Wall clock time and date at job start Mon Mar 30 2020 07:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46902 * 110.01566 * 2 1 4 4 C 1.46896 * 110.99973 * 58.61254 * 3 2 1 5 5 H 1.08998 * 109.47449 * 34.99839 * 4 3 2 6 6 C 1.50706 * 109.47257 * 274.99922 * 4 3 2 7 7 H 1.08008 * 119.99448 * 329.57036 * 6 4 3 8 8 C 1.37875 * 120.00292 * 149.57585 * 6 4 3 9 9 N 1.31516 * 119.99981 * 182.88351 * 8 6 4 10 10 Si 1.86795 * 119.99948 * 2.87419 * 8 6 4 11 11 H 1.48502 * 109.46910 * 84.77931 * 10 8 6 12 12 H 1.48504 * 109.47321 * 204.77624 * 10 8 6 13 13 H 1.48501 * 109.47514 * 324.78148 * 10 8 6 14 14 C 1.50704 * 109.47374 * 155.00042 * 4 3 2 15 15 C 1.38228 * 120.00013 * 46.20546 * 14 4 3 16 16 C 1.38239 * 120.00305 * 180.02562 * 15 14 4 17 17 C 1.38237 * 119.99667 * 0.07631 * 16 15 14 18 18 C 1.38236 * 119.99706 * 359.97438 * 17 16 15 19 19 C 1.38234 * 120.00686 * 359.97438 * 18 17 16 20 20 C 1.54260 * 110.07264 * 121.41800 * 2 1 3 21 21 C 1.54899 * 104.19350 * 95.69760 * 20 2 1 22 22 C 1.54887 * 102.74899 * 37.94103 * 21 20 2 23 23 C 1.53878 * 110.03106 * 238.61234 * 2 1 3 24 24 H 1.08997 * 109.47181 * 60.69723 * 1 2 3 25 25 H 1.09000 * 109.47238 * 180.70083 * 1 2 3 26 26 H 1.09006 * 109.46876 * 300.70188 * 1 2 3 27 27 H 1.00903 * 110.99679 * 182.56098 * 3 2 1 28 28 H 0.97001 * 119.99811 * 179.97438 * 9 8 6 29 29 H 1.08007 * 120.00076 * 0.11819 * 15 14 4 30 30 H 1.07997 * 120.00347 * 180.34456 * 16 15 14 31 31 H 1.07992 * 120.00071 * 179.97438 * 17 16 15 32 32 H 1.08003 * 119.99378 * 179.97438 * 18 17 16 33 33 H 1.07997 * 120.00397 * 179.97438 * 19 18 17 34 34 H 1.08996 * 110.48625 * 214.37216 * 20 2 1 35 35 H 1.08994 * 110.49217 * 337.01850 * 20 2 1 36 36 H 1.08993 * 110.75431 * 279.62568 * 21 20 2 37 37 H 1.08997 * 110.75006 * 156.25477 * 21 20 2 38 38 H 1.08993 * 110.48902 * 203.37995 * 22 21 20 39 39 H 1.09007 * 110.59931 * 80.79105 * 22 21 20 40 40 H 1.08997 * 110.03217 * 359.94940 * 23 2 1 41 41 H 1.08997 * 110.03025 * 121.33069 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0328 1.3803 0.0000 4 6 1.5419 2.1194 1.1707 5 1 1.4766 1.4454 2.0248 6 6 0.1774 2.6850 0.8718 7 1 -0.0833 2.9602 -0.1396 8 6 -0.7381 2.8513 1.8893 9 7 -1.9478 3.2915 1.6200 10 14 -0.2602 2.4512 3.6502 11 1 0.4205 3.6233 4.2568 12 1 -1.4800 2.1275 4.4328 13 1 0.6589 1.2848 3.6609 14 6 2.4929 3.2440 1.4899 15 6 2.9602 4.0621 0.4784 16 6 3.8330 5.0934 0.7711 17 6 4.2397 5.3056 2.0751 18 6 3.7732 4.4868 3.0865 19 6 2.8996 3.4561 2.7940 20 6 2.0594 -0.7553 1.2365 21 6 2.3298 -2.1898 0.7183 22 6 2.8884 -1.9396 -0.7045 23 6 2.0571 -0.7530 -1.2341 24 1 -0.3633 0.5029 -0.8961 25 1 -0.3634 -1.0276 0.0126 26 1 -0.3633 0.5247 0.8837 27 1 3.0408 1.3979 -0.0421 28 1 -2.5919 3.4082 2.3358 29 1 2.6422 3.8965 -0.5404 30 1 4.1937 5.7360 -0.0184 31 1 4.9218 6.1110 2.3037 32 1 4.0913 4.6523 4.1052 33 1 2.5355 2.8162 3.5841 34 1 2.9819 -0.2994 1.5959 35 1 1.3076 -0.7701 2.0254 36 1 1.4053 -2.7653 0.6746 37 1 3.0699 -2.6922 1.3411 38 1 2.7415 -2.8186 -1.3321 39 1 3.9452 -1.6757 -0.6607 40 1 1.2229 -1.1191 -1.8325 41 1 2.6852 -0.0939 -1.8334 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055017761.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:54 Heat of formation + Delta-G solvation = 1.048028 kcal Electronic energy + Delta-G solvation = -20234.927718 eV Core-core repulsion = 17499.181587 eV Total energy + Delta-G solvation = -2735.746131 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.66830 -39.52336 -36.15292 -34.09021 -32.24757 -31.65970 -29.76042 -29.62282 -28.70289 -25.47100 -24.18792 -23.31411 -21.82727 -21.19362 -19.72879 -18.91512 -17.70225 -16.98185 -16.52680 -16.30104 -15.83152 -15.60751 -14.94988 -14.67338 -14.56632 -14.36777 -14.10945 -13.90145 -13.47890 -13.35556 -12.98372 -12.93102 -12.48252 -12.42585 -12.15123 -11.95159 -11.89794 -11.81871 -11.65367 -11.49167 -11.43435 -11.31455 -11.22419 -10.63830 -9.68410 -9.40136 -8.93612 -8.26358 -6.19957 0.60481 0.67187 1.24804 1.27488 1.32933 2.29480 2.96742 3.16576 3.47414 3.77476 3.85668 4.08653 4.14905 4.22919 4.32912 4.40588 4.54818 4.55753 4.61301 4.62924 4.76059 4.82553 4.85194 4.96180 4.99939 5.03207 5.07295 5.16386 5.23217 5.25690 5.30165 5.35036 5.48375 5.53820 5.62849 5.69006 5.72886 5.78005 5.95606 6.15426 6.28145 6.60466 6.80501 6.98785 7.37774 8.90135 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015539 B = 0.009433 C = 0.007235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.452561 B = 2967.601597 C = 3869.399759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.117 3.883 3 N -0.669 5.669 4 C 0.218 3.782 5 H 0.017 0.983 6 C -0.452 4.452 7 H 0.037 0.963 8 C 0.021 3.979 9 N -0.944 5.944 10 Si 0.908 3.092 11 H -0.263 1.263 12 H -0.294 1.294 13 H -0.248 1.248 14 C -0.074 4.074 15 C -0.113 4.113 16 C -0.123 4.123 17 C -0.137 4.137 18 C -0.125 4.125 19 C -0.159 4.159 20 C -0.152 4.152 21 C -0.115 4.115 22 C -0.115 4.115 23 C -0.110 4.110 24 H 0.034 0.966 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.329 0.671 28 H 0.262 0.738 29 H 0.116 0.884 30 H 0.143 0.857 31 H 0.149 0.851 32 H 0.138 0.862 33 H 0.098 0.902 34 H 0.057 0.943 35 H 0.041 0.959 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.732 -6.143 -0.285 15.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.026 3.974 3 N -0.299 5.299 4 C 0.109 3.891 5 H 0.035 0.965 6 C -0.490 4.490 7 H 0.055 0.945 8 C -0.177 4.177 9 N -0.586 5.586 10 Si 0.735 3.265 11 H -0.188 1.188 12 H -0.221 1.221 13 H -0.172 1.172 14 C -0.076 4.076 15 C -0.132 4.132 16 C -0.141 4.141 17 C -0.155 4.155 18 C -0.143 4.143 19 C -0.178 4.178 20 C -0.191 4.191 21 C -0.153 4.153 22 C -0.152 4.152 23 C -0.148 4.148 24 H 0.054 0.946 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.147 0.853 28 H 0.071 0.929 29 H 0.134 0.866 30 H 0.160 0.840 31 H 0.167 0.833 32 H 0.156 0.844 33 H 0.116 0.884 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 13.056 -5.860 -0.642 14.326 hybrid contribution -0.348 -0.137 1.663 1.705 sum 12.709 -5.997 1.021 14.090 Atomic orbital electron populations 1.21846 0.94887 0.99122 1.02099 1.21546 0.94601 0.87063 0.94214 1.60655 1.12892 1.13141 1.43196 1.18544 0.91662 0.89458 0.89404 0.96539 1.20868 0.95559 1.38362 0.94255 0.94469 1.25549 0.94688 0.95642 1.01791 1.70017 1.05704 1.49291 1.33551 0.86409 0.77733 0.80223 0.82171 1.18829 1.22121 1.17195 1.20641 0.94296 0.99017 0.93596 1.21026 0.97471 0.95491 0.99189 1.21452 0.97557 0.97373 0.97670 1.21347 1.01357 1.00252 0.92527 1.21309 0.97465 0.95135 1.00399 1.21128 1.00311 1.00453 0.95910 1.23113 0.99690 0.98039 0.98305 1.22423 1.01161 0.94835 0.96865 1.22331 0.99286 0.97813 0.95793 1.22206 0.99766 0.96698 0.96138 0.94631 0.92990 0.93295 0.85265 0.92912 0.86641 0.83954 0.83320 0.84397 0.88385 0.92432 0.94005 0.91351 0.90501 0.90009 0.91051 0.91562 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.10 7.15 71.98 0.51 -4.59 16 2 C 0.12 4.17 0.85 4.25 0.00 4.18 16 3 N -0.67 -26.53 5.38 -452.37 -2.44 -28.96 16 4 C 0.22 9.94 1.34 43.43 0.06 10.00 16 5 H 0.02 0.80 3.55 -2.39 -0.01 0.79 16 6 C -0.45 -25.07 6.33 25.60 0.16 -24.91 16 7 H 0.04 2.36 8.06 -2.91 -0.02 2.34 16 8 C 0.02 1.18 4.94 84.65 0.42 1.60 16 9 N -0.94 -58.92 13.96 21.45 0.30 -58.62 16 10 Si 0.91 44.53 24.63 68.60 1.69 46.22 16 11 H -0.26 -12.55 7.10 99.48 0.71 -11.84 16 12 H -0.29 -14.48 7.11 99.48 0.71 -13.78 16 13 H -0.25 -11.32 6.11 99.48 0.61 -10.71 16 14 C -0.07 -3.14 4.49 -19.87 -0.09 -3.23 16 15 C -0.11 -4.36 9.08 22.27 0.20 -4.16 16 16 C -0.12 -3.84 10.05 22.27 0.22 -3.62 16 17 C -0.14 -3.96 10.05 22.27 0.22 -3.73 16 18 C -0.13 -4.04 10.05 22.27 0.22 -3.82 16 19 C -0.16 -6.28 8.57 22.27 0.19 -6.09 16 20 C -0.15 -4.95 4.58 31.67 0.15 -4.81 16 21 C -0.12 -2.82 6.91 31.89 0.22 -2.60 16 22 C -0.11 -2.55 6.83 31.67 0.22 -2.33 16 23 C -0.11 -3.12 6.20 31.32 0.19 -2.92 16 24 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.05 2.41 5.37 -2.38 -0.01 2.39 16 27 H 0.33 11.74 8.09 -89.69 -0.73 11.01 16 28 H 0.26 15.53 8.31 -92.71 -0.77 14.75 16 29 H 0.12 4.58 7.91 -2.91 -0.02 4.55 16 30 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 31 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 32 H 0.14 3.59 8.06 -2.91 -0.02 3.56 16 33 H 0.10 3.91 6.18 -2.91 -0.02 3.90 16 34 H 0.06 1.87 8.01 -2.39 -0.02 1.85 16 35 H 0.04 1.52 7.68 -2.39 -0.02 1.50 16 36 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 40 H 0.07 1.85 7.67 -2.39 -0.02 1.83 16 41 H 0.07 1.97 7.90 -2.39 -0.02 1.95 16 Total: -1.00 -64.74 313.47 2.64 -62.11 By element: Atomic # 1 Polarization: 30.11 SS G_CDS: 0.18 Total: 30.28 kcal Atomic # 6 Polarization: -53.93 SS G_CDS: 2.91 Total: -51.02 kcal Atomic # 7 Polarization: -85.45 SS G_CDS: -2.14 Total: -87.59 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.69 Total: 46.22 kcal Total: -64.74 2.64 -62.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055017761.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.153 kcal (2) G-P(sol) polarization free energy of solvation -64.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds