Wall clock time and date at job start Mon Mar 30 2020 07:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99996 * 2 1 4 4 H 1.48501 * 109.47205 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46991 * 299.99871 * 3 2 1 6 6 H 1.48494 * 109.47183 * 59.99703 * 3 2 1 7 7 C 1.37878 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00110 * 185.45911 * 7 2 1 9 9 C 1.50707 * 119.99813 * 5.46618 * 7 2 1 10 10 H 1.09002 * 109.46880 * 334.84940 * 9 7 2 11 11 C 1.50699 * 109.47295 * 94.85073 * 9 7 2 12 12 C 1.38238 * 119.99863 * 253.09914 * 11 9 7 13 13 C 1.38228 * 120.00073 * 180.02562 * 12 11 9 14 14 C 1.38231 * 120.00101 * 359.95677 * 13 12 11 15 15 C 1.38239 * 119.99775 * 0.27314 * 14 13 12 16 16 C 1.38228 * 119.99836 * 359.53519 * 15 14 13 17 17 N 1.46899 * 109.46629 * 214.85239 * 9 7 2 18 18 C 1.48001 * 110.99645 * 188.71778 * 17 9 7 19 19 C 1.50438 * 112.82893 * 191.34501 * 18 17 9 20 20 C 1.54311 * 108.50590 * 93.72655 * 19 18 17 21 21 C 1.45880 * 112.18379 * 281.46843 * 20 19 18 22 22 C 1.54310 * 112.18341 * 61.11376 * 21 20 19 23 23 C 1.47995 * 111.00550 * 59.99849 * 17 9 7 24 24 H 0.97003 * 119.99978 * 0.02562 * 1 2 3 25 25 H 1.08005 * 119.99727 * 359.97438 * 12 11 9 26 26 H 1.07997 * 120.00121 * 179.97438 * 13 12 11 27 27 H 1.07996 * 120.00449 * 180.02562 * 14 13 12 28 28 H 1.08008 * 119.99854 * 179.72534 * 15 14 13 29 29 H 1.08003 * 119.99769 * 180.20929 * 16 15 14 30 30 H 1.09000 * 108.81177 * 312.20877 * 18 17 9 31 31 H 1.09005 * 108.81633 * 70.47762 * 18 17 9 32 32 H 1.09001 * 109.63486 * 334.01993 * 19 18 17 33 33 H 1.09008 * 109.63463 * 213.43210 * 19 18 17 34 34 H 1.08990 * 108.94350 * 160.76696 * 20 19 18 35 35 H 1.09005 * 108.93423 * 42.15812 * 20 19 18 36 36 H 1.09001 * 108.93456 * 300.42016 * 21 20 19 37 37 H 1.08994 * 108.93904 * 181.81311 * 21 20 19 38 38 H 1.09008 * 109.63246 * 161.76046 * 22 21 20 39 39 H 1.08999 * 109.63457 * 41.16800 * 22 21 20 40 40 H 1.08995 * 108.81360 * 205.70103 * 23 17 9 41 41 H 1.08998 * 108.80834 * 323.97457 * 23 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0809 -1.1961 0.0895 9 6 1.2562 -2.4963 -0.1232 10 1 0.2360 -2.3647 0.2372 11 6 1.2273 -2.9238 -1.5680 12 6 0.0549 -2.8274 -2.2940 13 6 0.0282 -3.2200 -3.6191 14 6 1.1742 -3.7082 -4.2185 15 6 2.3454 -3.8090 -3.4912 16 6 2.3730 -3.4127 -2.1672 17 7 1.9299 -3.5262 0.6789 18 6 1.3500 -4.8631 0.4205 19 6 1.8136 -5.9008 1.4061 20 6 0.7835 -5.9828 2.5521 21 6 0.9350 -4.8914 3.5081 22 6 0.7247 -3.5100 2.8534 23 6 1.9772 -3.1399 2.1067 24 1 -0.4850 0.8401 -0.0004 25 1 -0.8405 -2.4461 -1.8256 26 1 -0.8878 -3.1451 -4.1862 27 1 1.1535 -4.0145 -5.2539 28 1 3.2397 -4.1946 -3.9583 29 1 3.2890 -3.4883 -1.5999 30 1 0.2636 -4.7908 0.4714 31 1 1.6322 -5.1808 -0.5833 32 1 2.7861 -5.6160 1.8076 33 1 1.8882 -6.8690 0.9107 34 1 0.9101 -6.9309 3.0746 35 1 -0.2203 -5.9454 2.1287 36 1 1.9371 -4.9317 3.9349 37 1 0.2060 -5.0183 4.3083 38 1 0.5246 -2.7659 3.6244 39 1 -0.1147 -3.5574 2.1596 40 1 2.8263 -3.6358 2.5771 41 1 2.1211 -2.0616 2.1745 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055019921.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:07 Heat of formation + Delta-G solvation = 4.910881 kcal Electronic energy + Delta-G solvation = -20267.563786 eV Core-core repulsion = 17531.985162 eV Total energy + Delta-G solvation = -2735.578625 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.61194 -39.27526 -36.12808 -34.14203 -32.92533 -31.85456 -31.49051 -28.79488 -26.83570 -25.57142 -24.30269 -23.12284 -21.88689 -21.27381 -20.15354 -18.39333 -17.46361 -17.17151 -16.45984 -16.34126 -15.73386 -15.56214 -15.04885 -14.71409 -14.39133 -14.21028 -13.92682 -13.84824 -13.63533 -13.21811 -13.06788 -12.94889 -12.87552 -12.73902 -12.25572 -11.93386 -11.87620 -11.65338 -11.51256 -11.40057 -11.30028 -11.10688 -10.94457 -10.61080 -9.56977 -9.25846 -8.71949 -8.11613 -6.21766 0.74454 0.79784 1.37006 1.39741 1.50763 2.39311 3.03239 3.27238 3.44552 3.86353 3.94511 4.14551 4.27513 4.31761 4.33455 4.42677 4.48065 4.61338 4.62454 4.69336 4.84858 4.86498 4.93079 4.98486 5.09986 5.16108 5.21328 5.26127 5.28261 5.34168 5.42290 5.45163 5.51227 5.52641 5.60505 5.72161 5.80483 5.86189 6.12860 6.18111 6.40698 6.52446 6.87320 6.99550 7.44572 8.91595 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.013384 B = 0.010159 C = 0.006591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.489161 B = 2755.390369 C = 4246.909220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.019 3.981 3 Si 0.949 3.051 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.280 1.280 7 C -0.496 4.496 8 H 0.054 0.946 9 C 0.246 3.754 10 H -0.004 1.004 11 C -0.046 4.046 12 C -0.145 4.145 13 C -0.130 4.130 14 C -0.143 4.143 15 C -0.128 4.128 16 C -0.115 4.115 17 N -0.545 5.545 18 C 0.068 3.932 19 C -0.112 4.112 20 C -0.115 4.115 21 C -0.108 4.108 22 C -0.138 4.138 23 C 0.073 3.927 24 H 0.260 0.740 25 H 0.088 0.912 26 H 0.131 0.869 27 H 0.146 0.854 28 H 0.142 0.858 29 H 0.114 0.886 30 H -0.001 1.001 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.043 0.957 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.031 0.969 40 H 0.071 0.929 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.500 -10.721 0.181 11.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.181 4.181 3 Si 0.775 3.225 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.206 1.206 7 C -0.534 4.534 8 H 0.072 0.928 9 C 0.139 3.861 10 H 0.014 0.986 11 C -0.047 4.047 12 C -0.164 4.164 13 C -0.148 4.148 14 C -0.161 4.161 15 C -0.146 4.146 16 C -0.133 4.133 17 N -0.270 5.270 18 C -0.060 4.060 19 C -0.149 4.149 20 C -0.152 4.152 21 C -0.145 4.145 22 C -0.178 4.178 23 C -0.055 4.055 24 H 0.069 0.931 25 H 0.106 0.894 26 H 0.149 0.851 27 H 0.164 0.836 28 H 0.159 0.841 29 H 0.132 0.868 30 H 0.017 0.983 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.062 0.938 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.050 0.950 40 H 0.089 0.911 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.809 -10.637 0.059 11.002 hybrid contribution -1.004 1.602 0.281 1.911 sum 1.806 -9.035 0.340 9.220 Atomic orbital electron populations 1.70058 1.07168 1.27148 1.51215 1.25663 0.95527 1.02216 0.94663 0.85636 0.79389 0.80034 0.77432 1.18957 1.21049 1.20578 1.21136 0.93226 0.90311 1.48763 0.92819 1.18165 0.92799 0.88774 0.86351 0.98591 1.20432 0.92909 0.93319 0.98016 1.21045 0.97693 1.01885 0.95782 1.21249 0.99493 0.99907 0.94134 1.21261 0.92570 1.01674 1.00602 1.21397 0.98917 1.00463 0.93837 1.20982 0.97661 0.99461 0.95222 1.61963 1.56371 1.01360 1.07317 1.21707 0.95084 0.89769 0.99423 1.21406 0.99532 0.97998 0.95982 1.20564 0.98510 0.99316 0.96855 1.20508 1.02526 0.93250 0.98212 1.21791 0.98631 0.98173 0.99157 1.21619 0.96299 1.00423 0.87131 0.93071 0.89411 0.85131 0.83647 0.84053 0.86818 0.98286 0.92500 0.90877 0.89964 0.89907 0.93790 0.91007 0.91555 0.92459 0.95023 0.91054 0.92991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.31 12.77 21.45 0.27 -53.04 16 2 C 0.02 1.05 5.45 84.65 0.46 1.52 16 3 Si 0.95 44.21 29.54 68.60 2.03 46.23 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 6 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 7 C -0.50 -27.07 6.74 25.60 0.17 -26.89 16 8 H 0.05 2.98 7.82 -2.91 -0.02 2.95 16 9 C 0.25 12.39 1.77 43.42 0.08 12.47 16 10 H 0.00 -0.22 6.62 -2.39 -0.02 -0.23 16 11 C -0.05 -2.13 3.69 -19.87 -0.07 -2.20 16 12 C -0.15 -6.59 9.67 22.27 0.22 -6.37 16 13 C -0.13 -4.77 10.05 22.27 0.22 -4.55 16 14 C -0.14 -4.60 10.05 22.27 0.22 -4.37 16 15 C -0.13 -4.34 10.05 22.27 0.22 -4.11 16 16 C -0.11 -4.72 8.01 22.27 0.18 -4.54 16 17 N -0.55 -23.34 4.15 -883.84 -3.66 -27.01 16 18 C 0.07 2.51 4.24 85.26 0.36 2.87 16 19 C -0.11 -3.15 5.63 30.21 0.17 -2.98 16 20 C -0.12 -2.96 5.30 28.86 0.15 -2.81 16 21 C -0.11 -2.92 5.30 28.86 0.15 -2.76 16 22 C -0.14 -5.02 5.59 30.21 0.17 -4.85 16 23 C 0.07 2.93 5.00 85.27 0.43 3.35 16 24 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 25 H 0.09 4.35 7.99 -2.91 -0.02 4.32 16 26 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 27 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 28 H 0.14 3.76 8.06 -2.91 -0.02 3.73 16 29 H 0.11 4.72 7.93 -2.91 -0.02 4.70 16 30 H 0.00 -0.05 6.48 -2.39 -0.02 -0.06 16 31 H 0.06 2.15 6.40 -2.38 -0.02 2.14 16 32 H 0.07 2.07 7.08 -2.39 -0.02 2.06 16 33 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 34 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.04 1.24 7.52 -2.38 -0.02 1.22 16 36 H 0.07 1.77 7.52 -2.39 -0.02 1.75 16 37 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 39 H 0.03 1.33 6.62 -2.39 -0.02 1.31 16 40 H 0.07 2.51 6.59 -2.39 -0.02 2.50 16 41 H 0.05 2.43 6.48 -2.39 -0.02 2.41 16 Total: -1.00 -61.44 314.40 2.76 -58.68 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: 0.99 Total: 21.37 kcal Atomic # 6 Polarization: -49.37 SS G_CDS: 3.14 Total: -46.24 kcal Atomic # 7 Polarization: -76.66 SS G_CDS: -3.39 Total: -80.05 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -61.44 2.76 -58.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055019921.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.592 kcal (2) G-P(sol) polarization free energy of solvation -61.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds