Wall clock time and date at job start Mon Mar 30 2020 07:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46902 * 110.01566 * 2 1 4 4 C 1.46896 * 110.99973 * 58.61254 * 3 2 1 5 5 H 1.08998 * 109.47449 * 34.99839 * 4 3 2 6 6 C 1.50706 * 109.47257 * 274.99922 * 4 3 2 7 7 H 1.08008 * 119.99448 * 329.57036 * 6 4 3 8 8 C 1.37875 * 120.00292 * 149.57585 * 6 4 3 9 9 N 1.31516 * 119.99981 * 182.88351 * 8 6 4 10 10 Si 1.86795 * 119.99948 * 2.87419 * 8 6 4 11 11 H 1.48502 * 109.46910 * 84.77931 * 10 8 6 12 12 H 1.48504 * 109.47321 * 204.77624 * 10 8 6 13 13 H 1.48501 * 109.47514 * 324.78148 * 10 8 6 14 14 C 1.50704 * 109.47374 * 155.00042 * 4 3 2 15 15 C 1.38228 * 120.00013 * 46.20546 * 14 4 3 16 16 C 1.38239 * 120.00305 * 180.02562 * 15 14 4 17 17 C 1.38237 * 119.99667 * 0.07631 * 16 15 14 18 18 C 1.38236 * 119.99706 * 359.97438 * 17 16 15 19 19 C 1.38234 * 120.00686 * 359.97438 * 18 17 16 20 20 C 1.54260 * 110.07264 * 121.41800 * 2 1 3 21 21 C 1.54899 * 104.19350 * 95.69760 * 20 2 1 22 22 C 1.54887 * 102.74899 * 37.94103 * 21 20 2 23 23 C 1.53878 * 110.03106 * 238.61234 * 2 1 3 24 24 H 1.08997 * 109.47181 * 60.69723 * 1 2 3 25 25 H 1.09000 * 109.47238 * 180.70083 * 1 2 3 26 26 H 1.09006 * 109.46876 * 300.70188 * 1 2 3 27 27 H 1.00903 * 110.99679 * 182.56098 * 3 2 1 28 28 H 0.97001 * 119.99811 * 179.97438 * 9 8 6 29 29 H 1.08007 * 120.00076 * 0.11819 * 15 14 4 30 30 H 1.07997 * 120.00347 * 180.34456 * 16 15 14 31 31 H 1.07992 * 120.00071 * 179.97438 * 17 16 15 32 32 H 1.08003 * 119.99378 * 179.97438 * 18 17 16 33 33 H 1.07997 * 120.00397 * 179.97438 * 19 18 17 34 34 H 1.08996 * 110.48625 * 214.37216 * 20 2 1 35 35 H 1.08994 * 110.49217 * 337.01850 * 20 2 1 36 36 H 1.08993 * 110.75431 * 279.62568 * 21 20 2 37 37 H 1.08997 * 110.75006 * 156.25477 * 21 20 2 38 38 H 1.08993 * 110.48902 * 203.37995 * 22 21 20 39 39 H 1.09007 * 110.59931 * 80.79105 * 22 21 20 40 40 H 1.08997 * 110.03217 * 359.94940 * 23 2 1 41 41 H 1.08997 * 110.03025 * 121.33069 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0328 1.3803 0.0000 4 6 1.5419 2.1194 1.1707 5 1 1.4766 1.4454 2.0248 6 6 0.1774 2.6850 0.8718 7 1 -0.0833 2.9602 -0.1396 8 6 -0.7381 2.8513 1.8893 9 7 -1.9478 3.2915 1.6200 10 14 -0.2602 2.4512 3.6502 11 1 0.4205 3.6233 4.2568 12 1 -1.4800 2.1275 4.4328 13 1 0.6589 1.2848 3.6609 14 6 2.4929 3.2440 1.4899 15 6 2.9602 4.0621 0.4784 16 6 3.8330 5.0934 0.7711 17 6 4.2397 5.3056 2.0751 18 6 3.7732 4.4868 3.0865 19 6 2.8996 3.4561 2.7940 20 6 2.0594 -0.7553 1.2365 21 6 2.3298 -2.1898 0.7183 22 6 2.8884 -1.9396 -0.7045 23 6 2.0571 -0.7530 -1.2341 24 1 -0.3633 0.5029 -0.8961 25 1 -0.3634 -1.0276 0.0126 26 1 -0.3633 0.5247 0.8837 27 1 3.0408 1.3979 -0.0421 28 1 -2.5919 3.4082 2.3358 29 1 2.6422 3.8965 -0.5404 30 1 4.1937 5.7360 -0.0184 31 1 4.9218 6.1110 2.3037 32 1 4.0913 4.6523 4.1052 33 1 2.5355 2.8162 3.5841 34 1 2.9819 -0.2994 1.5959 35 1 1.3076 -0.7701 2.0254 36 1 1.4053 -2.7653 0.6746 37 1 3.0699 -2.6922 1.3411 38 1 2.7415 -2.8186 -1.3321 39 1 3.9452 -1.6757 -0.6607 40 1 1.2229 -1.1191 -1.8325 41 1 2.6852 -0.0939 -1.8334 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055017761.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:54 Heat of formation + Delta-G solvation = 17.403648 kcal Electronic energy + Delta-G solvation = -20234.218485 eV Core-core repulsion = 17499.181587 eV Total energy + Delta-G solvation = -2735.036898 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.18879 -38.14329 -34.57888 -32.11678 -30.80804 -30.22525 -28.44104 -28.15147 -26.84428 -24.00147 -22.52182 -21.87076 -20.52626 -19.76905 -18.21261 -16.94396 -16.20575 -15.54630 -15.18062 -14.53876 -14.29553 -14.11335 -13.34291 -13.28679 -13.04747 -12.83135 -12.52334 -12.38696 -12.02292 -11.76927 -11.48494 -11.08668 -10.85982 -10.81387 -10.73709 -10.69993 -10.56500 -10.25106 -10.16249 -10.08903 -9.85799 -9.70646 -9.41954 -8.57099 -8.23633 -7.89161 -7.31295 -6.11814 -4.03957 2.06081 2.12077 3.22513 3.27689 3.32330 4.34489 4.49230 4.89099 4.99460 5.08637 5.17721 5.34912 5.50595 5.55895 5.69334 5.76978 5.87386 5.88300 5.93301 5.95058 5.99561 6.15459 6.18641 6.24400 6.27686 6.38822 6.52441 6.58495 6.60108 6.64906 6.71089 6.76381 6.83178 7.08849 7.11092 7.16555 7.47294 7.51330 7.55115 7.75002 7.99914 8.32296 8.69540 9.01738 9.49983 11.00411 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015539 B = 0.009433 C = 0.007235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.452561 B = 2967.601597 C = 3869.399759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.124 3.876 3 N -0.664 5.664 4 C 0.207 3.793 5 H 0.027 0.973 6 C -0.470 4.470 7 H 0.084 0.916 8 C 0.073 3.927 9 N -0.892 5.892 10 Si 0.855 3.145 11 H -0.269 1.269 12 H -0.290 1.290 13 H -0.264 1.264 14 C -0.048 4.048 15 C -0.098 4.098 16 C -0.127 4.127 17 C -0.147 4.147 18 C -0.124 4.124 19 C -0.138 4.138 20 C -0.153 4.153 21 C -0.121 4.121 22 C -0.124 4.124 23 C -0.114 4.114 24 H 0.058 0.942 25 H 0.029 0.971 26 H 0.086 0.914 27 H 0.317 0.683 28 H 0.264 0.736 29 H 0.126 0.874 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.416 -5.643 -0.851 11.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.032 3.968 3 N -0.293 5.293 4 C 0.099 3.901 5 H 0.044 0.956 6 C -0.508 4.508 7 H 0.102 0.898 8 C -0.130 4.130 9 N -0.530 5.530 10 Si 0.683 3.317 11 H -0.194 1.194 12 H -0.216 1.216 13 H -0.189 1.189 14 C -0.049 4.049 15 C -0.116 4.116 16 C -0.145 4.145 17 C -0.166 4.166 18 C -0.142 4.142 19 C -0.157 4.157 20 C -0.192 4.192 21 C -0.159 4.159 22 C -0.162 4.162 23 C -0.152 4.152 24 H 0.077 0.923 25 H 0.048 0.952 26 H 0.105 0.895 27 H 0.134 0.866 28 H 0.074 0.926 29 H 0.144 0.856 30 H 0.129 0.871 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.701 -5.343 -1.200 11.140 hybrid contribution 0.613 -0.351 1.944 2.069 sum 10.314 -5.694 0.745 11.805 Atomic orbital electron populations 1.21973 0.92674 0.98684 1.05256 1.21425 0.96322 0.87347 0.91682 1.60812 1.12081 1.11983 1.44385 1.18863 0.93240 0.88990 0.89047 0.95574 1.20839 0.93303 1.39961 0.96702 0.89757 1.24932 0.94840 0.95150 0.98064 1.69870 1.04354 1.46211 1.32578 0.87272 0.78049 0.79719 0.86631 1.19438 1.21647 1.18898 1.20775 0.92779 0.98930 0.92430 1.20987 0.96300 0.94393 0.99943 1.21088 0.99000 0.98285 0.96111 1.20866 1.02077 1.00225 0.93410 1.20927 0.98670 0.96224 0.98389 1.21013 0.98931 0.99130 0.96635 1.23190 1.00607 0.95783 0.99654 1.22428 1.00246 0.97097 0.96159 1.22362 0.99279 0.98210 0.96375 1.22262 0.99305 0.96009 0.97657 0.92291 0.95249 0.89497 0.86595 0.92599 0.85606 0.87092 0.87342 0.87354 0.87705 0.92364 0.91802 0.91713 0.92504 0.92323 0.92218 0.91710 0.91339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 7.15 37.16 0.27 -2.32 16 2 C 0.12 2.21 0.85 -130.48 -0.11 2.10 16 3 N -0.66 -12.93 5.38 -94.33 -0.51 -13.44 16 4 C 0.21 4.59 1.34 -70.01 -0.09 4.50 16 5 H 0.03 0.62 3.55 -51.93 -0.18 0.43 16 6 C -0.47 -12.36 6.33 -34.44 -0.22 -12.58 16 7 H 0.08 2.49 8.06 -52.48 -0.42 2.07 16 8 C 0.07 2.00 4.94 -17.82 -0.09 1.91 16 9 N -0.89 -26.34 13.96 55.43 0.77 -25.57 16 10 Si 0.86 20.89 24.63 -169.99 -4.19 16.70 16 11 H -0.27 -6.56 7.10 56.52 0.40 -6.15 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.26 -6.10 6.11 56.52 0.35 -5.75 16 14 C -0.05 -1.01 4.49 -104.62 -0.47 -1.48 16 15 C -0.10 -1.91 9.08 -39.58 -0.36 -2.27 16 16 C -0.13 -2.18 10.05 -39.58 -0.40 -2.57 16 17 C -0.15 -2.45 10.05 -39.58 -0.40 -2.84 16 18 C -0.12 -2.21 10.05 -39.58 -0.40 -2.61 16 19 C -0.14 -2.82 8.57 -39.58 -0.34 -3.16 16 20 C -0.15 -2.56 4.58 -25.07 -0.11 -2.68 16 21 C -0.12 -1.66 6.91 -24.73 -0.17 -1.83 16 22 C -0.12 -1.59 6.83 -25.07 -0.17 -1.77 16 23 C -0.11 -1.71 6.20 -25.61 -0.16 -1.87 16 24 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 25 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.09 2.03 5.37 -51.93 -0.28 1.75 16 27 H 0.32 5.69 8.09 -39.29 -0.32 5.38 16 28 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.13 2.45 7.91 -52.48 -0.42 2.04 16 30 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 31 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 32 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 33 H 0.10 2.15 6.18 -52.49 -0.32 1.82 16 34 H 0.06 0.98 8.01 -51.93 -0.42 0.56 16 35 H 0.06 1.17 7.68 -51.93 -0.40 0.77 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.95 7.67 -51.93 -0.40 0.55 16 41 H 0.07 1.01 7.90 -51.93 -0.41 0.60 16 LS Contribution 313.47 15.07 4.72 4.72 Total: -1.00 -28.03 313.47 -8.99 -37.02 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -6.56 Total: 10.02 kcal Atomic # 6 Polarization: -26.24 SS G_CDS: -3.22 Total: -29.46 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.27 Total: -39.00 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.19 Total: 16.70 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.03 -8.99 -37.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055017761.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.421 kcal (2) G-P(sol) polarization free energy of solvation -28.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds