Wall clock time and date at job start Mon Mar 30 2020 07:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99996 * 2 1 4 4 H 1.48501 * 109.47205 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46991 * 299.99871 * 3 2 1 6 6 H 1.48494 * 109.47183 * 59.99703 * 3 2 1 7 7 C 1.37878 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00110 * 185.45911 * 7 2 1 9 9 C 1.50707 * 119.99813 * 5.46618 * 7 2 1 10 10 H 1.09002 * 109.46880 * 334.84940 * 9 7 2 11 11 C 1.50699 * 109.47295 * 94.85073 * 9 7 2 12 12 C 1.38238 * 119.99863 * 253.09914 * 11 9 7 13 13 C 1.38228 * 120.00073 * 180.02562 * 12 11 9 14 14 C 1.38231 * 120.00101 * 359.95677 * 13 12 11 15 15 C 1.38239 * 119.99775 * 0.27314 * 14 13 12 16 16 C 1.38228 * 119.99836 * 359.53519 * 15 14 13 17 17 N 1.46899 * 109.46629 * 214.85239 * 9 7 2 18 18 C 1.48001 * 110.99645 * 188.71778 * 17 9 7 19 19 C 1.50438 * 112.82893 * 191.34501 * 18 17 9 20 20 C 1.54311 * 108.50590 * 93.72655 * 19 18 17 21 21 C 1.45880 * 112.18379 * 281.46843 * 20 19 18 22 22 C 1.54310 * 112.18341 * 61.11376 * 21 20 19 23 23 C 1.47995 * 111.00550 * 59.99849 * 17 9 7 24 24 H 0.97003 * 119.99978 * 0.02562 * 1 2 3 25 25 H 1.08005 * 119.99727 * 359.97438 * 12 11 9 26 26 H 1.07997 * 120.00121 * 179.97438 * 13 12 11 27 27 H 1.07996 * 120.00449 * 180.02562 * 14 13 12 28 28 H 1.08008 * 119.99854 * 179.72534 * 15 14 13 29 29 H 1.08003 * 119.99769 * 180.20929 * 16 15 14 30 30 H 1.09000 * 108.81177 * 312.20877 * 18 17 9 31 31 H 1.09005 * 108.81633 * 70.47762 * 18 17 9 32 32 H 1.09001 * 109.63486 * 334.01993 * 19 18 17 33 33 H 1.09008 * 109.63463 * 213.43210 * 19 18 17 34 34 H 1.08990 * 108.94350 * 160.76696 * 20 19 18 35 35 H 1.09005 * 108.93423 * 42.15812 * 20 19 18 36 36 H 1.09001 * 108.93456 * 300.42016 * 21 20 19 37 37 H 1.08994 * 108.93904 * 181.81311 * 21 20 19 38 38 H 1.09008 * 109.63246 * 161.76046 * 22 21 20 39 39 H 1.08999 * 109.63457 * 41.16800 * 22 21 20 40 40 H 1.08995 * 108.81360 * 205.70103 * 23 17 9 41 41 H 1.08998 * 108.80834 * 323.97457 * 23 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0809 -1.1961 0.0895 9 6 1.2562 -2.4963 -0.1232 10 1 0.2360 -2.3647 0.2372 11 6 1.2273 -2.9238 -1.5680 12 6 0.0549 -2.8274 -2.2940 13 6 0.0282 -3.2200 -3.6191 14 6 1.1742 -3.7082 -4.2185 15 6 2.3454 -3.8090 -3.4912 16 6 2.3730 -3.4127 -2.1672 17 7 1.9299 -3.5262 0.6789 18 6 1.3500 -4.8631 0.4205 19 6 1.8136 -5.9008 1.4061 20 6 0.7835 -5.9828 2.5521 21 6 0.9350 -4.8914 3.5081 22 6 0.7247 -3.5100 2.8534 23 6 1.9772 -3.1399 2.1067 24 1 -0.4850 0.8401 -0.0004 25 1 -0.8405 -2.4461 -1.8256 26 1 -0.8878 -3.1451 -4.1862 27 1 1.1535 -4.0145 -5.2539 28 1 3.2397 -4.1946 -3.9583 29 1 3.2890 -3.4883 -1.5999 30 1 0.2636 -4.7908 0.4714 31 1 1.6322 -5.1808 -0.5833 32 1 2.7861 -5.6160 1.8076 33 1 1.8882 -6.8690 0.9107 34 1 0.9101 -6.9309 3.0746 35 1 -0.2203 -5.9454 2.1287 36 1 1.9371 -4.9317 3.9349 37 1 0.2060 -5.0183 4.3083 38 1 0.5246 -2.7659 3.6244 39 1 -0.1147 -3.5574 2.1596 40 1 2.8263 -3.6358 2.5771 41 1 2.1211 -2.0616 2.1745 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055019921.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:08 Heat of formation + Delta-G solvation = 18.220422 kcal Electronic energy + Delta-G solvation = -20266.986641 eV Core-core repulsion = 17531.985162 eV Total energy + Delta-G solvation = -2735.001480 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.05434 -37.80309 -34.51497 -32.28164 -31.49774 -30.27171 -29.93036 -27.06238 -25.17137 -24.09513 -22.60925 -21.54683 -20.33527 -19.96588 -18.55828 -16.48037 -15.82096 -15.64107 -14.94768 -14.58771 -14.23879 -13.99979 -13.47620 -13.31166 -12.89225 -12.57797 -12.44355 -12.32897 -11.96994 -11.69793 -11.51805 -11.35813 -11.06285 -10.98205 -10.55468 -10.44373 -10.32216 -10.18233 -10.11406 -9.89023 -9.65951 -9.53095 -9.29998 -8.57898 -8.00002 -7.62022 -6.99675 -6.09993 -4.12802 2.32893 2.36163 3.26154 3.34826 3.39460 4.35235 4.69488 4.99081 5.11801 5.20618 5.26873 5.41637 5.68602 5.69696 5.79615 5.82848 5.88586 6.00334 6.05014 6.09963 6.24609 6.35597 6.42015 6.46473 6.48090 6.54777 6.56719 6.59657 6.70172 6.75758 6.89023 6.92711 7.00786 7.15621 7.34657 7.38183 7.47346 7.80818 7.81221 7.90943 8.13075 8.29213 8.61121 9.00891 9.50402 10.95261 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.013384 B = 0.010159 C = 0.006591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.489161 B = 2755.390369 C = 4246.909220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.066 3.934 3 Si 0.893 3.107 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.492 4.492 8 H 0.065 0.935 9 C 0.235 3.765 10 H 0.042 0.958 11 C -0.023 4.023 12 C -0.119 4.119 13 C -0.131 4.131 14 C -0.153 4.153 15 C -0.136 4.136 16 C -0.103 4.103 17 N -0.543 5.543 18 C 0.060 3.940 19 C -0.117 4.117 20 C -0.117 4.117 21 C -0.115 4.115 22 C -0.142 4.142 23 C 0.071 3.929 24 H 0.262 0.738 25 H 0.115 0.885 26 H 0.105 0.895 27 H 0.103 0.897 28 H 0.105 0.895 29 H 0.120 0.880 30 H 0.020 0.980 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.048 0.952 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.049 0.951 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.076 -8.845 1.056 8.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.137 4.137 3 Si 0.720 3.280 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.530 4.530 8 H 0.083 0.917 9 C 0.129 3.871 10 H 0.059 0.941 11 C -0.024 4.024 12 C -0.138 4.138 13 C -0.149 4.149 14 C -0.172 4.172 15 C -0.154 4.154 16 C -0.122 4.122 17 N -0.268 5.268 18 C -0.067 4.067 19 C -0.155 4.155 20 C -0.154 4.154 21 C -0.153 4.153 22 C -0.181 4.181 23 C -0.057 4.057 24 H 0.072 0.928 25 H 0.133 0.867 26 H 0.123 0.877 27 H 0.121 0.879 28 H 0.123 0.877 29 H 0.138 0.862 30 H 0.038 0.962 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.374 -8.748 0.925 8.904 hybrid contribution -0.555 1.087 0.063 1.223 sum 0.819 -7.661 0.988 7.767 Atomic orbital electron populations 1.69921 1.05964 1.26799 1.49629 1.24993 0.94861 0.99359 0.94535 0.86516 0.80386 0.83497 0.77554 1.19487 1.20977 1.21061 1.20978 0.93785 0.88899 1.49370 0.91725 1.18493 0.95488 0.88399 0.84740 0.94070 1.20542 0.91646 0.91359 0.98835 1.21084 0.98625 1.00013 0.94042 1.20949 0.97556 1.00971 0.95426 1.20799 0.93777 1.03728 0.98866 1.21007 0.97219 1.02128 0.95088 1.20978 0.98748 0.98660 0.93785 1.61989 1.56887 1.00911 1.07042 1.21700 0.96442 0.90177 0.98423 1.21412 0.99419 0.98326 0.96330 1.20576 0.99551 0.98058 0.97238 1.20561 1.01103 0.95698 0.97924 1.21874 1.00855 0.95506 0.99907 1.21636 0.94562 1.02371 0.87142 0.92831 0.86703 0.87707 0.87856 0.87675 0.86242 0.96168 0.91899 0.91020 0.92324 0.93131 0.92666 0.92513 0.93348 0.92313 0.91922 0.93258 0.89488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.37 12.77 55.43 0.71 -23.67 16 2 C 0.07 1.75 5.45 -17.82 -0.10 1.65 16 3 Si 0.89 20.93 29.54 -169.99 -5.02 15.90 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.49 -12.81 6.74 -34.44 -0.23 -13.04 16 8 H 0.06 1.72 7.82 -52.49 -0.41 1.31 16 9 C 0.23 5.57 1.77 -70.01 -0.12 5.45 16 10 H 0.04 1.11 6.62 -51.93 -0.34 0.77 16 11 C -0.02 -0.51 3.69 -104.63 -0.39 -0.90 16 12 C -0.12 -2.60 9.67 -39.59 -0.38 -2.98 16 13 C -0.13 -2.49 10.05 -39.59 -0.40 -2.89 16 14 C -0.15 -2.73 10.05 -39.58 -0.40 -3.13 16 15 C -0.14 -2.50 10.05 -39.58 -0.40 -2.90 16 16 C -0.10 -2.14 8.01 -39.59 -0.32 -2.46 16 17 N -0.54 -11.20 4.15 -230.71 -0.96 -12.16 16 18 C 0.06 1.10 4.24 -4.50 -0.02 1.08 16 19 C -0.12 -1.76 5.63 -27.32 -0.15 -1.91 16 20 C -0.12 -1.63 5.30 -29.41 -0.16 -1.78 16 21 C -0.12 -1.66 5.30 -29.42 -0.16 -1.82 16 22 C -0.14 -2.50 5.59 -27.32 -0.15 -2.65 16 23 C 0.07 1.37 5.00 -4.50 -0.02 1.35 16 24 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 25 H 0.11 2.62 7.99 -52.48 -0.42 2.20 16 26 H 0.10 1.73 8.06 -52.49 -0.42 1.30 16 27 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 28 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 29 H 0.12 2.48 7.93 -52.48 -0.42 2.07 16 30 H 0.02 0.39 6.48 -51.93 -0.34 0.06 16 31 H 0.06 1.18 6.40 -51.93 -0.33 0.85 16 32 H 0.07 1.11 7.08 -51.93 -0.37 0.74 16 33 H 0.06 0.79 8.14 -51.92 -0.42 0.36 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.80 7.52 -51.93 -0.39 0.41 16 36 H 0.06 0.78 7.52 -51.93 -0.39 0.39 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.06 1.01 8.14 -51.92 -0.42 0.58 16 39 H 0.06 1.23 6.62 -51.93 -0.34 0.89 16 40 H 0.05 0.88 6.59 -51.93 -0.34 0.54 16 41 H 0.09 1.92 6.48 -51.93 -0.34 1.58 16 LS Contribution 314.40 15.07 4.74 4.74 Total: -1.00 -26.71 314.40 -10.45 -37.15 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -6.52 Total: 4.96 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: -3.39 Total: -26.93 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: -0.25 Total: -35.82 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -26.71 -10.45 -37.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055019921.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.374 kcal (2) G-P(sol) polarization free energy of solvation -26.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds