1.20919 1.01287 0.94294 0.97597 1.20939 1.01421 0.99265 0.93527 0.92404 0.85128 0.94873 0.92523 0.91475 0.91463 0.91856 0.92069 0.92248 0.92394 0.91987 0.92222 0.91858 0.86758 0.87302 0.87458 0.87329 0.87371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.96 55.43 0.77 -25.49 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 3 Si 0.87 20.76 26.96 -169.99 -4.58 16.18 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.26 -5.88 6.13 56.52 0.35 -5.53 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.54 -14.25 8.58 -34.44 -0.30 -14.54 16 8 H 0.08 2.24 8.06 -52.49 -0.42 1.81 16 9 C 0.21 4.68 2.15 -70.01 -0.15 4.53 16 10 H 0.05 1.14 4.23 -51.93 -0.22 0.92 16 11 N -0.68 -13.62 5.64 -109.18 -0.62 -14.24 16 12 C 0.07 1.36 4.12 -3.82 -0.02 1.34 16 13 C -0.09 -1.35 3.09 -89.50 -0.28 -1.63 16 14 C -0.10 -1.43 6.18 -25.04 -0.15 -1.59 16 15 C -0.13 -1.50 6.91 -24.70 -0.17 -1.67 16 16 C -0.12 -1.45 6.83 -25.07 -0.17 -1.63 16 17 C -0.12 -1.65 6.46 -25.62 -0.17 -1.81 16 18 C -0.01 -0.29 4.93 -104.62 -0.52 -0.81 16 19 C -0.10 -2.02 9.27 -39.58 -0.37 -2.39 16 20 C -0.13 -2.18 10.05 -39.58 -0.40 -2.58 16 21 C -0.15 -2.52 10.05 -39.58 -0.40 -2.91 16 22 C -0.12 -2.16 10.05 -39.59 -0.40 -2.56 16 23 C -0.13 -2.68 9.67 -39.59 -0.38 -3.07 16 24 H 0.27 7.42 8.31 -40.82 -0.34 7.09 16 25 H 0.33 6.56 7.92 -39.29 -0.31 6.24 16 26 H 0.03 0.70 8.00 -51.93 -0.42 0.28 16 27 H 0.06 1.09 7.70 -51.93 -0.40 0.69 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.07 1.01 7.77 -51.93 -0.40 0.61 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.90 7.67 -51.93 -0.40 0.50 16 37 H 0.11 2.17 7.46 -52.48 -0.39 1.78 16 38 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 39 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 40 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 41 H 0.11 2.12 8.00 -52.49 -0.42 1.70 16 LS Contribution 326.97 15.07 4.93 4.93 Total: -1.00 -28.30 326.97 -10.25 -38.56 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -6.80 Total: 9.25 kcal Atomic # 6 Polarization: -25.22 SS G_CDS: -3.96 Total: -29.18 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.16 Total: -39.73 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.58 Total: 16.18 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.30 -10.25 -38.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055016405.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.247 kcal (2) G-P(sol) polarization free energy of solvation -28.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds