Wall clock time and date at job start Mon Mar 30 2020 07:17:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86803 * 119.99996 * 2 1
4 4 H 1.48501 * 109.47205 * 179.97438 * 3 2 1
5 5 H 1.48502 * 109.46991 * 299.99871 * 3 2 1
6 6 H 1.48494 * 109.47183 * 59.99703 * 3 2 1
7 7 C 1.37878 * 120.00233 * 179.97438 * 2 1 3
8 8 H 1.07994 * 120.00110 * 185.45911 * 7 2 1
9 9 C 1.50707 * 119.99813 * 5.46618 * 7 2 1
10 10 H 1.09002 * 109.46880 * 334.84940 * 9 7 2
11 11 C 1.50699 * 109.47295 * 94.85073 * 9 7 2
12 12 C 1.38238 * 119.99863 * 253.09914 * 11 9 7
13 13 C 1.38228 * 120.00073 * 180.02562 * 12 11 9
14 14 C 1.38231 * 120.00101 * 359.95677 * 13 12 11
15 15 C 1.38239 * 119.99775 * 0.27314 * 14 13 12
16 16 C 1.38228 * 119.99836 * 359.53519 * 15 14 13
17 17 N 1.46899 * 109.46629 * 214.85239 * 9 7 2
18 18 C 1.48001 * 110.99645 * 188.71778 * 17 9 7
19 19 C 1.50438 * 112.82893 * 191.34501 * 18 17 9
20 20 C 1.54311 * 108.50590 * 93.72655 * 19 18 17
21 21 C 1.45880 * 112.18379 * 281.46843 * 20 19 18
22 22 C 1.54310 * 112.18341 * 61.11376 * 21 20 19
23 23 C 1.47995 * 111.00550 * 59.99849 * 17 9 7
24 24 H 0.97003 * 119.99978 * 0.02562 * 1 2 3
25 25 H 1.08005 * 119.99727 * 359.97438 * 12 11 9
26 26 H 1.07997 * 120.00121 * 179.97438 * 13 12 11
27 27 H 1.07996 * 120.00449 * 180.02562 * 14 13 12
28 28 H 1.08008 * 119.99854 * 179.72534 * 15 14 13
29 29 H 1.08003 * 119.99769 * 180.20929 * 16 15 14
30 30 H 1.09000 * 108.81177 * 312.20877 * 18 17 9
31 31 H 1.09005 * 108.81633 * 70.47762 * 18 17 9
32 32 H 1.09001 * 109.63486 * 334.01993 * 19 18 17
33 33 H 1.09008 * 109.63463 * 213.43210 * 19 18 17
34 34 H 1.08990 * 108.94350 * 160.76696 * 20 19 18
35 35 H 1.09005 * 108.93423 * 42.15812 * 20 19 18
36 36 H 1.09001 * 108.93456 * 300.42016 * 21 20 19
37 37 H 1.08994 * 108.93904 * 181.81311 * 21 20 19
38 38 H 1.09008 * 109.63246 * 161.76046 * 22 21 20
39 39 H 1.08999 * 109.63457 * 41.16800 * 22 21 20
40 40 H 1.08995 * 108.81360 * 205.70103 * 23 17 9
41 41 H 1.08998 * 108.80834 * 323.97457 * 23 17 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 3.7092 1.3464 0.0006
5 1 1.8904 2.3964 -1.2125
6 1 1.8904 2.3965 1.2124
7 6 2.0046 -1.1940 0.0005
8 1 3.0809 -1.1961 0.0895
9 6 1.2562 -2.4963 -0.1232
10 1 0.2360 -2.3647 0.2372
11 6 1.2273 -2.9238 -1.5680
12 6 0.0549 -2.8274 -2.2940
13 6 0.0282 -3.2200 -3.6191
14 6 1.1742 -3.7082 -4.2185
15 6 2.3454 -3.8090 -3.4912
16 6 2.3730 -3.4127 -2.1672
17 7 1.9299 -3.5262 0.6789
18 6 1.3500 -4.8631 0.4205
19 6 1.8136 -5.9008 1.4061
20 6 0.7835 -5.9828 2.5521
21 6 0.9350 -4.8914 3.5081
22 6 0.7247 -3.5100 2.8534
23 6 1.9772 -3.1399 2.1067
24 1 -0.4850 0.8401 -0.0004
25 1 -0.8405 -2.4461 -1.8256
26 1 -0.8878 -3.1451 -4.1862
27 1 1.1535 -4.0145 -5.2539
28 1 3.2397 -4.1946 -3.9583
29 1 3.2890 -3.4883 -1.5999
30 1 0.2636 -4.7908 0.4714
31 1 1.6322 -5.1808 -0.5833
32 1 2.7861 -5.6160 1.8076
33 1 1.8882 -6.8690 0.9107
34 1 0.9101 -6.9309 3.0746
35 1 -0.2203 -5.9454 2.1287
36 1 1.9371 -4.9317 3.9349
37 1 0.2060 -5.0183 4.3083
38 1 0.5246 -2.7659 3.6244
39 1 -0.1147 -3.5574 2.1596
40 1 2.8263 -3.6358 2.5771
41 1 2.1211 -2.0616 2.1745
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000055019921.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:17:08
Heat of formation + Delta-G solvation = 18.220422 kcal
Electronic energy + Delta-G solvation = -20266.986641 eV
Core-core repulsion = 17531.985162 eV
Total energy + Delta-G solvation = -2735.001480 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 259.163 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-39.05434 -37.80309 -34.51497 -32.28164 -31.49774 -30.27171 -29.93036 -27.06238
-25.17137 -24.09513 -22.60925 -21.54683 -20.33527 -19.96588 -18.55828 -16.48037
-15.82096 -15.64107 -14.94768 -14.58771 -14.23879 -13.99979 -13.47620 -13.31166
-12.89225 -12.57797 -12.44355 -12.32897 -11.96994 -11.69793 -11.51805 -11.35813
-11.06285 -10.98205 -10.55468 -10.44373 -10.32216 -10.18233 -10.11406 -9.89023
-9.65951 -9.53095 -9.29998 -8.57898 -8.00002 -7.62022 -6.99675 -6.09993
-4.12802 2.32893 2.36163 3.26154 3.34826 3.39460 4.35235 4.69488
4.99081 5.11801 5.20618 5.26873 5.41637 5.68602 5.69696 5.79615
5.82848 5.88586 6.00334 6.05014 6.09963 6.24609 6.35597 6.42015
6.46473 6.48090 6.54777 6.56719 6.59657 6.70172 6.75758 6.89023
6.92711 7.00786 7.15621 7.34657 7.38183 7.47346 7.80818 7.81221
7.90943 8.13075 8.29213 8.61121 9.00891 9.50402 10.95261
Molecular weight = 259.16amu
Principal moments of inertia in cm(-1)
A = 0.013384 B = 0.010159 C = 0.006591
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2091.489161 B = 2755.390369 C = 4246.909220
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.886 5.886
2 C 0.066 3.934
3 Si 0.893 3.107
4 H -0.270 1.270
5 H -0.284 1.284
6 H -0.284 1.284
7 C -0.492 4.492
8 H 0.065 0.935
9 C 0.235 3.765
10 H 0.042 0.958
11 C -0.023 4.023
12 C -0.119 4.119
13 C -0.131 4.131
14 C -0.153 4.153
15 C -0.136 4.136
16 C -0.103 4.103
17 N -0.543 5.543
18 C 0.060 3.940
19 C -0.117 4.117
20 C -0.117 4.117
21 C -0.115 4.115
22 C -0.142 4.142
23 C 0.071 3.929
24 H 0.262 0.738
25 H 0.115 0.885
26 H 0.105 0.895
27 H 0.103 0.897
28 H 0.105 0.895
29 H 0.120 0.880
30 H 0.020 0.980
31 H 0.063 0.937
32 H 0.071 0.929
33 H 0.058 0.942
34 H 0.050 0.950
35 H 0.055 0.945
36 H 0.056 0.944
37 H 0.048 0.952
38 H 0.058 0.942
39 H 0.062 0.938
40 H 0.049 0.951
41 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.076 -8.845 1.056 8.972
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.523 5.523
2 C -0.137 4.137
3 Si 0.720 3.280
4 H -0.195 1.195
5 H -0.210 1.210
6 H -0.211 1.211
7 C -0.530 4.530
8 H 0.083 0.917
9 C 0.129 3.871
10 H 0.059 0.941
11 C -0.024 4.024
12 C -0.138 4.138
13 C -0.149 4.149
14 C -0.172 4.172
15 C -0.154 4.154
16 C -0.122 4.122
17 N -0.268 5.268
18 C -0.067 4.067
19 C -0.155 4.155
20 C -0.154 4.154
21 C -0.153 4.153
22 C -0.181 4.181
23 C -0.057 4.057
24 H 0.072 0.928
25 H 0.133 0.867
26 H 0.123 0.877
27 H 0.121 0.879
28 H 0.123 0.877
29 H 0.138 0.862
30 H 0.038 0.962
31 H 0.081 0.919
32 H 0.090 0.910
33 H 0.077 0.923
34 H 0.069 0.931
35 H 0.073 0.927
36 H 0.075 0.925
37 H 0.067 0.933
38 H 0.077 0.923
39 H 0.081 0.919
40 H 0.067 0.933
41 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges 1.374 -8.748 0.925 8.904
hybrid contribution -0.555 1.087 0.063 1.223
sum 0.819 -7.661 0.988 7.767
Atomic orbital electron populations
1.69921 1.05964 1.26799 1.49629 1.24993 0.94861 0.99359 0.94535
0.86516 0.80386 0.83497 0.77554 1.19487 1.20977 1.21061 1.20978
0.93785 0.88899 1.49370 0.91725 1.18493 0.95488 0.88399 0.84740
0.94070 1.20542 0.91646 0.91359 0.98835 1.21084 0.98625 1.00013
0.94042 1.20949 0.97556 1.00971 0.95426 1.20799 0.93777 1.03728
0.98866 1.21007 0.97219 1.02128 0.95088 1.20978 0.98748 0.98660
0.93785 1.61989 1.56887 1.00911 1.07042 1.21700 0.96442 0.90177
0.98423 1.21412 0.99419 0.98326 0.96330 1.20576 0.99551 0.98058
0.97238 1.20561 1.01103 0.95698 0.97924 1.21874 1.00855 0.95506
0.99907 1.21636 0.94562 1.02371 0.87142 0.92831 0.86703 0.87707
0.87856 0.87675 0.86242 0.96168 0.91899 0.91020 0.92324 0.93131
0.92666 0.92513 0.93348 0.92313 0.91922 0.93258 0.89488
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -24.37 12.77 55.43 0.71 -23.67 16
2 C 0.07 1.75 5.45 -17.82 -0.10 1.65 16
3 Si 0.89 20.93 29.54 -169.99 -5.02 15.90 16
4 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16
5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
7 C -0.49 -12.81 6.74 -34.44 -0.23 -13.04 16
8 H 0.06 1.72 7.82 -52.49 -0.41 1.31 16
9 C 0.23 5.57 1.77 -70.01 -0.12 5.45 16
10 H 0.04 1.11 6.62 -51.93 -0.34 0.77 16
11 C -0.02 -0.51 3.69 -104.63 -0.39 -0.90 16
12 C -0.12 -2.60 9.67 -39.59 -0.38 -2.98 16
13 C -0.13 -2.49 10.05 -39.59 -0.40 -2.89 16
14 C -0.15 -2.73 10.05 -39.58 -0.40 -3.13 16
15 C -0.14 -2.50 10.05 -39.58 -0.40 -2.90 16
16 C -0.10 -2.14 8.01 -39.59 -0.32 -2.46 16
17 N -0.54 -11.20 4.15 -230.71 -0.96 -12.16 16
18 C 0.06 1.10 4.24 -4.50 -0.02 1.08 16
19 C -0.12 -1.76 5.63 -27.32 -0.15 -1.91 16
20 C -0.12 -1.63 5.30 -29.41 -0.16 -1.78 16
21 C -0.12 -1.66 5.30 -29.42 -0.16 -1.82 16
22 C -0.14 -2.50 5.59 -27.32 -0.15 -2.65 16
23 C 0.07 1.37 5.00 -4.50 -0.02 1.35 16
24 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16
25 H 0.11 2.62 7.99 -52.48 -0.42 2.20 16
26 H 0.10 1.73 8.06 -52.49 -0.42 1.30 16
27 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16
28 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16
29 H 0.12 2.48 7.93 -52.48 -0.42 2.07 16
30 H 0.02 0.39 6.48 -51.93 -0.34 0.06 16
31 H 0.06 1.18 6.40 -51.93 -0.33 0.85 16
32 H 0.07 1.11 7.08 -51.93 -0.37 0.74 16
33 H 0.06 0.79 8.14 -51.92 -0.42 0.36 16
34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16
35 H 0.05 0.80 7.52 -51.93 -0.39 0.41 16
36 H 0.06 0.78 7.52 -51.93 -0.39 0.39 16
37 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16
38 H 0.06 1.01 8.14 -51.92 -0.42 0.58 16
39 H 0.06 1.23 6.62 -51.93 -0.34 0.89 16
40 H 0.05 0.88 6.59 -51.93 -0.34 0.54 16
41 H 0.09 1.92 6.48 -51.93 -0.34 1.58 16
LS Contribution 314.40 15.07 4.74 4.74
Total: -1.00 -26.71 314.40 -10.45 -37.15
By element:
Atomic # 1 Polarization: 11.48 SS G_CDS: -6.52 Total: 4.96 kcal
Atomic # 6 Polarization: -23.54 SS G_CDS: -3.39 Total: -26.93 kcal
Atomic # 7 Polarization: -35.58 SS G_CDS: -0.25 Total: -35.82 kcal
Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal
Total LS contribution 4.74 Total: 4.74 kcal
Total: -26.71 -10.45 -37.15 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000055019921.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 55.374 kcal
(2) G-P(sol) polarization free energy of solvation -26.706 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.668 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.448 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.154 kcal
(6) G-S(sol) free energy of system = (1) + (5) 18.220 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds