Wall clock time and date at job start Mon Mar 30 2020 07:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99995 * 2 1 4 4 H 1.48495 * 109.46844 * 95.18980 * 3 2 1 5 5 H 1.48502 * 109.47036 * 215.18647 * 3 2 1 6 6 H 1.48499 * 109.47061 * 335.18649 * 3 2 1 7 7 C 1.37877 * 119.99593 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00489 * 7.55585 * 7 2 1 9 9 C 1.50707 * 119.99609 * 187.56460 * 7 2 1 10 10 H 1.09000 * 109.47159 * 358.81627 * 9 7 2 11 11 N 1.46895 * 109.46878 * 238.81298 * 9 7 2 12 12 C 1.46902 * 110.99953 * 85.00579 * 11 9 7 13 13 C 1.53002 * 109.47261 * 179.97438 * 12 11 9 14 14 C 1.54261 * 110.03006 * 292.90312 * 13 12 11 15 15 C 1.54957 * 104.15975 * 217.13677 * 14 13 12 16 16 C 1.54891 * 102.77972 * 37.88821 * 15 14 13 17 17 C 1.53872 * 110.02981 * 175.68774 * 13 12 11 18 18 C 1.50707 * 109.47082 * 118.81552 * 9 7 2 19 19 C 1.38229 * 119.99870 * 74.05492 * 18 9 7 20 20 C 1.38238 * 119.99917 * 179.78641 * 19 18 9 21 21 C 1.38236 * 119.99750 * 0.44466 * 20 19 18 22 22 C 1.38233 * 120.00057 * 359.80993 * 21 20 19 23 23 C 1.38227 * 119.99921 * 359.97438 * 22 21 20 24 24 H 0.97005 * 120.00100 * 359.97438 * 1 2 3 25 25 H 1.00901 * 111.00298 * 321.04451 * 11 9 7 26 26 H 1.09005 * 109.46603 * 299.99906 * 12 11 9 27 27 H 1.09000 * 109.47226 * 59.99260 * 12 11 9 28 28 H 1.09003 * 110.01483 * 54.29654 * 13 12 11 29 29 H 1.09006 * 110.48725 * 335.78724 * 14 13 12 30 30 H 1.09003 * 110.48582 * 98.42761 * 14 13 12 31 31 H 1.08999 * 110.72058 * 279.57265 * 15 14 13 32 32 H 1.09002 * 110.92283 * 156.29787 * 15 14 13 33 33 H 1.08996 * 110.48727 * 203.40176 * 16 15 14 34 34 H 1.09003 * 110.59519 * 80.81444 * 16 15 14 35 35 H 1.08999 * 110.02892 * 238.56424 * 17 13 12 36 36 H 1.08998 * 110.03627 * 359.97438 * 17 13 12 37 37 H 1.08003 * 120.00259 * 0.02562 * 19 18 9 38 38 H 1.08002 * 120.00081 * 180.27339 * 20 19 18 39 39 H 1.08002 * 119.99796 * 179.82684 * 21 20 19 40 40 H 1.08001 * 119.99894 * 179.97438 * 22 21 20 41 41 H 1.08002 * 120.00335 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6063 1.9830 1.3943 5 1 3.4876 1.4743 -0.8068 6 1 1.3961 2.6818 -0.5876 7 6 2.0044 -1.1941 -0.0005 8 1 1.4715 -2.1253 -0.1239 9 6 3.5017 -1.1999 0.1713 10 1 3.8612 -0.1747 0.2597 11 7 4.1258 -1.8388 -0.9949 12 6 4.3179 -0.8726 -2.0846 13 6 4.9693 -1.5733 -3.2786 14 6 6.4089 -1.9973 -2.9215 15 6 7.2074 -1.7671 -4.2293 16 6 6.5807 -0.4658 -4.7888 17 6 5.0783 -0.6002 -4.4656 18 6 3.8614 -1.9676 1.4172 19 6 3.7746 -3.3471 1.4282 20 6 4.1088 -4.0516 2.5697 21 6 4.5209 -3.3760 3.7030 22 6 4.6026 -1.9961 3.6937 23 6 4.2727 -1.2919 2.5509 24 1 -0.4850 0.8401 0.0004 25 1 3.5846 -2.6317 -1.3057 26 1 3.3519 -0.4661 -2.3841 27 1 4.9626 -0.0629 -1.7428 28 1 4.3828 -2.4465 -3.5643 29 1 6.8026 -1.3730 -2.1193 30 1 6.4372 -3.0491 -2.6365 31 1 7.0601 -2.5956 -4.9220 32 1 8.2674 -1.6256 -4.0184 33 1 6.7349 -0.4005 -5.8658 34 1 7.0015 0.4076 -4.2904 35 1 4.5454 -1.0016 -5.3276 36 1 4.6667 0.3711 -4.1912 37 1 3.4494 -3.8748 0.5438 38 1 4.0452 -5.1298 2.5769 39 1 4.7793 -3.9262 4.5957 40 1 4.9242 -1.4682 4.5793 41 1 4.3362 -0.2138 2.5436 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055016405.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:16 Heat of formation + Delta-G solvation = -14.565973 kcal Electronic energy + Delta-G solvation = -19410.315219 eV Core-core repulsion = 16673.892014 eV Total energy + Delta-G solvation = -2736.423205 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.15614 -39.26041 -36.89839 -34.38319 -32.58447 -31.59353 -30.02725 -29.47059 -28.11242 -25.06228 -23.93747 -23.01840 -21.49737 -21.37646 -20.49574 -19.19203 -17.64736 -16.88368 -16.62643 -16.23572 -15.84879 -15.61732 -15.10900 -14.90777 -14.73154 -14.28421 -14.13006 -14.02546 -13.72805 -13.45647 -13.15810 -12.93353 -12.61426 -12.14094 -11.96140 -11.90208 -11.85659 -11.79869 -11.75903 -11.42391 -11.38857 -11.28646 -11.23553 -10.81863 -9.63198 -9.42486 -8.99051 -8.41035 -6.44646 0.68912 0.75328 1.23689 1.25659 1.33982 2.22197 2.89915 3.19047 3.52439 3.83508 3.84594 3.99148 4.15024 4.29323 4.36646 4.41648 4.51672 4.58916 4.62402 4.70829 4.73049 4.79737 4.87975 4.90536 4.93365 5.01350 5.04145 5.12962 5.23012 5.28026 5.31359 5.38838 5.43084 5.48909 5.52829 5.61482 5.75609 5.80149 5.97595 6.05401 6.32533 6.43026 6.61974 6.77067 7.22642 8.75295 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014102 B = 0.007665 C = 0.005615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.041372 B = 3652.131436 C = 4985.437261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.025 3.975 3 Si 0.925 3.075 4 H -0.266 1.266 5 H -0.245 1.245 6 H -0.286 1.286 7 C -0.529 4.529 8 H 0.037 0.963 9 C 0.214 3.786 10 H 0.040 0.960 11 N -0.672 5.672 12 C 0.075 3.925 13 C -0.086 4.086 14 C -0.101 4.101 15 C -0.121 4.121 16 C -0.119 4.119 17 C -0.123 4.123 18 C -0.048 4.048 19 C -0.120 4.120 20 C -0.125 4.125 21 C -0.143 4.143 22 C -0.122 4.122 23 C -0.155 4.155 24 H 0.266 0.734 25 H 0.331 0.669 26 H 0.004 0.996 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.109 0.891 38 H 0.140 0.860 39 H 0.147 0.853 40 H 0.141 0.859 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.290 -3.337 -2.898 14.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.174 4.174 3 Si 0.750 3.250 4 H -0.191 1.191 5 H -0.169 1.169 6 H -0.212 1.212 7 C -0.568 4.568 8 H 0.055 0.945 9 C 0.105 3.895 10 H 0.058 0.942 11 N -0.300 5.300 12 C -0.055 4.055 13 C -0.105 4.105 14 C -0.139 4.139 15 C -0.158 4.158 16 C -0.157 4.157 17 C -0.161 4.161 18 C -0.049 4.049 19 C -0.138 4.138 20 C -0.142 4.142 21 C -0.160 4.160 22 C -0.140 4.140 23 C -0.174 4.174 24 H 0.076 0.924 25 H 0.148 0.852 26 H 0.022 0.978 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.127 0.873 38 H 0.158 0.842 39 H 0.165 0.835 40 H 0.158 0.842 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 14.779 -3.143 -2.668 15.343 hybrid contribution -1.637 1.142 -0.259 2.013 sum 13.141 -2.001 -2.927 13.611 Atomic orbital electron populations 1.70055 1.08085 1.28100 1.51388 1.25871 0.95335 1.02524 0.93703 0.86088 0.79665 0.79556 0.79715 1.19073 1.16869 1.21249 1.21699 0.92323 0.93332 1.49429 0.94521 1.18433 0.90639 0.93090 0.87299 0.94224 1.61014 1.52873 1.09818 1.06319 1.21961 0.97068 0.94793 0.91650 1.21756 0.97313 0.97888 0.93524 1.22217 0.93402 1.00889 0.97349 1.22530 0.99275 0.97575 0.96447 1.22335 0.94063 0.98094 1.01197 1.22204 0.97846 0.98719 0.97340 1.20237 0.94079 0.94799 0.95768 1.20920 1.00633 0.93607 0.98658 1.21392 0.99278 1.00603 0.92972 1.21328 1.01566 0.94224 0.98929 1.21299 1.00033 0.95048 0.97578 1.21112 1.02479 0.99483 0.94285 0.92437 0.85222 0.97789 0.93089 0.91626 0.92817 0.91909 0.90896 0.90792 0.90368 0.92021 0.91153 0.93046 0.87282 0.84202 0.83481 0.84158 0.87683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.97 13.96 21.45 0.30 -57.67 16 2 C 0.03 1.45 5.47 84.65 0.46 1.92 16 3 Si 0.93 43.99 26.96 68.60 1.85 45.84 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.24 -10.88 6.13 99.48 0.61 -10.27 16 6 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 7 C -0.53 -29.50 8.58 25.60 0.22 -29.28 16 8 H 0.04 2.28 8.06 -2.91 -0.02 2.26 16 9 C 0.21 10.01 2.15 43.43 0.09 10.10 16 10 H 0.04 1.90 4.23 -2.39 -0.01 1.89 16 11 N -0.67 -27.47 5.64 -499.33 -2.82 -30.28 16 12 C 0.08 2.87 4.12 86.30 0.36 3.23 16 13 C -0.09 -2.58 3.09 -10.07 -0.03 -2.61 16 14 C -0.10 -2.68 6.18 31.69 0.20 -2.49 16 15 C -0.12 -2.50 6.91 31.91 0.22 -2.28 16 16 C -0.12 -2.52 6.83 31.67 0.22 -2.31 16 17 C -0.12 -3.19 6.46 31.32 0.20 -2.99 16 18 C -0.05 -2.07 4.93 -19.87 -0.10 -2.17 16 19 C -0.12 -4.69 9.27 22.27 0.21 -4.49 16 20 C -0.12 -4.01 10.05 22.27 0.22 -3.78 16 21 C -0.14 -4.21 10.05 22.27 0.22 -3.98 16 22 C -0.12 -3.93 10.05 22.27 0.22 -3.71 16 23 C -0.15 -6.15 9.67 22.27 0.22 -5.93 16 24 H 0.27 15.50 8.31 -92.70 -0.77 14.73 16 25 H 0.33 13.64 7.92 -89.69 -0.71 12.93 16 26 H 0.00 0.17 8.00 -2.38 -0.02 0.15 16 27 H 0.05 1.99 7.70 -2.39 -0.02 1.97 16 28 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.05 1.57 7.77 -2.38 -0.02 1.55 16 30 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16 32 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.05 1.45 7.67 -2.39 -0.02 1.43 16 37 H 0.11 4.24 7.46 -2.91 -0.02 4.22 16 38 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 39 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 40 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 41 H 0.11 4.10 8.00 -2.91 -0.02 4.08 16 Total: -1.00 -63.79 326.97 2.45 -61.34 By element: Atomic # 1 Polarization: 31.35 SS G_CDS: 0.18 Total: 31.54 kcal Atomic # 6 Polarization: -53.70 SS G_CDS: 2.93 Total: -50.77 kcal Atomic # 7 Polarization: -85.44 SS G_CDS: -2.52 Total: -87.95 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.85 Total: 45.84 kcal Total: -63.79 2.45 -61.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055016405.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.778 kcal (2) G-P(sol) polarization free energy of solvation -63.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds